Free for academic non-profit institutions. Other users need a Commercial license

Aliases for MIR1282 Gene

Subcategory (RNA class) for MIR1282 Gene

undefined

Quality Score for this RNA gene is

8.2

Aliases for MIR1282 Gene

  • MicroRNA 1282 2 3 5
  • Hsa-Mir-1282 3
  • MIRN1282 3

External Ids for MIR1282 Gene

Previous HGNC Symbols for MIR1282 Gene

  • MIRN1282

Previous GeneCards Identifiers for MIR1282 Gene

  • GC00U923133
  • GC15M041876
  • GC15M044085

Summaries for MIR1282 Gene

Entrez Gene Summary for MIR1282 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR1282 Gene

MIR1282 (MicroRNA 1282) is an RNA Gene, and is affiliated with the undefined RNA class.

fRNAdb sequence ontologies for MIR1282 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

Additional gene information for MIR1282 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for MIR1282 Gene

Genomics for MIR1282 Gene

GeneHancer (GH) Regulatory Elements for MIR1282 Gene

Promoters and enhancers for MIR1282 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15I043769 Enhancer 0.6 ENCODE 12 +24.0 23961 0.2 CTCF FOXA2 TEAD1 FOXA3 TEAD4 TRIM22 ZNF384 RAD21 RFX5 MAFF MIR1282 HYPK SERF2 PDIA3 CATSPER2P1
GH15I043749 Enhancer 0.6 ENCODE 11.8 +43.6 43554 1.7 ZNF121 PKNOX1 ZNF384 ATF7 PRDM10 ELF1 PRDM1 ZNF18 STRC SERF2 MIR1282 HYPK CATSPER2P1 PDIA3
GH15I043434 Enhancer 0.5 ENCODE 10.2 +359.1 359111 0.4 ZNF639 ZNF766 ZBTB11 GABPA ZSCAN29 TUBGCP4 MIR1282 HYPK SERF2 PIR42778 PIR48108 TP53BP1
GH15I043762 Enhancer 0.4 ENCODE 11.6 +30.7 30722 1.7 PAF1 ZNF316 MAFK ADAL MIR1282 HYPK SERINC4 ZSCAN29 TUBGCP4 SERF2 PDIA3 CATSPER2P1
GH15I043791 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE 0.8 -2.7 -2736 10.5 CLOCK MLX DMAP1 YY1 SLC30A9 ZNF213 E2F8 SP3 NFYC MEF2D GC15M043788 SERINC4 PIR54305 HYPK GC15P043795 SERF2 SPG11 CTDSPL2 ENSG00000259563 RPS3AP47
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MIR1282 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR1282 Gene

Genomic Locations for MIR1282 Gene
chr15:43,793,659-43,793,759
(GRCh38/hg38)
Size:
101 bases
Orientation:
Minus strand
chr15:44,085,857-44,085,957
(GRCh37/hg19)

Genomic View for MIR1282 Gene

Genes around MIR1282 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR1282 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR1282 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR1282 Gene

ORGUL Member Location for MIR1282 Gene

ORGUL Member Location for MIR1282 gene

Proteins for MIR1282 Gene

Post-translational modifications for MIR1282 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR1282 Gene

Domains & Families for MIR1282 Gene

Gene Families for MIR1282 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR1282: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR1282 Gene

Function for MIR1282 Gene

Animal Model Products

miRNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR1282 Gene

Localization for MIR1282 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR1282 Gene

Pathways & Interactions for MIR1282 Gene

SuperPathways for MIR1282 Gene

No Data Available

Interacting Proteins for MIR1282 Gene

Gene Ontology (GO) - Biological Process for MIR1282 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR1282 Gene

Drugs & Compounds for MIR1282 Gene

No Compound Related Data Available

Transcripts for MIR1282 Gene

mRNA/cDNA for MIR1282 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR1282 Gene

No ASD Table

Relevant External Links for MIR1282 Gene

GeneLoc Exon Structure for
MIR1282
ECgene alternative splicing isoforms for
MIR1282

Expression for MIR1282 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR1282 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR1282 Gene:

MIR1282
genes like me logo Genes that share expression patterns with MIR1282: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR1282 Gene

Orthologs for MIR1282 Gene

Evolution for MIR1282 Gene

ENSEMBL:
Gene Tree for MIR1282 (if available)
TreeFam:
Gene Tree for MIR1282 (if available)

No data available for Orthologs for MIR1282 Gene

Paralogs for MIR1282 Gene

No data available for Paralogs for MIR1282 Gene

Variants for MIR1282 Gene

Sequence variations from dbSNP and Humsavar for MIR1282 Gene

SNP ID Clin Chr 15 pos Variation AA Info Type
rs1001688292 -- 43,793,408(-) G/T downstream_transcript_variant
rs1002691442 -- 43,794,588(-) G/A upstream_transcript_variant
rs1002792741 -- 43,795,252(-) C/T upstream_transcript_variant
rs1003110455 -- 43,795,579(-) G/C upstream_transcript_variant
rs1003348928 -- 43,794,448(-) G/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MIR1282 Gene

Variant ID Type Subtype PubMed ID
esv2760028 CNV gain+loss 17122850
nsv1036318 CNV gain 25217958

Additional Variant Information for MIR1282 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR1282

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR1282 Gene

Disorders for MIR1282 Gene

Additional Disease Information for MIR1282

No disorders were found for MIR1282 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR1282 Gene

Publications for MIR1282 Gene

  1. Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells. (PMID: 18285502) Morin RD … Marra MA (Genome research 2008) 3 58
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 58
  3. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen JS … Haussler D (PLoS computational biology 2006) 1
  4. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for MIR1282 Gene

Sources for MIR1282 Gene

Content
Loading form....