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Aliases for MIR100HG Gene

Subcategory (RNA class) for MIR100HG Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR100HG Gene

  • Mir-100-Let-7a-2 Cluster Host Gene 2 3 5
  • Mir-100-Let-7a-2 Cluster Host Gene (Non-Protein Coding) 2 3
  • Adipogenesis Down-Regulated Transcript 1 2 3
  • LncRNA Neuronal 2 2 3
  • Linc-NeD125 3
  • LncRNA-N2 3
  • AGD1 3

External Ids for MIR100HG Gene

Previous GeneCards Identifiers for MIR100HG Gene

  • GC11M121961
  • GC11M121902
  • GC11M122089

Summaries for MIR100HG Gene

Entrez Gene Summary for MIR100HG Gene

  • This gene produces long non-coding RNAs that act as regulators of cell proliferation. Alternative promoter usage and splicing results in multiple transcript variants. Some transcript variants may promote growth, while others may act to negatively regulate cell division. [provided by RefSeq, May 2016]

GeneCards Summary for MIR100HG Gene

MIR100HG (Mir-100-Let-7a-2 Cluster Host Gene) is an RNA Gene, and is affiliated with the miRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR100HG Gene

Genomics for MIR100HG Gene

Regulatory Elements for MIR100HG Gene

Enhancers for MIR100HG Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11F122090 0.5 Ensembl ENCODE 16.3 +458.1 458056 16.4 CTCF TEAD4 SIN3A EBF1 RAD21 POLR2A FOS MAFK TCF7L2 MTA2 MIR100HG GC11M122095 GC11M122101
GH11F122135 1.1 Ensembl ENCODE 11.6 +417.8 417845 7.3 JUN SIN3A BRCA1 ETS1 YY1 GATA3 POLR2A RERE HNF4G FOS BLID MIR100HG MIRLET7A2 GC11P122118
GH11F122043 1.2 FANTOM5 Ensembl ENCODE 11.2 +510.9 510921 3.6 JUND JUN FOS MAFK BLID MIR100HG MIR125B1 LOC105369537 GC11P122016
GH11F122153 0.6 Ensembl ENCODE 11.1 +394.2 394194 18.5 CTCF JUN BHLHE40 CHD1 MNT NR3C1 RAD21 JUND MAFF SMARCA4 BLID MIR100HG ENSG00000255015 UBASH3B MIR100 GC11M122154 GC11M122156 GC11P122184
GH11F122032 0.6 ENCODE 11 +523.0 522992 3.2 CEBPB BLID MIR100HG MIR125B1 GC11P122016 LOC105369537
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around MIR100HG on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR100HG Gene

Chromosome:
11
Start:
122,028,327 bp from pter
End:
122,556,721 bp from pter
Size:
528,395 bases
Orientation:
Minus strand

Genomic View for MIR100HG Gene

Genes around MIR100HG on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR100HG Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR100HG Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR100HG Gene

Proteins for MIR100HG Gene

Post-translational modifications for MIR100HG Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR100HG Gene

Domains & Families for MIR100HG Gene

Gene Families for MIR100HG Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR100HG: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR100HG Gene

Function for MIR100HG Gene

Phenotypes for MIR100HG Gene

GenomeRNAi human phenotypes for MIR100HG:
genes like me logo Genes that share phenotypes with MIR100HG: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR100HG Gene

Localization for MIR100HG Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR100HG Gene

Pathways & Interactions for MIR100HG Gene

SuperPathways for MIR100HG Gene

No Data Available

Interacting Proteins for MIR100HG Gene

Gene Ontology (GO) - Biological Process for MIR100HG Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR100HG Gene

Transcripts for MIR100HG Gene

Unigene Clusters for MIR100HG Gene

Mir-100-let-7a-2 cluster host gene (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MIR100HG Gene

No ASD Table

Relevant External Links for MIR100HG Gene

GeneLoc Exon Structure for
MIR100HG
ECgene alternative splicing isoforms for
MIR100HG

Expression for MIR100HG Gene

mRNA expression in normal human tissues for MIR100HG Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR100HG Gene:

MIR100HG

SOURCE GeneReport for Unigene cluster for MIR100HG Gene:

Hs.44098
genes like me logo Genes that share expression patterns with MIR100HG: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MIR100HG Gene

Orthologs for MIR100HG Gene

Evolution for MIR100HG Gene

ENSEMBL:
Gene Tree for MIR100HG (if available)
TreeFam:
Gene Tree for MIR100HG (if available)

No data available for Orthologs for MIR100HG Gene

Paralogs for MIR100HG Gene

No data available for Paralogs for MIR100HG Gene

Variants for MIR100HG Gene

Sequence variations from dbSNP and Humsavar for MIR100HG Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs10106445 -- 122,401,456(-) gcctg(C/T)tcact intron-variant
rs10128684 -- 122,349,912(+) AGAAC(C/G)ACCTT intron-variant
rs10128685 -- 122,349,946(+) CTCTC(A/C)AAGCT intron-variant
rs10160316 -- 122,331,815(+) gtata(G/T)tagag intron-variant
rs10160317 -- 122,331,823(+) gagac(A/G)gggtt intron-variant

Structural Variations from Database of Genomic Variants (DGV) for MIR100HG Gene

Variant ID Type Subtype PubMed ID
dgv17n68 CNV gain 17160897
esv275465 CNV gain+loss 21479260
esv3310060 CNV mobile element insertion 20981092
nsv1119921 CNV deletion 24896259
nsv476130 CNV novel sequence insertion 20440878
nsv477824 CNV novel sequence insertion 20440878

Relevant External Links for MIR100HG Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR100HG

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR100HG Gene

Disorders for MIR100HG Gene

Relevant External Links for MIR100HG

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR100HG

No disorders were found for MIR100HG Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR100HG Gene

Publications for MIR100HG Gene

  1. LincRNAs MONC and MIR100HG act as oncogenes in acute megakaryoblastic leukemia. (PMID: 25027842) Emmrich S. … Klusmann J.H. (Mol. Cancer 2014) 2 3 64
  2. Evaluation of BLID and LOC399959 as candidate genes for high myopia in the Chinese Han population. (PMID: 21031016) Zhao F. … Zhou X. (Mol. Vis. 2010) 2 3 64
  3. Transcripts of unknown function in multiple-signaling pathways involved in human stem cell differentiation. (PMID: 19531736) Kikuchi K. … Aizawa Y. (Nucleic Acids Res. 2009) 2 3 64
  4. Identification of linc-NeD125, a novel long non coding RNA that hosts miR-125b-1 and negatively controls proliferation of human neuroblastoma cells. (PMID: 26480000) Bevilacqua V. … Caffarelli E. (RNA Biol 2015) 3 64
  5. A genome-wide association analysis identified a novel susceptible locus for pathological myopia at 11q24.1. (PMID: 19779542) Nakanishi H. … Matsuda F. (PLoS Genet. 2009) 3 64

Products for MIR100HG Gene

Sources for MIR100HG Gene

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