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Aliases for MIR1282 Gene

Subcategory (RNA class) for MIR1282 Gene

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Quality Score for this RNA gene is

8.2

Aliases for MIR1282 Gene

  • MicroRNA 1282 2 3 5
  • Hsa-Mir-1282 3
  • MIRN1282 3

External Ids for MIR1282 Gene

Previous HGNC Symbols for MIR1282 Gene

  • MIRN1282

Previous GeneCards Identifiers for MIR1282 Gene

  • GC00U923133
  • GC15M041876
  • GC15M044085

Summaries for MIR1282 Gene

Entrez Gene Summary for MIR1282 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR1282 Gene

MIR1282 (MicroRNA 1282) is an RNA Gene, and is affiliated with the undefined RNA class.

fRNAdb sequence ontologies for MIR1282 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for MIR1282 Gene

Genomics for MIR1282 Gene

Regulatory Elements for MIR1282 Gene

Enhancers for MIR1282 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15G043769 0.7 ENCODE 12 +24.0 23962 0.2 CTCF FOXA2 TEAD1 FOXA3 TRIM22 ZNF384 RAD21 RFX5 FOXA1 MAFF MIR1282 HYPK SERF2 CATSPER2P1
GH15G043749 0.7 ENCODE 11.8 +43.6 43555 1.7 PKNOX1 MXI1 TBL1XR1 ZNF384 ZNF121 IRF1 RELB PRDM10 CREM PRDM1 STRC SERF2 MIR1282 HYPK CATSPER2P1
GH15G043762 0.5 ENCODE 11.5 +30.7 30723 1.7 PAF1 ZNF316 MAFK ADAL MIR1282 HYPK SERINC4 TUBGCP4 ZSCAN29 SERF2 CATSPER2P1
GH15G043434 0.5 ENCODE 10.1 +359.1 359112 0.4 ZNF639 ZNF766 ZNF589 ZBTB11 GABPA ZSCAN29 TUBGCP4 SERF2 MIR1282 HYPK PIR42778 PIR48108
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR1282 on UCSC Golden Path with GeneCards custom track

Promoters for MIR1282 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000075874 1159 1601 HDGF PKNOX1 MLX CREB3L1 AGO1 WRNIP1 ARID4B SIN3A DMAP1 YY1

Genomic Location for MIR1282 Gene

Chromosome:
15
Start:
43,793,659 bp from pter
End:
43,793,759 bp from pter
Size:
101 bases
Orientation:
Minus strand

Genomic View for MIR1282 Gene

Genes around MIR1282 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR1282 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR1282 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR1282 Gene

ORGUL Member Location for MIR1282 Gene

ORGUL Member Location for MIR1282 gene

Proteins for MIR1282 Gene

Post-translational modifications for MIR1282 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR1282 Gene

Domains & Families for MIR1282 Gene

Gene Families for MIR1282 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR1282: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR1282 Gene

Function for MIR1282 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR1282 Gene

Localization for MIR1282 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR1282 Gene

Pathways & Interactions for MIR1282 Gene

SuperPathways for MIR1282 Gene

No Data Available

Interacting Proteins for MIR1282 Gene

Gene Ontology (GO) - Biological Process for MIR1282 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR1282 Gene

Drugs & Compounds for MIR1282 Gene

No Compound Related Data Available

Transcripts for MIR1282 Gene

mRNA/cDNA for MIR1282 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR1282 Gene

No ASD Table

Relevant External Links for MIR1282 Gene

GeneLoc Exon Structure for
MIR1282
ECgene alternative splicing isoforms for
MIR1282

Expression for MIR1282 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR1282 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR1282 Gene:

MIR1282
genes like me logo Genes that share expression patterns with MIR1282: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR1282 Gene

Orthologs for MIR1282 Gene

Evolution for MIR1282 Gene

ENSEMBL:
Gene Tree for MIR1282 (if available)
TreeFam:
Gene Tree for MIR1282 (if available)

No data available for Orthologs for MIR1282 Gene

Paralogs for MIR1282 Gene

No data available for Paralogs for MIR1282 Gene

Variants for MIR1282 Gene

Sequence variations from dbSNP and Humsavar for MIR1282 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs1001688292 -- 43,793,408(+) TGTTC(G/T)GTTCT intron-variant, downstream-variant-500B
rs1002691442 -- 43,794,588(+) TTCTG(A/G)GCTTC intron-variant, nc-transcript-variant, upstream-variant-2KB, utr-variant-3-prime
rs1002792741 -- 43,795,252(+) AAGGG(C/T)CTTAG intron-variant, nc-transcript-variant, upstream-variant-2KB, utr-variant-3-prime
rs1003110455 -- 43,795,579(+) CTGCT(C/G)AAACA intron-variant, nc-transcript-variant, upstream-variant-2KB, utr-variant-3-prime
rs1003348928 -- 43,794,448(+) CAAGC(G/T)TTCAC intron-variant, nc-transcript-variant, upstream-variant-2KB, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for MIR1282 Gene

Variant ID Type Subtype PubMed ID
esv2760028 CNV gain+loss 17122850
nsv1036318 CNV gain 25217958

Relevant External Links for MIR1282 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR1282

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR1282 Gene

Disorders for MIR1282 Gene

Relevant External Links for MIR1282

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR1282

No disorders were found for MIR1282 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR1282 Gene

Publications for MIR1282 Gene

  1. Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells. (PMID: 18285502) Morin R.D. … Marra M.A. (Genome Res. 2008) 3 64
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64
  3. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen J.S. … Haussler D. (PLoS Comput. Biol. 2006) 1
  4. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang K.C. … Mattick J.S. (Nucleic Acids Res. 2005) 1

Products for MIR1282 Gene

Sources for MIR1282 Gene

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