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Aliases for MIF-AS1 Gene

Subcategory (RNA class) for MIF-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for MIF-AS1 Gene

  • MIF Antisense RNA 1 2 3 5
  • MIF-AS 3

External Ids for MIF-AS1 Gene

Summaries for MIF-AS1 Gene

GeneCards Summary for MIF-AS1 Gene

MIF-AS1 (MIF Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for MIF-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIF-AS1 Gene

Genomics for MIF-AS1 Gene

Regulatory Elements for MIF-AS1 Gene

Enhancers for MIF-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH22H022926 1.9 FANTOM5 Ensembl ENCODE dbSUPER 20.3 +966.8 966820 10 HDGF PKNOX1 ATF1 GATA2 ZNF143 ATF7 RUNX3 MCM3 MCM5 ZC3H11A TOP3B MIF-AS1 IGLV5-52 ENSG00000272578 IGLV3-4 IGLV2-5 MMP11 ENSG00000234630 ZNF70 IGLC2
GH22H022937 1.5 FANTOM5 ENCODE dbSUPER 20.3 +957.9 957905 6 HDGF ATF1 FOXA2 SIN3A YBX1 ZNF2 CBX5 ZNF143 ATF7 RUNX3 TOP3B MIF-AS1 MMP11 IGLV3-4 IGLV2-5 ZNF70 IGLC2 RSPH14 CHCHD10 IGLL5
GH22H024242 1.6 FANTOM5 Ensembl ENCODE 18.7 -346.3 -346299 6 HDGF ARNT ZNF493 ZFP64 ARID4B SIN3A GLI4 ZBTB7B ZNF207 ZNF143 ENSG00000272578 ZNF70 SPECC1L POM121L9P ENSG00000232545 ENSG00000272973 SNRPD3 MIF-AS1 RN7SL268P SUSD2
GH22H024010 1.4 ENCODE dbSUPER 21.3 -112.7 -112713 2 PKNOX1 FOXA2 ARID4B SIN3A ZNF2 YY1 ZNF766 ZNF143 ZNF207 FOS ENSG00000272973 ZDHHC8P1 ZNF70 SPECC1L MIF-AS1 SNRPD3 SUSD2 RN7SL268P GNAZ ENSG00000272578
GH22H023069 1.2 ENCODE dbSUPER 23.1 +827.7 827665 3 PKNOX1 ATF1 ARID4B ZNF2 GLIS2 CBX5 FOS ATF7 SP3 MCM3 MIF-AS1 DRICH1 MMP11 ZNF70 GNAZ PIR59232
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIF-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIF-AS1 Gene

Chromosome:
22
Start:
23,893,710 bp from pter
End:
23,898,930 bp from pter
Size:
5,221 bases
Orientation:
Minus strand

Genomic View for MIF-AS1 Gene

Genes around MIF-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIF-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIF-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIF-AS1 Gene

Proteins for MIF-AS1 Gene

Post-translational modifications for MIF-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIF-AS1 Gene

Domains & Families for MIF-AS1 Gene

Gene Families for MIF-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIF-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIF-AS1 Gene

Function for MIF-AS1 Gene

Phenotypes From GWAS Catalog for MIF-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIF-AS1 Gene

Localization for MIF-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIF-AS1 Gene

Pathways & Interactions for MIF-AS1 Gene

SuperPathways for MIF-AS1 Gene

No Data Available

Interacting Proteins for MIF-AS1 Gene

Gene Ontology (GO) - Biological Process for MIF-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIF-AS1 Gene

Drugs & Compounds for MIF-AS1 Gene

No Compound Related Data Available

Transcripts for MIF-AS1 Gene

mRNA/cDNA for MIF-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIF-AS1 Gene

No ASD Table

Relevant External Links for MIF-AS1 Gene

GeneLoc Exon Structure for
MIF-AS1
ECgene alternative splicing isoforms for
MIF-AS1

Expression for MIF-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIF-AS1 Gene

genes like me logo Genes that share expression patterns with MIF-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIF-AS1 Gene

Orthologs for MIF-AS1 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for MIF-AS1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 34
  • 97 (a)
OneToOne
Species where no ortholog for MIF-AS1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for MIF-AS1 Gene

ENSEMBL:
Gene Tree for MIF-AS1 (if available)
TreeFam:
Gene Tree for MIF-AS1 (if available)

Paralogs for MIF-AS1 Gene

No data available for Paralogs for MIF-AS1 Gene

Variants for MIF-AS1 Gene

Sequence variations from dbSNP and Humsavar for MIF-AS1 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
rs1000082926 -- 23,895,773(+) CATAC(C/G/T)GCCCC intron-variant
rs1000242672 -- 23,900,434(+) CTTAA(A/G)GACAT upstream-variant-2KB
rs1002472066 -- 23,895,714(+) TTAGG(A/T)GACTT intron-variant, downstream-variant-500B
rs1002534912 -- 23,897,579(+) ACCCA(A/G)TTCTG intron-variant
rs1002754971 -- 23,895,533(+) GGGTG(A/C)TGGAG downstream-variant-500B, splice-acceptor-variant

Structural Variations from Database of Genomic Variants (DGV) for MIF-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv4528n100 CNV gain 25217958
dgv4531n100 CNV gain 25217958
dgv8039n54 CNV gain 21841781
esv2724041 CNV deletion 23290073
esv3575443 CNV gain 25503493
esv3575444 CNV gain 25503493
esv3575445 CNV gain 25503493
esv3893457 CNV gain 25118596
esv3893461 CNV gain 25118596
nsv1062411 CNV gain 25217958
nsv1066891 CNV gain 25217958
nsv1110863 OTHER inversion 24896259
nsv3577 CNV insertion 18451855
nsv511075 OTHER complex 20534489
nsv526567 CNV gain 19592680
nsv588647 CNV gain 21841781
nsv7350 OTHER inversion 18451855
nsv834155 CNV gain+loss 17160897

Relevant External Links for MIF-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIF-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIF-AS1 Gene

Disorders for MIF-AS1 Gene

Relevant External Links for MIF-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIF-AS1

No disorders were found for MIF-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIF-AS1 Gene

Publications for MIF-AS1 Gene

  1. Association Between MIF-AS rs755622 and Nephrolithiasis Risk in a Chinese Population. (PMID: 26895959) Ma G … Zhang W (Medical science monitor : international medical journal of experimental and clinical research 2016) 2 3 60
  2. Variations in ncRNA gene LOC284889 and MIF-794CATT repeats are associated with malaria susceptibility in Indian populations. (PMID: 24066864) Jha AN … Thangaraj K (Malaria journal 2013) 2 3 60
  3. Variation at the NFATC2 locus increases the risk of thiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipril and rosiglitazone Medication (DREAM) study. (PMID: 20628086) Bailey SD … DREAM investigators (Diabetes care 2010) 3 60
  4. Gene-centric association signals for lipids and apolipoproteins identified via the HumanCVD BeadChip. (PMID: 19913121) Talmud PJ … BRIGHT Consortium (American journal of human genetics 2009) 3 60
  5. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 3 60

Products for MIF-AS1 Gene

Sources for MIF-AS1 Gene

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