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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

MICALL1 Gene

protein-coding   GIFtS: 48
GCID: GC22P038301

MICAL-like 1

  Search for MICALL1
in our new
 Human Malady Compendium 
Biological research products
for MICALL1
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
MICAL-Like 11 2     Molecule Interacting With Rab132 3
MIRAB131 2 3     MICAL-Like Protein 12
MICAL-L11 2     MIRab133
KIAA16681 3     

External Ids:    HGNC: 298041   Entrez Gene: 853772   Ensembl: ENSG000001001397   UniProtKB: Q8N3F83   

Export aliases for MICALL1 gene to outside databases

Previous GC identifers: GC22P036632 GC22P021269


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: MILK1_HUMAN, Q8N3F8
Function: May be a cytoskeletal regulator

Gene Wiki entry for MICALL1


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000022.10  NC_018933.1  NT_011520.12  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the MICALL1 gene promoter:
         POU2F2 (Oct-2.1)   Oct-B1   oct-B3   oct-B2   POU2F2   POU2F2C   POU2F1   POU2F1a   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidMICALL1 promoter sequence
   Search SABiosciences Chromatin IP Primers for MICALL1

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat MICALL1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 22q13.1   Ensembl cytogenetic band:  22q13.1   HGNC cytogenetic band: 22q13.1

MICALL1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
MICALL1 gene location

GeneLoc information about chromosome 22         GeneLoc Exon Structure

GeneLoc location for GC22P038301:  view genomic region     (about GC identifiers)

Start:
38,301,664 bp from pter      End:
38,338,829 bp from pter
Size:
37,166 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: MILK1_HUMAN, Q8N3F8 (See protein sequence)
Recommended Name: MICAL-like protein 1  
Size: 863 amino acids; 93441 Da
Subunit: Binds to Rab13
Subcellular location: Cytoplasm, cytoskeleton (By similarity)
Sequence caution: Sequence=CAD39036.1; Type=Frameshift; Positions=486, 507;
1 PDB 3D structure from and Proteopedia for MICALL1:
2KSP (3D)    
Secondary accessions: Q5TI16 Q7RTP5 Q8N3N8 Q9BVL9 Q9BY92 Q9UH43 Q9UH44 Q9UH45

Explore the universe of human proteins at neXtProt for MICALL1: NX_Q8N3F8

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q8N3F8

  • MICALL1 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins: NP_203744.1  
    ENSEMBL proteins: 
     ENSP00000404543   ENSP00000215957   ENSP00000406053   ENSP00000384608   ENSP00000416766  

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    Browse Sino Biological Recombinant Proteins
    Browse ProSpec Recombinant Proteins
    Uscn Proteins for MICALL1

    Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005737cytoplasm IEA--
    GO:0005856cytoskeleton IEA--


    MICALL1 for ontologies           About GeneDecksing



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    Uscn ELISAs and CLIAs for MICALL1


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    MICALL1 for domains           About GeneDecksing

    3 InterPro domains/families:
     IPR022735 DUF3585
     IPR001715 CH-domain
     IPR001781 Znf_LIM

    Graphical View of Domain Structure for InterPro Entry Q8N3F8

    ProtoNet protein and cluster: Q8N3F8

    2 Blocks protein families:
    IPB001715 Calponin-like actin-binding
    IPB001781 Zn-binding protein


    UniProtKB/Swiss-Prot: MILK1_HUMAN, Q8N3F8
    Similarity: Contains 1 CH (calponin-homology) domain
    Similarity: Contains 1 LIM zinc-binding domain


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: MILK1_HUMAN, Q8N3F8
    Function: May be a cytoskeletal regulator

    miRNA
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    hsa-miR-520f hsa-miR-328 hsa-miR-125a-5p hsa-miR-3167 hsa-miR-374c hsa-miR-9 hsa-miR-3150b-3p hsa-miR-125b
    SwitchGear 3'UTR luciferase reporter plasmidMICALL1 3' UTR sequence
    Inhib. RNA
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    Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005515protein binding IPI19945174
    GO:0008270zinc ion binding IEA--


    MICALL1 for ontologies           About GeneDecksing



    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for MICALL1

    STRING Interaction Network Preview (showing 5 interactants - click image to see 8)

    5/8 Interacting proteins for MICALL1 (Q8N3F82, 3 ENSP000002159574) via UniProtKB, MINT, STRING, and/or I2D (see all 8)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    YWHABP319462, 3, ENSP000003001614MINT-50981 I2D: score=4 STRING: ENSP00000300161
    YWHAGP619812, 3, ENSP000003063304MINT-50881 I2D: score=4 STRING: ENSP00000306330
    PACSIN3Q9UKS63, ENSP000002988384I2D: score=1 STRING: ENSP00000298838
    RAB1AP628203, ENSP000003872864I2D: score=1 STRING: ENSP00000387286
    PACSIN1Q9BY113, ENSP000002444584I2D: score=1 STRING: ENSP00000244458
    About this table

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for MICALL1
    Search CenterWatch for drugs/clinical trials and news about MICALL1 / MILK1 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for MICALL1 gene: 
    NM_033386.3  

    Unigene Cluster for MICALL1:

    MICAL-like 1
    Hs.517610  [show with all ESTs]
    Unigene Representative Sequence: AB051455
    6 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000445494 ENST00000215957(uc003aui.3) ENST00000489812 ENST00000454685
    ENST00000402631 ENST00000424008

    miRNA
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    hsa-miR-520f hsa-miR-328 hsa-miR-125a-5p hsa-miR-3167 hsa-miR-374c hsa-miR-9 hsa-miR-3150b-3p hsa-miR-125b
    SwitchGear 3'UTR luciferase reporter plasmidMICALL1 3' UTR sequence
    Inhib. RNA
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      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat MICALL1
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    Additional cDNA sequence: 

    AB051455.1 AJ496196.1 AK056603.1 AK127819.1 AL833860.1 AL834373.1 BC001090.2 BC082243.1 
    CR456437.1 CR749566.1 

    9 DOTS entries:

    DT.91987893  DT.445384  DT.40119502  DT.95275035  DT.100000098  DT.100791892  DT.120675737  DT.95275044 
    DT.121618611 

    24/180 AceView cDNA sequences (see all 180):

    CD369120 AL833860 CB322062 CA307559 BU542642 BQ641566 BM977064 BG392350 
    BK000466 BU784516 BE906912 H55178 AW955290 CD369909 BU788189 AA938082 
    CA431485 M79089 CA306483 BG319575 AA299470 BC001090 BC082243 AK127819 

    GeneLoc Exon Structure

    5/9 Alternative Splicing Database (ASD) splice patterns (SP) for MICALL1 (see all 9)    About this scheme

    ExUns: 1 ^ 2a · 2b ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8a · 8b ^ 9 ^ 10a · 10b ^ 11 ^ 12 ^ 13a · 13b · 13c ^ 14a · 14b ^ 15a · 15b ^ 16 ^ 17 ^ 18 ^ 19 ^
    SP1:                                                                                                                                                            
    SP2:        -     -     -                                                                                                                                       
    SP3:                    -                                                                                                                                       
    SP4:                    -           -                 -     -     -                                                                                             
    SP5:                                                                                                                                                            

    ExUns: 20
    SP1:      
    SP2:      
    SP3:      
    SP4:      
    SP5:      


    ECgene alternative splicing isoforms for MICALL1

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    MICALL1 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: GTCATCACTG

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image

    MICALL1 expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table
    Stem Cell Differentiation: 3 LifeMap Cells 
    NameCategory
    PureStem™ progenitor T42 (Embryonic Progenitor Cell)
    PureStem™ progenitor U31 (Embryonic Progenitor Cell)
    PureStem™ progenitor Z1 (Embryonic Progenitor Cell)
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization

    See MICALL1 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for MICALL1

    SOURCE GeneReport for Unigene cluster: Hs.517610
        SABiosciences Custom PCR Arrays for MICALL1
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    In Situ
    Assay Products:
     

     
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of animals.

    Orthologs for MICALL1 gene from 5/20 species (see all 20)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chicken
    (Gallus gallus)
    Aves MICALL11 MICAL-like 1 69.34(n)
    66.12(a)
      418032  NM_001201448.1  NP_001188377.1 
    lizard
    (Anolis carolinensis)
    Reptilia MICALL16
    --
    61(a)
    1 ↔ 1
    GL343460.1(59847-97079)
    African clawed frog
    (Xenopus laevis)
    Amphibia Xl.301562 Xenopus laevis transcribed sequence with weak similarity more 77.43(n)    48022287 
    zebrafish
    (Danio rerio)
    Actinopterygii micall11 MICAL-like 1 54.9(n)
    52.19(a)
      100149741  XM_001922140.2  XP_001922175.2 
    fruit fly
    (Drosophila melanogaster)
    Insecta MICAL-like1 CG11259-PA 43.33(n)
    32.84(a)
      39475  NM_140364.2  NP_648621.1 


    ENSEMBL Gene Tree for MICALL1 (if available)
    TreeFam Gene Tree for MICALL1 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for MICALL1 gene
    MICALL22  MICAL22  MICALCL2  MICAL12  EHBP12  MICAL32  EHBP1L12  
    6 SIMAP similar genes for MICALL1 using alignment to 4 protein entries:     MILK1_HUMAN (see all proteins):
    DKFZp686M2226    MICAL-L1    MICAL3    MICALCL    EHBP1    MICALL2

    MICALL1 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/622 NCBI SNPs in MICALL1 are shown (see all 622    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 22 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1445875321,2
    --38300304(+) GATCCA/GCCCAC 1 -- us2k10--------
    rs1911023781,2
    --38300447(+) GCCTCA/GGCCTC 1 -- us2k10--------
    rs43464871,2
    C,F,A,--38300474(+) acaggT/Catgag 1 -- us2k18Minor allele frequency- C:0.20NA WA CSA EA 133
    rs1818401721,2
    --38300497(+) ACCCCC/GCCCCC 1 -- us2k10--------
    rs2016634661,2
    --38300497(+) ACCCC-/GCCCCC 1 -- us2k10--------
    rs1863593861,2
    --38300556(+) TGCTGA/GTGTCA 1 -- us2k10--------
    rs1484754231,2
    --38300563(+) GTCAGG/TATCCT 1 -- us2k10--------
    rs121663101,2
    H--38300642(+) GGACAG/CGGCAG 1 -- us2k1 tfbs34Minor allele frequency- C:0.00NS EA 420
    rs57505071,2
    C,F,H,--38300785(+) AGCCCA/TGATTG 1 -- us2k19Minor allele frequency- T:0.11NS EA NA 1048
    rs610324131,2
    C,F,--38300795(+) GGCAAG/ACTGGG 1 -- us2k14Minor allele frequency- A:0.25WA CSA 123

    HapMap Linkage Disequilibrium report for MICALL1 (38301664 - 38338829 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
          Database of Genomic Variants (DGV) variations for MICALL1: --

    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing MICALL1
    DNA2.0 Custom Variant and Variant Library Synthesis for MICALL1

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for MICALL1 gene, integrated from 9 sources (see all 26):
    (articles sorted by number of sources associating them with MICALL1)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. MICALs, a family of conserved flavoprotein oxidoreductases, function in plexin-mediated axonal repulsion. (PubMed id 12110185)1, 2, 3 Terman J.R.... Kolodkin A.L. (2002)
    2. Identification of novel transcribed sequences on human chromosome 22 by expressed sequence tag mapping. (PubMed id 11258795)1, 2, 3 Hirosawa M....Ohara O. (2001)
    3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    4. A genome annotation-driven approach to cloning the human ORFeome. (PubMed id 15461802)1, 2 Collins J.E.... Dunham I. (2004)
    5. The DNA sequence of human chromosome 22. (PubMed id 10591208)1, 2 Dunham I....O'Brien K.P. (1999)
    6. Rabankyrin-5 interacts with EHD1 and Vps26 to regulate endocytic trafficking and retromer function. (PubMed id 22284051)1 Zhang J....Caplan S. (2012)
    7. MICAL-L1 is a tubular endosomal membrane hub that conn ects Rab35 and Arf6 with Rab8a. (PubMed id 21951725)1 Rahajeng J....Caplan S. (2012)
    8. MICAL-like1 mediates epidermal growth factor receptor endocytosis. (PubMed id 21795389)1 Abou-Zeid N....Zahraoui A. (2011)
    9. Initial characterization of the human central proteome. (PubMed id 21269460)2 Burkard T.R.... Colinge J. (2011)
    10. Mass spectrometric analysis of lysine ubiquitylation r eveals promiscuity at site level. (PubMed id 21139048)1 Danielsen J.M....Nielsen M.L. (2011)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
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    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 85377 HGNC: 29804 AceView: MICAL-L1 Ensembl:ENSG00000100139 euGenes: HUgn85377
    ECgene: MICALL1 H-InvDB: MICALL1

    (According to HUGE)
    About This Section
    HUGE: KIAA1668

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for MICALL1 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for MICALL1 gene:
    Search GeneIP for patents involving MICALL1

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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    GeneCards Homepage - Last full update: 19 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013

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