MICALL1 Gene
protein-coding GIFtS : 48
GCID: GC22 P038301
MICAL-like 1
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Aliasesfor MICALL1 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases MICAL-Like 1 1 2 Molecule Interacting With Rab132 3 MIRAB131 2 3 MICAL-Like Protein 12 MICAL-L11 2 MIRab133 KIAA16681 3
Export aliases for MICALL1 gene to outside databases Previous GC identifers: GC22P036632 GC22P021269
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Summariesfor MICALL1 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section UniProtKB/Swiss-Prot: MILK1_HUMAN, Q8N3F8 Function : May be a cytoskeletal regulatorGene Wiki entry for MICALL1
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Genomic Viewsfor MICALL1 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000022.10 NC_018933.1 NT_011520.12 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the MICALL1 gene promoter: POU2F2 (Oct-2.1) Oct-B1 oct-B3 oct-B2 POU2F2 POU2F2C POU2F1 POU2F1a Other transcription factors Search SABiosciences Chromatin IP Primers for MICALL1 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat MICALL1
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 22q13.1 Ensembl cytogenetic band: 22q13.1 HGNC cytogenetic band: 22q13.1 MICALL1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 22 GeneLoc Exon Structure
GeneLoc location for GC22P038301: view genomic region
(about GC identifiers )
Start:
38,301,664 bp from pter
End:
38,338,829 bp from pter
Size:
37,166 bases
Orientation:
plus strand
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Proteinsfor MICALL1 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: MILK1_HUMAN, Q8N3F8 (See
protein sequence )Recommended Name: MICAL-like protein 1 Size : 863 amino acids; 93441 Da
Subunit : Binds to Rab13
Subcellular location : Cytoplasm, cytoskeleton (By similarity)
Sequence caution : Sequence=CAD39036.1; Type=Frameshift; Positions=486, 507;
1 PDB 3D structure from and Proteopedia for MICALL1 :2KSP (3D)
 
Secondary accessions : Q5TI16 Q7RTP5 Q8N3N8 Q9BVL9 Q9BY92 Q9UH43 Q9UH44 Q9UH45Explore the universe of human proteins at neXtProt for MICALL1: NX_Q8N3F8 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q8N3F8 MICALL1 Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins: NP_203744.1 ENSEMBL proteins: ENSP00000404543 ENSP00000215957 ENSP00000406053 ENSP00000384608 ENSP00000416766 Human Recombinant Protein Products: Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view) : About this table
MICALL1 for ontologies About GeneDecksing MICALL1 Antibody Products: Assay Products for MICALL1:
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Protein
Domains / Familiesfor MICALL1 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
MICALL1 for domains About GeneDecksing 3 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q8N3F8 ProtoNet protein and cluster: Q8N3F8
2 Blocks protein families : IPB001715 Calponin-like actin-binding IPB001781 Zn-binding protein UniProtKB/Swiss-Prot: MILK1_HUMAN, Q8N3F8 Similarity : Contains 1 CH (calponin-homology) domainSimilarity : Contains 1 LIM zinc-binding domain
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Functionfor MICALL1 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: MILK1_HUMAN, Q8N3F8 Function : May be a cytoskeletal regulator
Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for MICALL1 (see all 2 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for MICALL1OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: MICALL1 (NM_033386 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for MICALL1 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat MICALL1
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for MICALL1
Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view) : About this table
MICALL1 for ontologies About GeneDecksing
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Pathways & Interactionsfor MICALL1 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for MICALL1 STRING Interaction
Network Preview (showing 5 interactants - click image to see 8)5/8 Interacting proteins for MICALL1 (Q8N3F8 2 , 3 ENSP00000215957 4 ) via UniProtKB, MINT, STRING , and/or I2D (see all 8 )About this table
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Drugs & Compoundsfor MICALL1 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for MICALL1 Search CenterWatch for drugs/clinical trials and news about MICALL1 / MILK1
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Transcriptsfor MICALL1 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for MICALL1 gene: NM_033386.3 Unigene Cluster for MICALL1:
MICAL-like 1 Hs.517610 [show with all ESTs ] Unigene Representative Sequence: AB051455 6 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000445494 ENST00000215957 (uc003aui.3 ) ENST00000489812 ENST00000454685 ENST00000402631 ENST00000424008 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for MICALL1 (see all 2 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for MICALL1OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: MICALL1 (NM_033386 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for MICALL1 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat MICALL1
Additional cDNA sequence: AB051455.1 AJ496196.1 AK056603.1 AK127819.1 AL833860.1 AL834373.1 BC001090.2 BC082243.1 CR456437.1 CR749566.1
9 DOTS entries : DT.91987893 DT.445384
DT.40119502 DT.95275035 DT.100000098 DT.100791892 DT.120675737 DT.95275044 DT.121618611 24/180 AceView cDNA sequences (see all 180 ):
CD369120 AL833860 CB322062 CA307559 BU542642 BQ641566 BM977064 BG392350 BK000466 BU784516 BE906912 H55178 AW955290 CD369909 BU788189 AA938082 CA431485 M79089 CA306483 BG319575 AA299470 BC001090 BC082243 AK127819 GeneLoc Exon Structure 5/9 Alternative Splicing Database (ASD) splice patterns (SP) for MICALL1 (see all 9 ) About this scheme ExUns: 1 ^ 2a · 2b ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8a · 8b ^ 9 ^ 10a · 10b ^ 11 ^ 12 ^ 13a · 13b · 13c ^ 14a · 14b ^ 15a · 15b ^ 16 ^ 17 ^ 18 ^ 19 ^ SP1 :                                                     SP2 :   -   -   -                                               SP3 :       -                                               SP4 :       -     -       -   -   -                                 SP5 :                                                    
ExUns: 20 SP1 :   SP2 :   SP3 :   SP4 :   SP5 :  
ECgene alternative splicing isoforms for MICALL1
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Expression for MICALL1 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section MICALL1 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: GTCATCACTG
About this image MICALL1 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table See MICALL1 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for MICALL1 SOURCE GeneReport for Unigene cluster: Hs.517610 SABiosciences Custom PCR Arrays for MICALL1 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for MICALL1Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse / rat MICALL1 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat MICALL1 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat MICALL1 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for MICALL1
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Orthologsfor MICALL1 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of animals.
Orthologs for MICALL1 gene from 5/20 species (see all 20 ) About this table
ENSEMBL Gene Tree for MICALL1 (if available)TreeFam Gene Tree for MICALL1 (if available)
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Paralogsfor MICALL1 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for MICALL1 gene MICALL2 2 MICAL2 2 MICALCL 2 MICAL1 2 EHBP1 2 MICAL3 2 EHBP1L1 2 6 SIMAP similar genes for MICALL1 using alignment to 4 protein entries: MILK1_HUMAN (see all proteins ):DKFZp686M2226 MICAL-L1 MICAL3 MICALCL EHBP1 MICALL2
MICALL1 for paralogs About GeneDecksing
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Genomic Variantsfor MICALL1 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 22 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for MICALL1 (38301664 - 38338829 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for MICALL1: --
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing MICALL1
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Disorders
/ Diseasesfor MICALL1 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section --
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Publicationsfor MICALL1 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for MICALL1 gene, integrated from 9 sources (see all 26 ): (articles sorted by number of sources associating them with MICALL1) Utopia : connect your pdf to the dynamic world of online information
MICALs, a family of conserved flavoprotein oxidoreductases, function in plexin-mediated axonal repulsion. (PubMed id 12110185) 1 , 2 , 3 Terman J.R.... Kolodkin A.L. (2002) Identification of novel transcribed sequences on human chromosome 22 by expressed sequence tag mapping. (PubMed id 11258795) 1 , 2 , 3 Hirosawa M....Ohara O. (2001) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) A genome annotation-driven approach to cloning the human ORFeome. (PubMed id 15461802) 1 , 2 Collins J.E.... Dunham I. (2004) The DNA sequence of human chromosome 22. (PubMed id 10591208) 1 , 2 Dunham I....O'Brien K.P. (1999) Rabankyrin-5 interacts with EHD1 and Vps26 to regulate endocytic trafficking and retromer function. (PubMed id 22284051) 1 Zhang J....Caplan S. (2012) MICAL-L1 is a tubular endosomal membrane hub that conn ects Rab35 and Arf6 with Rab8a. (PubMed id 21951725) 1 Rahajeng J....Caplan S. (2012) MICAL-like1 mediates epidermal growth factor receptor endocytosis. (PubMed id 21795389) 1 Abou-Zeid N....Zahraoui A. (2011) Initial characterization of the human central proteome. (PubMed id 21269460) 2 Burkard T.R.... Colinge J. (2011) Mass spectrometric analysis of lysine ubiquitylation r eveals promiscuity at site level. (PubMed id 21139048) 1 Danielsen J.M....Nielsen M.L. (2011)
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External Searches for MICALL1 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing MICALL1 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing MICALL1 gene
(According to HUGE )
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Specialized Databases showing MICALL1 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for MICALL1 Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for MICALL1 gene: Search GeneIP for patents involving MICALL1 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor MICALL1 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies OriGene shRNA RFP for MICALL1 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for MICALL1 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for MICALL1 Browse OriGene Protein Over-expression Lysates Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for MICALL1 OriGene 3'-UTR Clone for MICALL1 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for MICALL1 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for MICALL1 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs OriGene Purified Protein for MICALL1 OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for MICALL1 OriGene Custom Protein Services for MICALL1 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat MICALL1 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing MICALL1 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat MICALL1 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat MICALL1 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat MICALL1 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat MICALL1
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MICALL1 Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for MICALL1
ThermoFisher Antibodies for MICALL1
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat MICALL1
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