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Aliases for MIR1-1HG Gene

Aliases for MIR1-1HG Gene

  • MIR1-1 Host Gene 2 3 5
  • MIR1-1 Host Gene Protein 3 4
  • C20orf166 3 4
  • Chromosome 20 Open Reading Frame 166 2
  • Uncharacterized Protein C20orf166 3
  • Uncharacterized Protein MIR1-1HG 3
  • MIR133A2 Host Gene 2
  • MIR133A2 Host 3
  • MIR133A2HG 3
  • DJ353C17.1 3

External Ids for MIR1-1HG Gene

Previous HGNC Symbols for MIR1-1HG Gene

  • C20orf166

Previous GeneCards Identifiers for MIR1-1HG Gene

  • GC20P062651
  • GC20P062707
  • GC20P062720
  • GC20P062776

Summaries for MIR1-1HG Gene

GeneCards Summary for MIR1-1HG Gene

MIR1-1HG (MIR1-1 Host Gene) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR1-1HG Gene

Genomics for MIR1-1HG Gene

Regulatory Elements for MIR1-1HG Gene


Enhancers around MIR1-1HG on UCSC Golden Path with GeneCards custom track

Promoters for MIR1-1HG Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001839126 247 601 CTCF ZNF366 GLIS1 ZBTB8A ZIC2 ZZZ3 ZBTB26 EZH2
ENSR00001021581 1047 601 GLIS2 PATZ1 GLIS1 ZBTB8A ZIC2 ZBTB20 EZH2

Genomic Location for MIR1-1HG Gene

Chromosome:
20
Start:
62,550,453 bp from pter
End:
62,570,764 bp from pter
Size:
20,312 bases
Orientation:
Plus strand

Genomic View for MIR1-1HG Gene

Genes around MIR1-1HG on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR1-1HG Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR1-1HG Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR1-1HG Gene

Proteins for MIR1-1HG Gene

  • Protein details for MIR1-1HG Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9H1L0-MI1HG_HUMAN
    Recommended name:
    Uncharacterized protein MIR1-1HG
    Protein Accession:
    Q9H1L0
    Secondary Accessions:
    • Q2TB30

    Protein attributes for MIR1-1HG Gene

    Size:
    117 amino acids
    Molecular mass:
    12410 Da
    Quaternary structure:
    No Data Available

neXtProt entry for MIR1-1HG Gene

Post-translational modifications for MIR1-1HG Gene

No Post-translational modifications

Other Protein References for MIR1-1HG Gene

REFSEQ proteins:

No data available for DME Specific Peptides for MIR1-1HG Gene

Domains & Families for MIR1-1HG Gene

Protein Domains for MIR1-1HG Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR1-1HG: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR1-1HG Gene

Function for MIR1-1HG Gene

Phenotypes for MIR1-1HG Gene

genes like me logo Genes that share phenotypes with MIR1-1HG: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR1-1HG Gene

Localization for MIR1-1HG Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for MIR1-1HG gene
Compartment Confidence
extracellular 3
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for MIR1-1HG Gene

Pathways & Interactions for MIR1-1HG Gene

SuperPathways for MIR1-1HG Gene

No Data Available

Interacting Proteins for MIR1-1HG Gene

Gene Ontology (GO) - Biological Process for MIR1-1HG Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR1-1HG Gene

Transcripts for MIR1-1HG Gene

mRNA/cDNA for MIR1-1HG Gene

(2) REFSEQ mRNAs :
(5) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR1-1HG Gene

No ASD Table

Relevant External Links for MIR1-1HG Gene

GeneLoc Exon Structure for
MIR1-1HG
ECgene alternative splicing isoforms for
MIR1-1HG

Expression for MIR1-1HG Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MIR1-1HG Gene

genes like me logo Genes that share expression patterns with MIR1-1HG: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MIR1-1HG Gene

Orthologs for MIR1-1HG Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for MIR1-1HG Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C20H20orf166 34
  • 98.29 (n)
C20orf166 35
  • 97 (a)
OneToOne
Species where no ortholog for MIR1-1HG was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for MIR1-1HG Gene

ENSEMBL:
Gene Tree for MIR1-1HG (if available)
TreeFam:
Gene Tree for MIR1-1HG (if available)

Paralogs for MIR1-1HG Gene

No data available for Paralogs for MIR1-1HG Gene

Variants for MIR1-1HG Gene

Sequence variations from dbSNP and Humsavar for MIR1-1HG Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs10211728 -- 62,569,193(-) ACTAC(A/G)TTACT intron-variant
rs10427430 -- 62,567,856(-) CCACC(A/G)CTGTG intron-variant
rs10427468 -- 62,567,455(-) TCGTG(C/T)TTGGC intron-variant
rs111347085 -- 62,559,323(+) ACTGT(C/T)GCTGG intron-variant
rs111501979 -- 62,553,626(+) GCAGC(C/G)TTCAC upstream-variant-2KB, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for MIR1-1HG Gene

Variant ID Type Subtype PubMed ID
nsv953302 CNV deletion 24416366
nsv586501 CNV gain 21841781
nsv586496 CNV gain 21841781
nsv480043 CNV novel sequence insertion 20440878
nsv479862 CNV novel sequence insertion 20440878
nsv476223 CNV novel sequence insertion 20440878
nsv474672 CNV novel sequence insertion 20440878
nsv473023 CNV novel sequence insertion 20440878
nsv470556 CNV loss 18288195
nsv459068 CNV gain 19166990
nsv459065 CNV gain 19166990
nsv1072554 CNV deletion 25765185
esv2422398 CNV duplication 17116639
dgv4344n100 CNV gain 25217958
dgv4343n100 CNV gain 25217958

Variation tolerance for MIR1-1HG Gene

Residual Variation Intolerance Score: 73.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.20; 24.06% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for MIR1-1HG Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR1-1HG

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for MIR1-1HG Gene

Disorders for MIR1-1HG Gene

Relevant External Links for MIR1-1HG

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR1-1HG

No disorders were found for MIR1-1HG Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR1-1HG Gene

Publications for MIR1-1HG Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  3. The DNA sequence and comparative analysis of human chromosome 20. (PMID: 11780052) Deloukas P. … Rogers J. (Nature 2001) 3 4 64
  4. Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array. (PMID: 23535732) Eeles R.A. … Easton D.F. (Nat. Genet. 2013) 3 64
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for MIR1-1HG Gene

Sources for MIR1-1HG Gene

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