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Aliases for MIR1272 Gene

Subcategory (RNA class) for MIR1272 Gene

miRNA

Quality Score for this RNA gene is

8

Aliases for MIR1272 Gene

  • MicroRNA 1272 2 3 5
  • Hsa-Mir-1272 3
  • Mir-1272 3
  • MIRN1272 3

External Ids for MIR1272 Gene

Previous HGNC Symbols for MIR1272 Gene

  • MIRN1272

Previous GeneCards Identifiers for MIR1272 Gene

  • GC00U922969
  • GC15M062842
  • GC15M065054

Summaries for MIR1272 Gene

Entrez Gene Summary for MIR1272 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR1272 Gene

MIR1272 (MicroRNA 1272) is an RNA Gene, and is affiliated with the miRNA class.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR1272 Gene

Genomics for MIR1272 Gene

Regulatory Elements for MIR1272 Gene

Enhancers for MIR1272 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15G064730 1.5 Ensembl ENCODE dbSUPER 11.8 +30.5 30540 2.0 PKNOX1 FOXA2 ARID4B SIN3A BRCA1 ZNF48 TCF12 SLC30A9 ZNF143 ZNF207 TRIP4 MIR1272 RBPMS2 RNU6-549P PLEKHO2 ENSG00000249240 PIF1 SNX1 OAZ2
GH15G065053 1.4 Ensembl ENCODE dbSUPER 9.6 -292.7 -292664 2.4 PKNOX1 ARID4B SIN3A ZNF48 YY1 ZNF143 DEK SP5 MXD4 REST UBAP1L SPG21 MTFMT RASL12 KBTBD13 RNU5B-1 RBPMS2 MIR1272 ENSG00000277351 PIR51727
GH15G064716 1.2 Ensembl ENCODE dbSUPER 10.9 +44.5 44538 2.8 CTCF ZSCAN4 BACH1 EBF1 RAD21 ZFHX2 ZNF316 NFE2 MAFK NFE2L2 TRIP4 RBPMS2 RNU6-549P MIR1272 PLEKHO2 ENSG00000249240 OAZ2
GH15G064801 1 Ensembl ENCODE 12.4 -39.8 -39795 1.5 PKNOX1 ATF1 CEBPG RARA TCF12 ZNF121 ZNF600 CREM GATAD2A PAF1 RBPMS2 TRIP4 PIF1 MIR1272
GH15G064727 1 ENCODE dbSUPER 11.8 +34.3 34258 0.7 CTCF ZNF792 SAP130 ARID4B ZNF2 RAD21 RFX5 TEAD3 GATAD1 POLR2A TRIP4 MIR1272 RBPMS2 RNU6-549P ENSG00000249240 PLEKHO2 OAZ2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR1272 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR1272 Gene

Chromosome:
15
Start:
64,762,387 bp from pter
End:
64,762,515 bp from pter
Size:
129 bases
Orientation:
Minus strand

Genomic View for MIR1272 Gene

Genes around MIR1272 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR1272 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR1272 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR1272 Gene

ORGUL Member Location for MIR1272 Gene

ORGUL Member Location for MIR1272 gene

Proteins for MIR1272 Gene

Post-translational modifications for MIR1272 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR1272 Gene

Domains & Families for MIR1272 Gene

Gene Families for MIR1272 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR1272: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR1272 Gene

Function for MIR1272 Gene

Animal Model Products

miRNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR1272 Gene

Localization for MIR1272 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR1272 Gene

Pathways & Interactions for MIR1272 Gene

SuperPathways for MIR1272 Gene

No Data Available

Interacting Proteins for MIR1272 Gene

Gene Ontology (GO) - Biological Process for MIR1272 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR1272 Gene

Drugs & Compounds for MIR1272 Gene

No Compound Related Data Available

Transcripts for MIR1272 Gene

mRNA/cDNA for MIR1272 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR1272 Gene

No ASD Table

Relevant External Links for MIR1272 Gene

GeneLoc Exon Structure for
MIR1272
ECgene alternative splicing isoforms for
MIR1272

Expression for MIR1272 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR1272 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR1272 Gene:

MIR1272
genes like me logo Genes that share expression patterns with MIR1272: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR1272 Gene

Orthologs for MIR1272 Gene

Evolution for MIR1272 Gene

ENSEMBL:
Gene Tree for MIR1272 (if available)
TreeFam:
Gene Tree for MIR1272 (if available)

No data available for Orthologs for MIR1272 Gene

Paralogs for MIR1272 Gene

No data available for Paralogs for MIR1272 Gene

Variants for MIR1272 Gene

Sequence variations from dbSNP and Humsavar for MIR1272 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs1000117598 -- 64,762,421(+) TGCAG(C/T)CTACA intron-variant, nc-transcript-variant, upstream-variant-2KB
rs1000453476 -- 64,762,060(+) TTGCC(C/T)AAGCT intron-variant, downstream-variant-500B, upstream-variant-2KB
rs1002006649 -- 64,762,340(+) CACTA(A/G)CTATG intron-variant, downstream-variant-500B, upstream-variant-2KB
rs1002620081 -- 64,764,223(+) CAGAT(C/G)TACTG intron-variant, upstream-variant-2KB
rs1003556980 -- 64,762,735(+) TCAGG(A/T)CCCGT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR1272 Gene

Variant ID Type Subtype PubMed ID
dgv31n68 CNV loss 17160897
nsv528510 CNV loss 19592680
nsv569703 CNV loss 21841781

Relevant External Links for MIR1272 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR1272

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR1272 Gene

Disorders for MIR1272 Gene

Relevant External Links for MIR1272

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR1272

No disorders were found for MIR1272 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR1272 Gene

Publications for MIR1272 Gene

  1. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A. … Griffiths-Jones S. (Nucleic Acids Res. 2011) 3 64
  2. Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells. (PMID: 18285502) Morin R.D. … Marra M.A. (Genome Res. 2008) 3 64
  3. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR1272 Gene

Sources for MIR1272 Gene

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