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Aliases for MIR1292 Gene

Subcategory (RNA class) for MIR1292 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR1292 Gene

  • MicroRNA 1292 2 3 5
  • Hsa-Mir-1292 3
  • Mir-1292 3
  • MIRN1292 3

External Ids for MIR1292 Gene

Previous HGNC Symbols for MIR1292 Gene

  • MIRN1292

Previous GeneCards Identifiers for MIR1292 Gene

  • GC00U922844
  • GC20P002614
  • GC20P002634
  • GC20P002641
  • GC20P002650
  • GC20P002660
  • GC20P002672
  • GC20P002683
  • GC20P002692
  • GC20P002700
  • GC20P002712
  • GC20P002725
  • GC20P002740
  • GC20P002759
  • GC20P002767
  • GC20P002784
  • GC20P002812
  • GC20P002826

Summaries for MIR1292 Gene

Entrez Gene Summary for MIR1292 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR1292 Gene

MIR1292 (MicroRNA 1292) is an RNA Gene, and is affiliated with the miRNA class. Diseases associated with MIR1292 include Spinocerebellar Ataxia 36. Among its related pathways are Chaperonin-mediated protein folding and rRNA processing in the nucleus and cytosol.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR1292 Gene

Genomics for MIR1292 Gene

Regulatory Elements for MIR1292 Gene

Enhancers for MIR1292 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20G002651 1.1 ENCODE 0.7 +0.4 429 4.2 HDGF HNRNPUL1 ZFP64 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 IDH3B ZNF343 VPS16 ITPA NOP56 GC20P002854 MIR1292
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR1292 on UCSC Golden Path with GeneCards custom track

Promoters for MIR1292 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000133685 -177 2401 HDGF HNRNPUL1 ZFP64 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 SLC30A9 ZNF207

Genomic Location for MIR1292 Gene

Chromosome:
20
Start:
2,652,777 bp from pter
End:
2,652,842 bp from pter
Size:
66 bases
Orientation:
Plus strand

Genomic View for MIR1292 Gene

Genes around MIR1292 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR1292 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR1292 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR1292 Gene

Proteins for MIR1292 Gene

Post-translational modifications for MIR1292 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR1292 Gene

Domains & Families for MIR1292 Gene

Gene Families for MIR1292 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR1292: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR1292 Gene

Function for MIR1292 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR1292 Gene

Localization for MIR1292 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR1292 Gene

Drugs & Compounds for MIR1292 Gene

No Compound Related Data Available

Transcripts for MIR1292 Gene

mRNA/cDNA for MIR1292 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR1292 Gene

No ASD Table

Relevant External Links for MIR1292 Gene

GeneLoc Exon Structure for
MIR1292
ECgene alternative splicing isoforms for
MIR1292

Expression for MIR1292 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR1292 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR1292 Gene:

MIR1292
genes like me logo Genes that share expression patterns with MIR1292: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR1292 Gene

Orthologs for MIR1292 Gene

Evolution for MIR1292 Gene

ENSEMBL:
Gene Tree for MIR1292 (if available)
TreeFam:
Gene Tree for MIR1292 (if available)

No data available for Orthologs for MIR1292 Gene

Paralogs for MIR1292 Gene

No data available for Paralogs for MIR1292 Gene

Variants for MIR1292 Gene

Sequence variations from dbSNP and Humsavar for MIR1292 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs2073194 Likely benign 2,653,290(-) AGCAC(A/C/G/T)GACTC nc-transcript-variant, downstream-variant-500B, upstream-variant-2KB, reference, synonymous-codon
rs1000029440 -- 2,652,363(+) ACCCC(A/G)AAAGG nc-transcript-variant, upstream-variant-2KB
rs1000464675 -- 2,652,464(+) GAAAA(A/G)GCCCG nc-transcript-variant, upstream-variant-2KB
rs1001075836 -- 2,652,839(+) CGTTC(C/T)AGGTG intron-variant, nc-transcript-variant, upstream-variant-2KB
rs1002783952 -- 2,653,036(+) GGGGC(A/G)GGGGG intron-variant, downstream-variant-500B, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR1292 Gene

Variant ID Type Subtype PubMed ID
esv3644998 CNV gain 21293372
nsv1057464 CNV gain 25217958
nsv470535 CNV gain 18288195

Relevant External Links for MIR1292 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR1292

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR1292 Gene

Disorders for MIR1292 Gene

MalaCards: The human disease database

(1) MalaCards diseases for MIR1292 Gene - From: GeneCards

Disorder Aliases PubMed IDs
spinocerebellar ataxia 36
  • spinocerebellar ataxia type 36
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for MIR1292

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR1292
genes like me logo Genes that share disorders with MIR1292: view

No data available for UniProtKB/Swiss-Prot and Genatlas for MIR1292 Gene

Publications for MIR1292 Gene

  1. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A. … Griffiths-Jones S. (Nucleic Acids Res. 2011) 3 64
  2. Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells. (PMID: 18285502) Morin R.D. … Marra M.A. (Genome Res. 2008) 3 64
  3. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR1292 Gene

Sources for MIR1292 Gene

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