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Aliases for MIMT1 Gene

Subcategory (RNA class) for MIMT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for MIMT1 Gene

  • MER1 Repeat Containing Imprinted Transcript 1 (Non-Protein Coding) 2 3 5
  • Long Intergenic Non-Protein Coding RNA 67 2 3
  • Non-Protein Coding RNA 67 2
  • NCRNA00067 3
  • LINC00067 3
  • MIM1 3

External Ids for MIMT1 Gene

Previous GeneCards Identifiers for MIMT1 Gene

  • GC19U900733
  • GC19P057352
  • GC19P053661

Summaries for MIMT1 Gene

GeneCards Summary for MIMT1 Gene

MIMT1 (MER1 Repeat Containing Imprinted Transcript 1 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for MIMT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIMT1 Gene

Genomics for MIMT1 Gene

GeneHancer (GH) Regulatory Elements for MIMT1 Gene

Promoters and enhancers for MIMT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19I056836 Promoter/Enhancer 2.1 EPDnew FANTOM5 Ensembl ENCODE 550.8 -1.1 -1072 6.4 PKNOX1 ZFP64 ARID4B THRB ZNF48 RAD21 YY1 ATF7 CREM THAP11 PEG3 ZIM2 MIMT1 ZNF471 SMIM17 ZNF667 ZNF835 ZNF470 ZNF583 ZFP28
GH19I056594 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 10.5 -245.5 -245462 1.4 HDGF PKNOX1 ZNF133 ARID4B SIN3A FEZF1 YBX1 GLI4 ZNF48 YY1 ZNF71 U2AF2 ZNF17 ZNF543 ZNF549 ZNF264 ZNF773 ENSG00000269696 ZNF550 ZFP28
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MIMT1 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the MIMT1 gene promoter:

Genomic Locations for MIMT1 Gene

Genomic Locations for MIMT1 Gene
chr19:56,840,902-56,848,556
(GRCh38/hg38)
Size:
7,655 bases
Orientation:
Plus strand
chr19:57,352,270-57,359,924
(GRCh37/hg19)

Genomic View for MIMT1 Gene

Genes around MIMT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIMT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIMT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIMT1 Gene

Proteins for MIMT1 Gene

Post-translational modifications for MIMT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIMT1 Gene

Domains & Families for MIMT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIMT1 Gene

Function for MIMT1 Gene

Phenotypes From GWAS Catalog for MIMT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIMT1 Gene

Localization for MIMT1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for MIMT1 gene
Compartment Confidence
mitochondrion 1
endosome 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIMT1 Gene

Pathways & Interactions for MIMT1 Gene

SuperPathways for MIMT1 Gene

No Data Available

Interacting Proteins for MIMT1 Gene

Gene Ontology (GO) - Biological Process for MIMT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIMT1 Gene

Drugs & Compounds for MIMT1 Gene

No Compound Related Data Available

Transcripts for MIMT1 Gene

mRNA/cDNA for MIMT1 Gene

(4) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MIMT1 Gene

MER1 repeat containing imprinted transcript 1 (non-protein coding):
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIMT1 Gene

No ASD Table

Relevant External Links for MIMT1 Gene

GeneLoc Exon Structure for
MIMT1
ECgene alternative splicing isoforms for
MIMT1

Expression for MIMT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIMT1 Gene

mRNA differential expression in normal tissues according to GTEx for MIMT1 Gene

This gene is overexpressed in Testis (x9.0) and Brain - Nucleus accumbens (basal ganglia) (x4.4).

NURSA nuclear receptor signaling pathways regulating expression of MIMT1 Gene:

MIMT1

SOURCE GeneReport for Unigene cluster for MIMT1 Gene:

Hs.467337
genes like me logo Genes that share expression patterns with MIMT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIMT1 Gene

Orthologs for MIMT1 Gene

Evolution for MIMT1 Gene

ENSEMBL:
Gene Tree for MIMT1 (if available)
TreeFam:
Gene Tree for MIMT1 (if available)

No data available for Orthologs for MIMT1 Gene

Paralogs for MIMT1 Gene

No data available for Paralogs for MIMT1 Gene

Variants for MIMT1 Gene

Sequence variations from dbSNP and Humsavar for MIMT1 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000088225 -- 56,846,873(+) G/A intron_variant
rs1000479952 -- 56,840,975(+) CCCCC/CCCCCC non_coding_transcript_variant
rs1001537439 -- 56,846,581(+) G/C intron_variant
rs1001773023 -- 56,844,489(+) C/T intron_variant
rs1001847313 -- 56,838,993(+) G/A/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MIMT1 Gene

Variant ID Type Subtype PubMed ID
nsv833884 CNV loss 17160897

Additional Variant Information for MIMT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIMT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIMT1 Gene

Disorders for MIMT1 Gene

Additional Disease Information for MIMT1

No disorders were found for MIMT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIMT1 Gene

Publications for MIMT1 Gene

  1. Genomic organization and imprinting of the Peg3 domain in bovine. (PMID: 17509818) Kim J … Stubbs L (Genomics 2007) 2 3 58
  2. ncRNAimprint: a comprehensive database of mammalian imprinted noncoding RNAs. (PMID: 20801769) Zhang Y … Qu LH (RNA (New York, N.Y.) 2010) 3 58
  3. A genome-wide association study for blood lipid phenotypes in the Framingham Heart Study. (PMID: 17903299) Kathiresan S … Cupples LA (BMC medical genetics 2007) 44 58

Products for MIMT1 Gene

Sources for MIMT1 Gene

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