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Aliases for MIR1200 Gene

Subcategory (RNA class) for MIR1200 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR1200 Gene

  • MicroRNA 1200 2 3 5
  • Hsa-Mir-1200 3
  • MIRN1200 3

External Ids for MIR1200 Gene

Previous HGNC Symbols for MIR1200 Gene

  • MIRN1200

Previous GeneCards Identifiers for MIR1200 Gene

  • GC00U922965

Summaries for MIR1200 Gene

Entrez Gene Summary for MIR1200 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR1200 Gene

MIR1200 (MicroRNA 1200) is an RNA Gene, and is affiliated with the miRNA class.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR1200 Gene

Genomics for MIR1200 Gene

Regulatory Elements for MIR1200 Gene

Enhancers for MIR1200 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07G036969 1.5 Ensembl ENCODE dbSUPER 11.4 -51.5 -51521 3.6 HNRNPUL1 FOXA2 ATF1 MLX ARID4B YY1 SLC30A9 SP5 ZHX2 MIER2 MIR1200 ELMO1-AS1 EEPD1 PIR62652
GH07G036745 1.7 FANTOM5 Ensembl ENCODE dbSUPER 10 +171.1 171052 4.9 CTCF TAF1 MAX CEBPG EBF1 ZIC2 RAD21 YY1 POLR2A ZNF143 AOAH MIR1200 ENSG00000229424 ENSG00000272984
GH07G037030 1.5 FANTOM5 Ensembl ENCODE 9.4 -113.1 -113124 3.6 PKNOX1 FOXA2 ATF1 ARID4B SIN3A FEZF1 DMAP1 ELK1 GATA2 FOS ELMO1-AS1 MIR1200 ELMO1 AOAH GC07P037031 RPS17P13
GH07G036949 1.2 Ensembl ENCODE 11.5 -30.6 -30569 0.8 ELF3 FOXA2 MLX NFIB ARID4B ZNF48 ZSCAN9 RAD21 RARA CREM MIR1200 PIR62652
GH07G037181 1.4 FANTOM5 Ensembl ENCODE 9.5 -262.7 -262702 0.7 ELF3 ARID4B RAD21 ELK1 ZNF143 CREM MIXL1 ZNF654 CEBPB REST MIR1200 RPS17P13 PIR57066
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR1200 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR1200 Gene

Chromosome:
7
Start:
36,919,357 bp from pter
End:
36,919,432 bp from pter
Size:
76 bases
Orientation:
Minus strand

Genomic View for MIR1200 Gene

Genes around MIR1200 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR1200 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR1200 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR1200 Gene

Proteins for MIR1200 Gene

Post-translational modifications for MIR1200 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR1200 Gene

Domains & Families for MIR1200 Gene

Gene Families for MIR1200 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR1200: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR1200 Gene

Function for MIR1200 Gene

Animal Model Products

miRNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR1200 Gene

Localization for MIR1200 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR1200 Gene

Pathways & Interactions for MIR1200 Gene

SuperPathways for MIR1200 Gene

No Data Available

Interacting Proteins for MIR1200 Gene

Gene Ontology (GO) - Biological Process for MIR1200 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR1200 Gene

Transcripts for MIR1200 Gene

mRNA/cDNA for MIR1200 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR1200 Gene

No ASD Table

Relevant External Links for MIR1200 Gene

GeneLoc Exon Structure for
MIR1200
ECgene alternative splicing isoforms for
MIR1200

Expression for MIR1200 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR1200 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR1200 Gene:

MIR1200
genes like me logo Genes that share expression patterns with MIR1200: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR1200 Gene

Orthologs for MIR1200 Gene

Evolution for MIR1200 Gene

ENSEMBL:
Gene Tree for MIR1200 (if available)
TreeFam:
Gene Tree for MIR1200 (if available)

No data available for Orthologs for MIR1200 Gene

Paralogs for MIR1200 Gene

No data available for Paralogs for MIR1200 Gene

Variants for MIR1200 Gene

Sequence variations from dbSNP and Humsavar for MIR1200 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs1000017004 -- 36,919,932(+) TGTCA(C/T)GACTG intron-variant, upstream-variant-2KB
rs1000028281 -- 36,920,156(+) CAGGC(A/C)ACCAC intron-variant, upstream-variant-2KB
rs1000426144 -- 36,918,912(+) AATAT(A/T)TTTTT intron-variant, downstream-variant-500B
rs1000730842 -- 36,920,046(+) GATGT(A/C/G)CAATC intron-variant, upstream-variant-2KB
rs1000791717 -- 36,920,428(+) GTGGA(C/T)ATTAA intron-variant, upstream-variant-2KB

Relevant External Links for MIR1200 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR1200

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MIR1200 Gene

Disorders for MIR1200 Gene

Relevant External Links for MIR1200

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR1200

No disorders were found for MIR1200 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR1200 Gene

Publications for MIR1200 Gene

  1. Small RNAs analysis in CLL reveals a deregulation of miRNA expression and novel miRNA candidates of putative relevance in CLL pathogenesis. (PMID: 17989717) Marton S. … Cayota A. (Leukemia 2008) 3 64
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR1200 Gene

Sources for MIR1200 Gene

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