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Aliases for MIR1293 Gene

Subcategory (RNA class) for MIR1293 Gene

miRNA

Quality Score for this RNA gene is

8

Aliases for MIR1293 Gene

  • MicroRNA 1293 2 3 5
  • Hsa-Mir-1293 3
  • Mir-1293 3
  • MIRN1293 3

External Ids for MIR1293 Gene

Previous HGNC Symbols for MIR1293 Gene

  • MIRN1293

Previous GeneCards Identifiers for MIR1293 Gene

  • GC00U923124
  • GC12M048915
  • GC12M050627

Summaries for MIR1293 Gene

Entrez Gene Summary for MIR1293 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR1293 Gene

MIR1293 (MicroRNA 1293) is an RNA Gene, and is affiliated with the miRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR1293 Gene

Genomics for MIR1293 Gene

Regulatory Elements for MIR1293 Gene

Enhancers for MIR1293 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12F050234 0.9 Ensembl ENCODE 0.8 -0.4 -413 1.0 CTCF TBP MXI1 KLF17 MAX RAD21 ZNF121 POLR3A SMC3 NFE2 CERS5 ENSG00000257298 MIR1293 RNU6-1093P
GH12F050232 0.6 ENCODE 0.8 +1.3 1331 0.6 SMARCE1 HDAC1 GFI1B FEZF1 ZNF384 ZIC2 SREBF1 GATA3 PBX2 ZNF341 MIR1293 ENSG00000257256
GH12F050239 1.3 Ensembl ENCODE 0.4 -7.7 -7667 5.0 PKNOX1 ZNF133 YBX1 GATA2 FOS SP5 NFYC REST PPARG MAFF CERS5 LIMA1 MIR1293 RNU6-1093P
GH12F050217 0.5 Ensembl ENCODE 0.4 +13.0 13048 8.0 PKNOX1 ARNT WRNIP1 SIN3A FEZF1 ZNF2 FOS SP3 JUNB REST PRPF40B ENSG00000257964 CERS5 BCDIN3D ENSG00000257298 LIMA1 TFCP2 LOC100422296 ENSG00000257256 MIR1293
GH12F050244 0.2 Ensembl 0.4 -10.6 -10589 0.4 POLR2H ZFP64 ZBTB20 RNU6-1093P MIR1293
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around MIR1293 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR1293 Gene

Chromosome:
12
Start:
50,234,142 bp from pter
End:
50,234,212 bp from pter
Size:
71 bases
Orientation:
Minus strand

Genomic View for MIR1293 Gene

Genes around MIR1293 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR1293 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR1293 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR1293 Gene

ORGUL Member Location for MIR1293 Gene

ORGUL Member Location for MIR1293 gene

Proteins for MIR1293 Gene

Post-translational modifications for MIR1293 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR1293 Gene

Domains & Families for MIR1293 Gene

Gene Families for MIR1293 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR1293: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR1293 Gene

Function for MIR1293 Gene

Animal Model Products

miRNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR1293 Gene

Localization for MIR1293 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR1293 Gene

Pathways & Interactions for MIR1293 Gene

SuperPathways for MIR1293 Gene

No Data Available

Interacting Proteins for MIR1293 Gene

Gene Ontology (GO) - Biological Process for MIR1293 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR1293 Gene

Transcripts for MIR1293 Gene

mRNA/cDNA for MIR1293 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR1293 Gene

No ASD Table

Relevant External Links for MIR1293 Gene

GeneLoc Exon Structure for
MIR1293
ECgene alternative splicing isoforms for
MIR1293

Expression for MIR1293 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR1293 Gene:

MIR1293
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MIR1293 Gene

Orthologs for MIR1293 Gene

Evolution for MIR1293 Gene

ENSEMBL:
Gene Tree for MIR1293 (if available)
TreeFam:
Gene Tree for MIR1293 (if available)

No data available for Orthologs for MIR1293 Gene

Paralogs for MIR1293 Gene

No data available for Paralogs for MIR1293 Gene

Variants for MIR1293 Gene

Sequence variations from dbSNP and Humsavar for MIR1293 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs10783342 -- 50,234,683(+) ATTCA(C/T)GAGGC intron-variant, upstream-variant-2KB
rs111314935 -- 50,235,111(+) AAAAT(A/T)TTTTT intron-variant, upstream-variant-2KB
rs11169330 -- 50,234,049(+) TATTA(C/T)TTTTA intron-variant, downstream-variant-500B
rs11169331 -- 50,235,127(+) taggg(C/T)cacgc intron-variant, upstream-variant-2KB
rs11169332 -- 50,235,829(+) AATAA(A/G)CAGGA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR1293 Gene

Variant ID Type Subtype PubMed ID
esv2761738 CNV gain 21179565

Relevant External Links for MIR1293 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR1293

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR1293 Gene

Disorders for MIR1293 Gene

Relevant External Links for MIR1293

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR1293

No disorders were found for MIR1293 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR1293 Gene

Publications for MIR1293 Gene

  1. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A. … Griffiths-Jones S. (Nucleic Acids Res. 2011) 3 64
  2. Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells. (PMID: 18285502) Morin R.D. … Marra M.A. (Genome Res. 2008) 3 64
  3. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR1293 Gene

Sources for MIR1293 Gene

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