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Aliases for MIR125B1 Gene

Subcategory (RNA class) for MIR125B1 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR125B1 Gene

  • MicroRNA 125b-1 2 3 5
  • Hsa-Mir-125b-1 3
  • Mir-125b-1 3
  • MIRN125B1 3

External Ids for MIR125B1 Gene

Previous HGNC Symbols for MIR125B1 Gene

  • MIRN125B1

Previous GeneCards Identifiers for MIR125B1 Gene

  • GC11M121478
  • GC11M121970

Summaries for MIR125B1 Gene

Entrez Gene Summary for MIR125B1 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR125B1 Gene

MIR125B1 (MicroRNA 125b-1) is an RNA Gene, and is affiliated with the miRNA class. Diseases associated with MIR125B1 include Familial Breast Cancer. Among its related pathways are MicroRNAs in cardiomyocyte hypertrophy and TFs Regulate miRNAs related to cardiac hypertrophy.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR125B1 Gene

Genomics for MIR125B1 Gene

Regulatory Elements for MIR125B1 Gene


Promoters for MIR125B1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around MIR125B1 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR125B1 Gene

Chromosome:
11
Start:
122,099,757 bp from pter
End:
122,099,844 bp from pter
Size:
88 bases
Orientation:
Minus strand

Genomic View for MIR125B1 Gene

Genes around MIR125B1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR125B1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR125B1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR125B1 Gene

Proteins for MIR125B1 Gene

Post-translational modifications for MIR125B1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR125B1 Gene

Domains & Families for MIR125B1 Gene

Gene Families for MIR125B1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR125B1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR125B1 Gene

Function for MIR125B1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR125B1 Gene

Localization for MIR125B1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR125B1 Gene

Pathways & Interactions for MIR125B1 Gene

genes like me logo Genes that share pathways with MIR125B1: view

Pathways by source for MIR125B1 Gene

1 KEGG pathway for MIR125B1 Gene

Interacting Proteins for MIR125B1 Gene

Gene Ontology (GO) - Biological Process for MIR125B1 Gene

None

No data available for SIGNOR curated interactions for MIR125B1 Gene

Drugs & Compounds for MIR125B1 Gene

No Compound Related Data Available

Transcripts for MIR125B1 Gene

mRNA/cDNA for MIR125B1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR125B1 Gene

No ASD Table

Relevant External Links for MIR125B1 Gene

GeneLoc Exon Structure for
MIR125B1
ECgene alternative splicing isoforms for
MIR125B1

Expression for MIR125B1 Gene

mRNA expression in normal human tissues for MIR125B1 Gene

genes like me logo Genes that share expression patterns with MIR125B1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for MIR125B1 Gene

Orthologs for MIR125B1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for MIR125B1 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia bta-mir-125b-1 36
  • 94 (a)
OneToOne
dog
(Canis familiaris)
Mammalia cfa-mir-125b-1 36
  • 98 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia mdo-mir-125b-2 36
  • 97 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Mir125b-1 36
  • 99 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia oan-mir-125 36
  • 78 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia ptr-mir-125b-1 36
  • 100 (a)
OneToOne
chicken
(Gallus gallus)
Aves -- 36
  • 93 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia aca-mir-125b-1 36
  • 90 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii dre-mir-125b-2 36
  • 76 (a)
OneToOne
Species with no ortholog for MIR125B1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for MIR125B1 Gene

ENSEMBL:
Gene Tree for MIR125B1 (if available)
TreeFam:
Gene Tree for MIR125B1 (if available)

Paralogs for MIR125B1 Gene

No data available for Paralogs for MIR125B1 Gene

Variants for MIR125B1 Gene

Structural Variations from Database of Genomic Variants (DGV) for MIR125B1 Gene

Variant ID Type Subtype PubMed ID
dgv17n68 CNV Gain 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Variation tolerance and Relevant External Links for MIR125B1 Gene

Disorders for MIR125B1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for MIR125B1 Gene - From: GeneCards

Disorder Aliases PubMed IDs
familial breast cancer
  • breast cancer, familial
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for MIR125B1

Genetic Association Database (GAD)
MIR125B1
Human Genome Epidemiology (HuGE) Navigator
MIR125B1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR125B1
genes like me logo Genes that share disorders with MIR125B1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for MIR125B1 Gene

Publications for MIR125B1 Gene

  1. Novel genetic variants in microRNA genes and familial breast cancer. (PMID: 19048628) Shen J. … Zhao H. (Int. J. Cancer 2009) 3 48 67
  2. NRF2-driven miR-125B1 and miR-29B1 transcriptional regulation controls a novel anti-apoptotic miRNA regulatory network for AML survival. (PMID: 25323587) Shah N.M. … Rushworth S.A. (Cell Death Differ. 2015) 3
  3. Long non-coding RNA HOTTIP is frequently up-regulated in hepatocellular carcinoma and is targeted by tumour suppressive miR-125b. (PMID: 25424744) Tsang F.H. … Wong C.M. (Liver Int. 2015) 3
  4. The expression of miR-125b regulates angiogenesis during the recovery of heat-denatured HUVECs. (PMID: 25468475) Zhou S. … Huang X. (Burns 2015) 3
  5. ALCAM is indirectly modulated by miR-125b in MCF7 cells. (PMID: 25539763) Akman H.B. … Erson-Bensan A.E. (Tumour Biol. 2015) 3

Products for MIR125B1 Gene

Sources for MIR125B1 Gene

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