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Aliases for MIR1200 Gene

Subcategory (RNA class) for MIR1200 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR1200 Gene

  • MicroRNA 1200 2 3 5
  • Hsa-Mir-1200 3
  • MIRN1200 3

External Ids for MIR1200 Gene

Previous HGNC Symbols for MIR1200 Gene

  • MIRN1200

Previous GeneCards Identifiers for MIR1200 Gene

  • GC00U922965

Summaries for MIR1200 Gene

Entrez Gene Summary for MIR1200 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR1200 Gene

MIR1200 (MicroRNA 1200) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR1200 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR1200 Gene

Genomics for MIR1200 Gene

GeneHancer (GH) Regulatory Elements for MIR1200 Gene

Promoters and enhancers for MIR1200 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I036969 Enhancer 1.3 Ensembl ENCODE dbSUPER 11.4 -51.5 -51521 3.6 FOXA2 MLX ARID4B ETS1 YY1 SLC30A9 RXRA SP5 ZHX2 MIER2 MIR1200 ELMO1-AS1 EEPD1 PIR62652 ELMO1
GH07I036745 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 10 +171.1 171051 4.9 TAF1 MAX EBF1 CEBPG ZIC2 RAD21 ZBTB40 YY1 VEZF1 HNF4G AOAH MIR1200 ENSG00000229424 ENSG00000272984
GH07I037030 Enhancer 1.4 FANTOM5 Ensembl ENCODE 9.5 -113.1 -113123 3.6 PKNOX1 ATF1 FOXA2 ARID4B FEZF1 DMAP1 ETS1 ELK1 FOS DEK GC07P037031 ELMO1-AS1 MIR1200 ELMO1 AOAH RPS17P13
GH07I036949 Enhancer 1.1 Ensembl ENCODE 11.5 -30.6 -30569 0.8 ELF3 FOXA2 MLX NFIB ARID4B ZNF48 ZSCAN9 RAD21 RARA CREM MIR1200 PIR62652 ELMO1
GH07I037181 Enhancer 1.2 FANTOM5 Ensembl ENCODE 9.5 -262.7 -262701 0.7 ELF3 RB1 ARID4B IRF4 RAD21 ELK1 ARID2 ZNF143 ATF7 RCOR1 MIR1200 RPS17P13 PIR57066 ELMO1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MIR1200 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR1200 Gene

Genomic Locations for MIR1200 Gene
chr7:36,919,357-36,919,432
(GRCh38/hg38)
Size:
76 bases
Orientation:
Minus strand
chr7:36,958,962-36,959,037
(GRCh37/hg19)

Genomic View for MIR1200 Gene

Genes around MIR1200 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR1200 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR1200 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR1200 Gene

Proteins for MIR1200 Gene

Post-translational modifications for MIR1200 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR1200 Gene

Domains & Families for MIR1200 Gene

Gene Families for MIR1200 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR1200: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR1200 Gene

Function for MIR1200 Gene

Phenotypes From GWAS Catalog for MIR1200 Gene

Animal Model Products

miRNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR1200 Gene

Localization for MIR1200 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR1200 Gene

Pathways & Interactions for MIR1200 Gene

SuperPathways for MIR1200 Gene

No Data Available

Interacting Proteins for MIR1200 Gene

Gene Ontology (GO) - Biological Process for MIR1200 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR1200 Gene

Drugs & Compounds for MIR1200 Gene

No Compound Related Data Available

Transcripts for MIR1200 Gene

mRNA/cDNA for MIR1200 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR1200 Gene

No ASD Table

Relevant External Links for MIR1200 Gene

GeneLoc Exon Structure for
MIR1200
ECgene alternative splicing isoforms for
MIR1200

Expression for MIR1200 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR1200 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR1200 Gene:

MIR1200
genes like me logo Genes that share expression patterns with MIR1200: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR1200 Gene

Orthologs for MIR1200 Gene

Evolution for MIR1200 Gene

ENSEMBL:
Gene Tree for MIR1200 (if available)
TreeFam:
Gene Tree for MIR1200 (if available)

No data available for Orthologs for MIR1200 Gene

Paralogs for MIR1200 Gene

No data available for Paralogs for MIR1200 Gene

Variants for MIR1200 Gene

Sequence variations from dbSNP and Humsavar for MIR1200 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000017004 -- 36,919,932(-) C/T upstream_transcript_variant
rs1000028281 -- 36,920,156(-) C/A upstream_transcript_variant
rs1000426144 -- 36,918,912(-) T/A downstream_transcript_variant
rs1000730842 -- 36,920,046(-) C/A/G upstream_transcript_variant
rs1000791717 -- 36,920,428(-) T/C upstream_transcript_variant

Additional Variant Information for MIR1200 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR1200

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MIR1200 Gene

Disorders for MIR1200 Gene

Additional Disease Information for MIR1200

No disorders were found for MIR1200 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR1200 Gene

Publications for MIR1200 Gene

  1. Small RNAs analysis in CLL reveals a deregulation of miRNA expression and novel miRNA candidates of putative relevance in CLL pathogenesis. (PMID: 17989717) Marton S … Cayota A (Leukemia 2008) 3 58
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 58

Products for MIR1200 Gene

Sources for MIR1200 Gene

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