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Aliases for MIR1-1HG Gene

Aliases for MIR1-1HG Gene

  • MIR1-1 Host Gene 2 3 5
  • MIR1-1 Host Gene Protein 3 4
  • C20orf166 3 4
  • Chromosome 20 Open Reading Frame 166 2
  • Uncharacterized Protein C20orf166 3
  • Uncharacterized Protein MIR1-1HG 3
  • MIR133A2 Host Gene 2
  • MIR133A2 Host 3
  • MIR133A2HG 3

External Ids for MIR1-1HG Gene

Previous HGNC Symbols for MIR1-1HG Gene

  • C20orf166

Previous GeneCards Identifiers for MIR1-1HG Gene

  • GC20P062651
  • GC20P062707
  • GC20P062720
  • GC20P062776
  • GC20P062784
  • GC20P062793
  • GC20P062807

Summaries for MIR1-1HG Gene

GeneCards Summary for MIR1-1HG Gene

MIR1-1HG (MIR1-1 Host Gene) is a Protein Coding gene.

Additional gene information for MIR1-1HG Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR1-1HG Gene

Genomics for MIR1-1HG Gene

GeneHancer (GH) Regulatory Elements for MIR1-1HG Gene

Promoters and enhancers for MIR1-1HG Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20I062641 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 11 +94.9 94929 8 HDGF PKNOX1 CLOCK MLX ZFP64 ARID4B NEUROD1 SIN3A FEZF1 DMAP1 SLCO4A1 MRGBP TAF4 GMEB2 SLCO4A1-AS1 OGFR OGFR-AS1 MIR1-1HG MIR1-1HG-AS1 MIR1-1
GH20I062649 Promoter/Enhancer 2.1 FANTOM5 Ensembl ENCODE dbSUPER 10.5 +101.6 101639 4.7 HDGF PKNOX1 CLOCK FOXA2 SMAD1 MLX ARID4B NEUROD1 SIN3A FEZF1 ENSG00000276317 ENSG00000277496 OGFR YTHDF1 OGFR-AS1 MTG2 MIR1-1 MIR1-1HG MIR1-1HG-AS1 DIDO1
GH20I062589 Enhancer 1.1 FANTOM5 ENCODE dbSUPER 19.6 +39.7 39725 1.8 ELK4 MXI1 MAZ SMARCC1 MAX PAX8 MNT SMARCB1 RAD21 GABPA MIR1-1HG MIR1-1HG-AS1 MIR133A2 ENSG00000229882 ENSG00000232121 MIR1-1 ENSG00000264490 WI2-87327B8.2
GH20I062549 Enhancer 1.1 ENCODE dbSUPER 19.5 +8.3 8257 19.2 SIN3A SLC30A9 GLIS2 FOS ATF7 ZNF263 RXRA SP5 ZHX2 KAT8 MIR1-1HG LAMA5 MIR1-1HG-AS1 ENSG00000232121 ENSG00000229882 RPS21 ENSG00000223669 ENSG00000264490 GC20P062818 MIR1-1
GH20I062425 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE dbSUPER 11 -121.4 -121442 6.4 HDGF CLOCK FOXA2 NEUROD1 SIN3A ZBTB7B ZNF207 SP5 REST ZNF592 LOC105372710 RBBP8NL CABLES2 DIDO1 ARFGAP1 RPS21 YTHDF1 TAF4 LAMA5 MIR1-1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MIR1-1HG on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR1-1HG Gene

Genomic Locations for MIR1-1HG Gene
chr20:62,550,453-62,570,764
(GRCh38/hg38)
Size:
20,312 bases
Orientation:
Plus strand
chr20:61,147,660-61,167,971
(GRCh37/hg19)

Genomic View for MIR1-1HG Gene

Genes around MIR1-1HG on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR1-1HG Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR1-1HG Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR1-1HG Gene

Proteins for MIR1-1HG Gene

  • Protein details for MIR1-1HG Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9H1L0-MI1HG_HUMAN
    Recommended name:
    Uncharacterized protein MIR1-1HG
    Protein Accession:
    Q9H1L0
    Secondary Accessions:
    • Q2TB30

    Protein attributes for MIR1-1HG Gene

    Size:
    117 amino acids
    Molecular mass:
    12410 Da
    Quaternary structure:
    No Data Available

neXtProt entry for MIR1-1HG Gene

Post-translational modifications for MIR1-1HG Gene

No Post-translational modifications

Other Protein References for MIR1-1HG Gene

REFSEQ proteins:

No data available for DME Specific Peptides for MIR1-1HG Gene

Domains & Families for MIR1-1HG Gene

Protein Domains for MIR1-1HG Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR1-1HG: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR1-1HG Gene

Function for MIR1-1HG Gene

Phenotypes for MIR1-1HG Gene

genes like me logo Genes that share phenotypes with MIR1-1HG: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR1-1HG Gene

Localization for MIR1-1HG Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for MIR1-1HG gene
Compartment Confidence
extracellular 3
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR1-1HG Gene

Pathways & Interactions for MIR1-1HG Gene

SuperPathways for MIR1-1HG Gene

No Data Available

Interacting Proteins for MIR1-1HG Gene

Gene Ontology (GO) - Biological Process for MIR1-1HG Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR1-1HG Gene

Drugs & Compounds for MIR1-1HG Gene

No Compound Related Data Available

Transcripts for MIR1-1HG Gene

mRNA/cDNA for MIR1-1HG Gene

(2) REFSEQ mRNAs :
(5) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR1-1HG Gene

No ASD Table

Relevant External Links for MIR1-1HG Gene

GeneLoc Exon Structure for
MIR1-1HG
ECgene alternative splicing isoforms for
MIR1-1HG

Expression for MIR1-1HG Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR1-1HG Gene

Evidence on tissue expression from TISSUES for MIR1-1HG Gene

  • Muscle(2.5)
genes like me logo Genes that share expression patterns with MIR1-1HG: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR1-1HG Gene

Orthologs for MIR1-1HG Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for MIR1-1HG Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C20H20orf166 33
  • 98.29 (n)
C20orf166 34
  • 97 (a)
OneToOne
Species where no ortholog for MIR1-1HG was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for MIR1-1HG Gene

ENSEMBL:
Gene Tree for MIR1-1HG (if available)
TreeFam:
Gene Tree for MIR1-1HG (if available)

Paralogs for MIR1-1HG Gene

No data available for Paralogs for MIR1-1HG Gene

Variants for MIR1-1HG Gene

Sequence variations from dbSNP and Humsavar for MIR1-1HG Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1000363415 -- 62,550,862(+) C/T 5_prime_UTR_variant, intron_variant
rs1000437018 -- 62,550,735(+) T/C 5_prime_UTR_variant, intron_variant
rs1000635568 -- 62,551,516(+) G/A/C intron_variant
rs1000690030 -- 62,554,625(+) G/A intron_variant
rs1000705956 -- 62,551,977(+) A/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for MIR1-1HG Gene

Variant ID Type Subtype PubMed ID
dgv4343n100 CNV gain 25217958
dgv4344n100 CNV gain 25217958
esv2422398 CNV duplication 17116639
nsv1072554 CNV deletion 25765185
nsv459065 CNV gain 19166990
nsv459068 CNV gain 19166990
nsv470556 CNV loss 18288195
nsv473023 CNV novel sequence insertion 20440878
nsv474672 CNV novel sequence insertion 20440878
nsv476223 CNV novel sequence insertion 20440878
nsv479862 CNV novel sequence insertion 20440878
nsv480043 CNV novel sequence insertion 20440878
nsv586496 CNV gain 21841781
nsv586501 CNV gain 21841781
nsv953302 CNV deletion 24416366

Variation tolerance for MIR1-1HG Gene

Residual Variation Intolerance Score: 73.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.20; 24.06% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for MIR1-1HG Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR1-1HG

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for MIR1-1HG Gene

Disorders for MIR1-1HG Gene

Additional Disease Information for MIR1-1HG

No disorders were found for MIR1-1HG Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR1-1HG Gene

Publications for MIR1-1HG Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
  3. The DNA sequence and comparative analysis of human chromosome 20. (PMID: 11780052) Deloukas P … Rogers J (Nature 2001) 3 4 58
  4. Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array. (PMID: 23535732) Eeles RA … Easton DF (Nature genetics 2013) 3 58
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for MIR1-1HG Gene

Sources for MIR1-1HG Gene

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