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Aliases for MIR10A Gene

Subcategory (RNA class) for MIR10A Gene

miRNA

Quality Score for this RNA gene is

9.2

Aliases for MIR10A Gene

  • MicroRNA 10a 2 3 5
  • Hsa-Mir-10a 3
  • MiRNA10A 3
  • Mir-10a 3
  • MIRN10A 3

External Ids for MIR10A Gene

Previous HGNC Symbols for MIR10A Gene

  • MIRN10A

Previous GeneCards Identifiers for MIR10A Gene

  • GC17M044015
  • GC17M046657
  • GC17M046665

Summaries for MIR10A Gene

Entrez Gene Summary for MIR10A Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR10A Gene

MIR10A (MicroRNA 10a) is an RNA Gene, and is affiliated with the miRNA class. Among its related pathways are Parkinsons Disease Pathway and MicroRNAs in cancer.

fRNAdb sequence ontologies for MIR10A Gene - the ORGUL cluster for this gene includes several descriptions:

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

  • miRNA: Small, ~22-nt, RNA molecule that is the endogenous transcript of a miRNA gene. Micro RNAs are produced from precursor molecules (SO:0000647) that can form local hairpin structures, which ordinarily are processed (via the Dicer pathway) such that a single miRNA molecule accumulates from one arm of a hairpin precursor molecule. Micro RNAs may trigger the cleavage of their target molecules or act as translational repressors.

View fRNAdb secondary structures for MIR10A

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for MIR10A Gene

Genomics for MIR10A Gene

Regulatory Elements for MIR10A Gene

Enhancers for MIR10A Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17G048491 1.9 FANTOM5 Ensembl ENCODE dbSUPER 12.1 +87.2 87249 2.0 PKNOX1 CREB3L1 ARNT SIN3A FEZF1 ZNF2 ZNF766 ZNF143 ZNF207 ZNF548 HOXB2 SKAP1 HOXB4 MIR10A HOXB3 HOXB1 HOXB-AS1 HOXB-AS3 HOXB-AS2 SCRN2
GH17G048505 1.5 FANTOM5 ENCODE dbSUPER 11.8 +73.9 73904 1.8 HDAC1 PKNOX1 ZSCAN4 BMI1 RAD21 ZNF366 RCOR1 RELB FOS IKZF2 HOXB2 SKAP1 HOXB-AS1 HOXB1 MIR10A HOXB4 HOXB3 HOXB-AS3 HOXB-AS2 LOC105371808
GH17G048471 1.3 Ensembl ENCODE dbSUPER 10.8 +107.3 107266 1.7 HDGF KLF17 FEZF1 SCRT2 FOS RELB IKZF2 GATAD2B TBX21 ZNF341 SKAP1 HOXB-AS2 HOXB3 MIR10A HOXB4 HOXB2 HOXB-AS1 HOXB1 MIR196A1 CDK5RAP3
GH17G048496 1 ENCODE dbSUPER 12.1 +81.8 81793 2.8 ESRRA KLF1 INSM2 KLF17 HIC1 CTBP1 ZSCAN5C FOS ZNF600 RCOR1 HOXB2 SKAP1 HOXB-AS1 MIR10A HOXB4 HOXB3 HOXB1 HOXB-AS2 HOXB-AS3 MIR1203
GH17G048494 0.9 ENCODE dbSUPER 12.1 +85.4 85364 1.0 ZNF645 PRDM2 ZNF664 ZSCAN16 ZBTB48 ZNF580 ZNF524 ZNF24 FOS ZNF600 HOXB2 SKAP1 HOXB4 MIR10A HOXB3 HOXB1 HOXB-AS1 HOXB-AS3 HOXB-AS2 ENSG00000206805
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR10A on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR10A Gene

Chromosome:
17
Start:
48,579,838 bp from pter
End:
48,579,947 bp from pter
Size:
110 bases
Orientation:
Minus strand

Genomic View for MIR10A Gene

Genes around MIR10A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR10A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR10A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR10A Gene

ORGUL Member Location for MIR10A Gene

ORGUL Member Location for MIR10A gene

Proteins for MIR10A Gene

Post-translational modifications for MIR10A Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR10A Gene

Domains & Families for MIR10A Gene

Gene Families for MIR10A Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR10A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR10A Gene

Function for MIR10A Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR10A Gene

Localization for MIR10A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR10A Gene

Pathways & Interactions for MIR10A Gene

genes like me logo Genes that share pathways with MIR10A: view

Pathways by source for MIR10A Gene

Interacting Proteins for MIR10A Gene

Gene Ontology (GO) - Biological Process for MIR10A Gene

None

No data available for SIGNOR curated interactions for MIR10A Gene

Drugs & Compounds for MIR10A Gene

No Compound Related Data Available

Transcripts for MIR10A Gene

fRNAdb Secondary structures for MIR10A Gene

  • FR084621

mRNA/cDNA for MIR10A Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR10A Gene

No ASD Table

Relevant External Links for MIR10A Gene

GeneLoc Exon Structure for
MIR10A
ECgene alternative splicing isoforms for
MIR10A

Expression for MIR10A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR10A Gene

mRNA differential expression in normal tissues according to GTEx for MIR10A Gene

This gene is overexpressed in Esophagus - Gastroesophageal Junction (x7.4), Esophagus - Muscularis (x5.2), and Colon - Sigmoid (x4.5).

NURSA nuclear receptor signaling pathways regulating expression of MIR10A Gene:

MIR10A
genes like me logo Genes that share expression patterns with MIR10A: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR10A Gene

Orthologs for MIR10A Gene

Evolution for MIR10A Gene

ENSEMBL:
Gene Tree for MIR10A (if available)
TreeFam:
Gene Tree for MIR10A (if available)

No data available for Orthologs for MIR10A Gene

Paralogs for MIR10A Gene

No data available for Paralogs for MIR10A Gene

Variants for MIR10A Gene

Sequence variations from dbSNP and Humsavar for MIR10A Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1000232979 -- 48,580,132(+) TTCAA(A/G)TAGCC intron-variant, upstream-variant-2KB
rs1000832381 -- 48,581,814(+) AGTCA(C/T)CACCT intron-variant, upstream-variant-2KB
rs1001458729 -- 48,579,777(+) AGACT(G/T)TCCTC intron-variant, downstream-variant-500B, upstream-variant-2KB
rs1001618462 -- 48,580,001(+) GTTTG(C/G)GGTGT intron-variant, upstream-variant-2KB
rs1001705407 -- 48,581,707(+) TGCCC(C/T)AGCAC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR10A Gene

Variant ID Type Subtype PubMed ID
dgv369n27 CNV loss 19166990
dgv5676n54 CNV loss 21841781
esv2758694 CNV gain 17122850
nsv833469 CNV loss 17160897
nsv833471 CNV gain 17160897

Relevant External Links for MIR10A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR10A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR10A Gene

Disorders for MIR10A Gene

Relevant External Links for MIR10A

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR10A

No disorders were found for MIR10A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR10A Gene

Publications for MIR10A Gene

  1. Vertebrate microRNA genes. (PMID: 12624257) Lim L.P. … Bartel D.P. (Science 2003) 1 3 64
  2. MicroRNAs 10a and 10b Regulate the Expression of Human Platelet Glycoprotein IbI+ for Normal Megakaryopoiesis. (PMID: 27834869) Zhang Z. … Peng Y. (Int J Mol Sci 2016) 3 64
  3. Plasma miR-10a: A Potential Biomarker for Coronary Artery Disease. (PMID: 27313333) Luo L. … Lin X. (Dis. Markers 2016) 3 64
  4. Long non-coding RNA TUSC7 acts a molecular sponge for miR-10a and suppresses EMT in hepatocellular carcinoma. (PMID: 27002617) Wang Y. … Guo C. (Tumour Biol. 2016) 3 64
  5. A SNP in pri-miR-10a is associated with recurrent spontaneous abortion in a Han-Chinese population. (PMID: 26824181) Li Y. … Xia H.F. (Oncotarget 2016) 3 64

Products for MIR10A Gene

Sources for MIR10A Gene

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