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Aliases for MIMT1 Gene

Subcategory (RNA class) for MIMT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for MIMT1 Gene

  • MER1 Repeat Containing Imprinted Transcript 1 (Non-Protein Coding) 2 3 5
  • Long Intergenic Non-Protein Coding RNA 67 2 3
  • Non-Protein Coding RNA 67 2
  • NCRNA00067 3
  • LINC00067 3
  • MIM1 3

External Ids for MIMT1 Gene

Previous GeneCards Identifiers for MIMT1 Gene

  • GC19U900733
  • GC19P057352
  • GC19P053661

Summaries for MIMT1 Gene

GeneCards Summary for MIMT1 Gene

MIMT1 (MER1 Repeat Containing Imprinted Transcript 1 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIMT1 Gene

Genomics for MIMT1 Gene

Regulatory Elements for MIMT1 Gene

Enhancers for MIMT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19F056638 0.2 ENCODE 10.9 -202.8 -202755 0.2 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF48 SLC30A9 ZNF143 ZNF263 SP5 ENSG00000269696 ZNF582-AS1 MIMT1 ZNF667 ZNF470 ZNF667-AS1 ZFP28 ZIM2-AS1 LOC105372476 SMIM17
GH19F056252 0.8 Ensembl ENCODE 10.8 -588.0 -587972 0.3 ATF1 CBX3 NFRKB RAD21 CHAMP1 YY1 CBX5 ZNF143 KLF13 ZHX1 U2AF2 ZNF580 NAT14 ENSG00000269696 ZNF582-AS1 FIZ1 ZNF667 MIMT1 KMT5C ZNF470
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around MIMT1 on UCSC Golden Path with GeneCards custom track

Promoters for MIMT1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000349150 -1101 5199 PKNOX1 ATF1 CREB3L1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 ZNF48 YY1

Genomic Location for MIMT1 Gene

Chromosome:
19
Start:
56,840,902 bp from pter
End:
56,848,556 bp from pter
Size:
7,655 bases
Orientation:
Plus strand

Genomic View for MIMT1 Gene

Genes around MIMT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIMT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIMT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIMT1 Gene

Proteins for MIMT1 Gene

Post-translational modifications for MIMT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIMT1 Gene

Domains & Families for MIMT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIMT1 Gene

Function for MIMT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIMT1 Gene

Localization for MIMT1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for MIMT1 Gene COMPARTMENTS Subcellular localization image for MIMT1 gene
Compartment Confidence
endosome 1
mitochondrion 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for MIMT1 Gene

Pathways & Interactions for MIMT1 Gene

SuperPathways for MIMT1 Gene

No Data Available

Interacting Proteins for MIMT1 Gene

Gene Ontology (GO) - Biological Process for MIMT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIMT1 Gene

Transcripts for MIMT1 Gene

mRNA/cDNA for MIMT1 Gene

(4) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MIMT1 Gene

MER1 repeat containing imprinted transcript 1 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MIMT1 Gene

No ASD Table

Relevant External Links for MIMT1 Gene

GeneLoc Exon Structure for
MIMT1
ECgene alternative splicing isoforms for
MIMT1

Expression for MIMT1 Gene

mRNA expression in normal human tissues for MIMT1 Gene

mRNA differential expression in normal tissues according to GTEx for MIMT1 Gene

This gene is overexpressed in Testis (x9.0) and Brain - Nucleus accumbens (basal ganglia) (x4.4).

NURSA nuclear receptor signaling pathways regulating expression of MIMT1 Gene:

MIMT1

SOURCE GeneReport for Unigene cluster for MIMT1 Gene:

Hs.467337
genes like me logo Genes that share expression patterns with MIMT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MIMT1 Gene

Orthologs for MIMT1 Gene

Evolution for MIMT1 Gene

ENSEMBL:
Gene Tree for MIMT1 (if available)
TreeFam:
Gene Tree for MIMT1 (if available)

No data available for Orthologs for MIMT1 Gene

Paralogs for MIMT1 Gene

No data available for Paralogs for MIMT1 Gene

Variants for MIMT1 Gene

Sequence variations from dbSNP and Humsavar for MIMT1 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs10410188 -- 56,846,653(+) TATTT(C/T)TTTAA intron-variant
rs111368294 -- 56,839,506(+) CAGGG(C/G)AGCAC intron-variant, upstream-variant-2KB
rs111927012 -- 56,845,982(+) TCCAT(C/T)AGATT intron-variant
rs112089598 -- 56,840,817(+) CTCTC(C/T)GGGCC upstream-variant-2KB
rs112234833 -- 56,839,577(+) TGGAT(A/C)GTTAC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIMT1 Gene

Variant ID Type Subtype PubMed ID
nsv833884 CNV loss 17160897

Relevant External Links for MIMT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIMT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIMT1 Gene

Disorders for MIMT1 Gene

Relevant External Links for MIMT1

Genetic Association Database (GAD)
MIMT1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIMT1

No disorders were found for MIMT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIMT1 Gene

Publications for MIMT1 Gene

  1. Genomic organization and imprinting of the Peg3 domain in bovine. (PMID: 17509818) Kim J. … Stubbs L. (Genomics 2007) 2 3 64
  2. ncRNAimprint: a comprehensive database of mammalian imprinted noncoding RNAs. (PMID: 20801769) Zhang Y. … Qu L.H. (RNA 2010) 3 64
  3. A genome-wide association study for blood lipid phenotypes in the Framingham Heart Study. (PMID: 17903299) Kathiresan S. … Cupples L.A. (BMC Med. Genet. 2007) 46 64

Products for MIMT1 Gene

Sources for MIMT1 Gene

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