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Aliases for MIR1-1HG Gene

Aliases for MIR1-1HG Gene

  • MIR1-1 Host Gene 2 3
  • MIR1-1 Host Gene Protein 3 4
  • C20orf166 3 4
  • Chromosome 20 Open Reading Frame 166 2
  • Uncharacterized Protein C20orf166 3
  • Uncharacterized Protein MIR1-1HG 3
  • MIR133A2 Host Gene 2
  • MIR133A2 Host 3
  • MIR133A2HG 3
  • DJ353C17.1 3

External Ids for MIR1-1HG Gene

Previous HGNC Symbols for MIR1-1HG Gene

  • C20orf166

Summaries for MIR1-1HG Gene

GeneCards Summary for MIR1-1HG Gene

MIR1-1HG (MIR1-1 Host Gene) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR1-1HG Gene

Genomics for MIR1-1HG Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for MIR1-1HG Gene

Start:
62,550,453 bp from pter
End:
62,570,764 bp from pter
Size:
20,312 bases
Orientation:
Plus strand

Genomic View for MIR1-1HG Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for MIR1-1HG Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR1-1HG Gene

No data available for Regulatory Elements for MIR1-1HG Gene

Proteins for MIR1-1HG Gene

  • Protein details for MIR1-1HG Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9H1L0-MI1HG_HUMAN
    Recommended name:
    Uncharacterized protein MIR1-1HG
    Protein Accession:
    Q9H1L0
    Secondary Accessions:
    • Q2TB30

    Protein attributes for MIR1-1HG Gene

    Size:
    117 amino acids
    Molecular mass:
    12410 Da
    Quaternary structure:
    No Data Available

neXtProt entry for MIR1-1HG Gene

Proteomics data for MIR1-1HG Gene at MOPED

Post-translational modifications for MIR1-1HG Gene

No Post-translational modifications

Other Protein References for MIR1-1HG Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for MIR1-1HG Gene

Domains for MIR1-1HG Gene

Protein Domains for MIR1-1HG Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR1-1HG: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR1-1HG Gene

Function for MIR1-1HG Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for MIR1-1HG Gene

Localization for MIR1-1HG Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR1-1HG Gene

Pathways for MIR1-1HG Gene

SuperPathways for MIR1-1HG Gene

No Data Available

Interacting Proteins for MIR1-1HG Gene

Gene Ontology (GO) - Biological Process for MIR1-1HG Gene

None

No data available for Pathways by source for MIR1-1HG Gene

Transcripts for MIR1-1HG Gene

mRNA/cDNA for MIR1-1HG Gene

(5) Selected AceView cDNA sequences:
(2) REFSEQ mRNAs :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for MIR1-1HG

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for MIR1-1HG
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR1-1HG Gene

No ASD Table

Relevant External Links for MIR1-1HG Gene

GeneLoc Exon Structure for
MIR1-1HG
ECgene alternative splicing isoforms for
MIR1-1HG

Expression for MIR1-1HG Gene

mRNA expression in normal human tissues for MIR1-1HG Gene

genes like me logo Genes that share expressions with MIR1-1HG: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for MIR1-1HG Gene

Orthologs for MIR1-1HG Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for MIR1-1HG Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C20H20orf166 35
  • 98.29 (n)
  • 97.44 (a)
C20orf166 36
  • 97 (a)
OneToOne
Species with no ortholog for MIR1-1HG:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for MIR1-1HG Gene

ENSEMBL:
Gene Tree for MIR1-1HG (if available)
TreeFam:
Gene Tree for MIR1-1HG (if available)

Paralogs for MIR1-1HG Gene

No data available for Paralogs for MIR1-1HG Gene

Variants for MIR1-1HG Gene

Sequence variations from dbSNP and Humsavar for MIR1-1HG Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type MAF
rs4072470 -- 62,566,037(+) GCAGA(A/G)GGGCA intron-variant
rs4072471 -- 62,566,157(+) ATTCC(C/T)AGGGT intron-variant
rs4072472 -- 62,566,229(+) CCAGA(C/T)AGTGG intron-variant
rs4072473 -- 62,565,984(+) GAGGC(A/G)AGGGT intron-variant
rs4072474 -- 62,566,815(-) CAACA(A/G)CAGAC intron-variant

Relevant External Links for MIR1-1HG Gene

HapMap Linkage Disequilibrium report
MIR1-1HG

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for MIR1-1HG Gene

Disorders for MIR1-1HG Gene

No disorders were found for MIR1-1HG Gene.

No data available for UniProtKB/Swiss-Prot for MIR1-1HG Gene

Publications for MIR1-1HG Gene

  1. The DNA sequence and comparative analysis of human chromosome 20. (PMID: 11780052) Deloukas P. … Rogers J. (Nature 2001) 3 4
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array. (PMID: 23535732) Eeles R.A. … Easton D.F. (Nat. Genet. 2013) 3
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for MIR1-1HG Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate MIR1-1HG
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for MIR1-1HG
    • Block miRNA regulation of MIR1-1HG using miScript Target Protectors

    Sources for MIR1-1HG Gene

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