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Aliases for MIF4GD Gene

Aliases for MIF4GD Gene

  • MIF4G Domain Containing 2 3
  • SLIP1 3 4 6
  • SLBP-Interacting Protein 1 3 4
  • SLBP (Stem Loop Binding Protein)-Interacting Protein 1 3
  • MIF4G Domain-Containing Protein 3
  • HSLIP1 4
  • AD023 3
  • MIFD 3

External Ids for MIF4GD Gene

Previous Symbols for MIF4GD Gene

  • MIFD

Summaries for MIF4GD Gene

Entrez Gene Summary for MIF4GD Gene

  • This gene encodes a protein which interacts with the N-terminus of the stem-loop binding protein (SLBP) and the 3' end of histone mRNA. This interaction facilitates the activation of histone mRNA translation. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Jun 2011]

GeneCards Summary for MIF4GD Gene

MIF4GD (MIF4G Domain Containing) is a Protein Coding gene. GO annotations related to this gene include RNA binding and protein C-terminus binding. An important paralog of this gene is CTIF.

UniProtKB/Swiss-Prot for MIF4GD Gene

  • Functions in replication-dependent translation of histone mRNAs which differ from other eukaryotic mRNAs in that they do not end with a poly-A tail but a stem-loop. May participate in circularizing those mRNAs specifically enhancing their translation.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIF4GD Gene

Genomics for MIF4GD Gene

Genomic Location for MIF4GD Gene

Start:
75,266,228 bp from pter
End:
75,271,292 bp from pter
Size:
5,065 bases
Orientation:
Minus strand

Genomic View for MIF4GD Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for MIF4GD Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIF4GD Gene

Regulatory Elements for MIF4GD Gene

Proteins for MIF4GD Gene

  • Protein details for MIF4GD Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A9UHW6-MI4GD_HUMAN
    Recommended name:
    MIF4G domain-containing protein
    Protein Accession:
    A9UHW6
    Secondary Accessions:
    • B4DUM7
    • Q8N4Q5
    • Q9HBL5

    Protein attributes for MIF4GD Gene

    Size:
    222 amino acids
    Molecular mass:
    25423 Da
    Quaternary structure:
    • Interacts with EIF4G1, EIF4G2 and SLBP; probably tethered by SLBP to the 3-end of mRNAs ending with the histone stem-loop, it also interacts with EIF4G1 which is bound to their 5-end.
    Miscellaneous:
    • Depletion of MIF4GD results in cell death and reduced histone mRNA translation
    SequenceCaution:
    • Sequence=AAG09724.1; Type=Frameshift; Positions=Several; Evidence={ECO:0000305};

    Alternative splice isoforms for MIF4GD Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for MIF4GD Gene

Proteomics data for MIF4GD Gene at MOPED

Post-translational modifications for MIF4GD Gene

  • Modification sites at PhosphoSitePlus
  • Ubiquitination at Lys53 and Lys68

No data available for DME Specific Peptides for MIF4GD Gene

Domains for MIF4GD Gene

Protein Domains for MIF4GD Gene

UniProtKB/Swiss-Prot:

MI4GD_HUMAN
Domain:
  • Contains 1 MIF4G domain.:
    • A9UHW6
Family:
  • Belongs to the MIF4GD family.:
    • A9UHW6
genes like me logo Genes that share domains with MIF4GD: view

No data available for Gene Families for MIF4GD Gene

Function for MIF4GD Gene

Molecular function for MIF4GD Gene

UniProtKB/Swiss-Prot Function: Functions in replication-dependent translation of histone mRNAs which differ from other eukaryotic mRNAs in that they do not end with a poly-A tail but a stem-loop. May participate in circularizing those mRNAs specifically enhancing their translation.

Gene Ontology (GO) - Molecular Function for MIF4GD Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003723 RNA binding IEA --
GO:0005488 binding --
GO:0005515 protein binding IPI 16189514
GO:0008022 protein C-terminus binding IPI 17577209
genes like me logo Genes that share ontologies with MIF4GD: view

miRNA for MIF4GD Gene

miRTarBase miRNAs that target MIF4GD

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for MIF4GD Gene

Localization for MIF4GD Gene

Subcellular locations from UniProtKB/Swiss-Prot for MIF4GD Gene

Cytoplasm. Nucleus.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for MIF4GD Gene COMPARTMENTS Subcellular localization image for MIF4GD gene
Compartment Confidence
nucleus 5
cytosol 3
extracellular 2
peroxisome 1
plasma membrane 1

Gene Ontology (GO) - Cellular Components for MIF4GD Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IDA --
GO:0005737 cytoplasm IDA --
genes like me logo Genes that share ontologies with MIF4GD: view

Pathways for MIF4GD Gene

SuperPathways for MIF4GD Gene

No Data Available

Gene Ontology (GO) - Biological Process for MIF4GD Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006417 regulation of translation IEA --
genes like me logo Genes that share ontologies with MIF4GD: view

No data available for Pathways by source for MIF4GD Gene

Transcripts for MIF4GD Gene

Unigene Clusters for MIF4GD Gene

MIF4G domain containing:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MIF4GD Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3a · 3b · 3c · 3d · 3e ^ 4a · 4b ^ 5a · 5b ^ 6a · 6b ^ 7a · 7b ^ 8a · 8b · 8c · 8d · 8e
SP1: - - - -
SP2: - - -
SP3: - - - - - -
SP4: - - -
SP5: - - - - - - - -
SP6: - - - -
SP7: - - -
SP8: - - - -
SP9: - - - -
SP10:
SP11: - -

Relevant External Links for MIF4GD Gene

GeneLoc Exon Structure for
MIF4GD
ECgene alternative splicing isoforms for
MIF4GD

Expression for MIF4GD Gene

mRNA expression in normal human tissues for MIF4GD Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for MIF4GD Gene

SOURCE GeneReport for Unigene cluster for MIF4GD Gene Hs.325631

genes like me logo Genes that share expressions with MIF4GD: view

Orthologs for MIF4GD Gene

This gene was present in the common ancestor of chordates.

Orthologs for MIF4GD Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia MIF4GD 36
  • 99.87 (n)
  • 100 (a)
MIF4GD 37
  • 89 (a)
OneToOne
cow
(Bos Taurus)
Mammalia MIF4GD 36
  • 94.44 (n)
  • 97.75 (a)
MIF4GD 37
  • 97 (a)
OneToOne
dog
(Canis familiaris)
Mammalia -- 37
  • 61 (a)
OneToMany
-- 37
  • 98 (a)
OneToMany
MIF4GD 36
  • 92.94 (n)
  • 98.2 (a)
mouse
(Mus musculus)
Mammalia Mif4gd 36
  • 91.29 (n)
  • 93.24 (a)
Mif4gd 16
Mif4gd 37
  • 93 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia MIF4GD 37
  • 91 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia MIF4GD 37
  • 77 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Mif4gd 36
  • 91.29 (n)
  • 94.14 (a)
chicken
(Gallus gallus)
Aves MIF4GD 36
  • 78.68 (n)
  • 83.78 (a)
MIF4GD 37
  • 83 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia MIF4GD 37
  • 68 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia MGC53513 36
tropical clawed frog
(Silurana tropicalis)
Amphibia mif4gd 36
  • 72.96 (n)
  • 76.5 (a)
zebrafish
(Danio rerio)
Actinopterygii mif4gda 37
  • 66 (a)
OneToMany
mif4gdb 36
  • 72.07 (n)
  • 73.87 (a)
mif4gdb 37
  • 73 (a)
OneToMany
zgc64152 36
Species with no ortholog for MIF4GD:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for MIF4GD Gene

ENSEMBL:
Gene Tree for MIF4GD (if available)
TreeFam:
Gene Tree for MIF4GD (if available)

Paralogs for MIF4GD Gene

Paralogs for MIF4GD Gene

genes like me logo Genes that share paralogs with MIF4GD: view

Variants for MIF4GD Gene

Sequence variations from dbSNP and Humsavar for MIF4GD Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
rs4789162 -- 75,267,201(+) CTTCA(A/T)CCCAC intron-variant
rs4789163 -- 75,267,202(+) TTCAT(A/C)CCACT intron-variant
rs11267775 -- 75,267,185(+) GTCTC(-/CAAACCACTTCTT)CAAAC intron-variant
rs12103470 -- 75,268,717(+) AGAGg(A/G)cctgg intron-variant
rs55815500 -- 75,267,200(+) CTTCA(-/AACCACTTCTTCA)TCCCA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for MIF4GD Gene

Variant ID Type Subtype PubMed ID
nsv908758 CNV Loss 21882294
nsv908760 CNV Loss 21882294
nsv510727 CNV Loss 20534489
nsv908761 CNV Loss 21882294

Relevant External Links for MIF4GD Gene

HapMap Linkage Disequilibrium report
MIF4GD

Disorders for MIF4GD Gene

No disorders were found for MIF4GD Gene.

No data available for UniProtKB/Swiss-Prot for MIF4GD Gene

Publications for MIF4GD Gene

  1. SLIP1, a factor required for activation of histone mRNA translation by the stem-loop binding protein. (PMID: 18025107) Cakmakci N.G. … Marzluff W.F. (Mol. Cell. Biol. 2008) 3 4
  2. Novel interactors and a role for supervillin in early cytokinesis. (PMID: 20309963) Smith T.C. … Luna E.J. (Cytoskeleton (Hoboken) 2010) 3
  3. Toward an understanding of the protein interaction network of the human liver. (PMID: 21988832) Wang J. … Yang X. (Mol. Syst. Biol. 2011) 3
  4. INT6 interacts with MIF4GD/SLIP1 and is necessary for efficient histone mRNA translation. (PMID: 22532700) Neusiedler J. … Jalinot P. (RNA 2012) 3
  5. A census of human soluble protein complexes. (PMID: 22939629) Havugimana P.C. … Emili A. (Cell 2012) 3

Products for MIF4GD Gene

Sources for MIF4GD Gene

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