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Aliases for MICAL1 Gene

Aliases for MICAL1 Gene

  • Microtubule Associated Monooxygenase, Calponin And LIM Domain Containing 1 2 3
  • NICAL 3 4 6
  • MICAL 3 4 6
  • NEDD9-Interacting Protein With Calponin Homology And LIM Domains 3 4
  • Molecule Interacting With CasL Protein 1 3 4
  • MICAL-1 3 4
  • Microtubule Associated Monoxygenase, Calponin And LIM Domain Containing 1 3
  • NEDD9 Interacting Protein With Calponin Homology And LIM Domains 2
  • Protein-Methionine Sulfoxide Oxidase MICAL1 3
  • CasL Interacting Molecule 3
  • EC 1.14.13.- 4

External Ids for MICAL1 Gene

Previous HGNC Symbols for MICAL1 Gene

  • NICAL

Previous GeneCards Identifiers for MICAL1 Gene

  • GC06M109872
  • GC06M109766
  • GC06M107331

Summaries for MICAL1 Gene

GeneCards Summary for MICAL1 Gene

MICAL1 (Microtubule Associated Monooxygenase, Calponin And LIM Domain Containing 1) is a Protein Coding gene. GO annotations related to this gene include actin binding and FAD binding. An important paralog of this gene is SMTNL2.

UniProtKB/Swiss-Prot for MICAL1 Gene

  • Monooxygenase that promotes depolymerization of F-actin by mediating oxidation of specific methionine residues on actin. Acts by modifying actin subunits through the addition of oxygen to form methionine-sulfoxide, leading to promote actin filament severing and prevent repolymerization (Probable). Acts as a cytoskeletal regulator that connects NEDD9 to intermediate filaments. Also acts as a negative regulator of apoptosis via its interaction with STK38 and STK38L; acts by antagonizing STK38 and STK38L activation by MST1/STK4.

Gene Wiki entry for MICAL1 Gene

No data available for Entrez Gene Summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MICAL1 Gene

Genomics for MICAL1 Gene

Regulatory Elements for MICAL1 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for MICAL1 Gene

Start:
109,444,062 bp from pter
End:
109,465,968 bp from pter
Size:
21,907 bases
Orientation:
Minus strand

Genomic View for MICAL1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for MICAL1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MICAL1 Gene

Proteins for MICAL1 Gene

  • Protein details for MICAL1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8TDZ2-MICA1_HUMAN
    Recommended name:
    Protein-methionine sulfoxide oxidase MICAL1
    Protein Accession:
    Q8TDZ2
    Secondary Accessions:
    • B7Z3R5
    • E1P5F0
    • Q7Z633
    • Q8IVS9
    • Q96G47
    • Q9H6X6
    • Q9H7I0
    • Q9HAA1
    • Q9UFF7

    Protein attributes for MICAL1 Gene

    Size:
    1067 amino acids
    Molecular mass:
    117875 Da
    Cofactor:
    Name=FAD; Xref=ChEBI:CHEBI:57692;
    Quaternary structure:
    • Interacts with STK38 and STK38L (By similarity). Interacts with RAB8A (By similarity). Associates with the SH3 domain of NEDD9. Interacts with VIM and PLXNA3. Interacts with RAB1B.

    Three dimensional structures from OCA and Proteopedia for MICAL1 Gene

    Alternative splice isoforms for MICAL1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for MICAL1 Gene

Proteomics data for MICAL1 Gene at MOPED

Post-translational modifications for MICAL1 Gene

  • Ubiquitination at Lys488 and Lys637
  • Modification sites at PhosphoSitePlus

Other Protein References for MICAL1 Gene

No data available for DME Specific Peptides for MICAL1 Gene

Domains for MICAL1 Gene

Graphical View of Domain Structure for InterPro Entry

Q8TDZ2

UniProtKB/Swiss-Prot:

MICA1_HUMAN :
  • Q8TDZ2
Domain:
  • The C-terminal coiled coil part contains the plexin-interacting region
  • Contains 1 CH (calponin-homology) domain.
  • Contains 1 LIM zinc-binding domain.
Family:
  • Belongs to the Mical family.
genes like me logo Genes that share domains with MICAL1: view

No data available for Gene Families for MICAL1 Gene

Function for MICAL1 Gene

Molecular function for MICAL1 Gene

UniProtKB/Swiss-Prot BiophysicochemicalProperties: Kinetic parameters: KM=4.7 uM for F-actin (at saturing NADPH concentration) {ECO:0000269 PubMed:21864500};
UniProtKB/Swiss-Prot CatalyticActivity: [protein]-methionine + NADPH + O(2) = [protein]-methionine-sulfoxide + NADP(+) + H(2)O
UniProtKB/Swiss-Prot Function: Monooxygenase that promotes depolymerization of F-actin by mediating oxidation of specific methionine residues on actin. Acts by modifying actin subunits through the addition of oxygen to form methionine-sulfoxide, leading to promote actin filament severing and prevent repolymerization (Probable). Acts as a cytoskeletal regulator that connects NEDD9 to intermediate filaments. Also acts as a negative regulator of apoptosis via its interaction with STK38 and STK38L; acts by antagonizing STK38 and STK38L activation by MST1/STK4.

Enzyme Numbers (IUBMB) for MICAL1 Gene

Gene Ontology (GO) - Molecular Function for MICAL1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003779 actin binding IDA 21864500
GO:0004497 monooxygenase activity --
GO:0005515 protein binding IPI 11827972
GO:0008270 zinc ion binding IEA --
GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IDA 21864500
genes like me logo Genes that share ontologies with MICAL1: view

Phenotypes for MICAL1 Gene

GenomeRNAi human phenotypes for MICAL1:
genes like me logo Genes that share phenotypes with MICAL1: view

Animal Model Products

CRISPR Products

miRNA for MICAL1 Gene

miRTarBase miRNAs that target MICAL1

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for MICAL1

In Situ Assay Products

Flow Cytometry Products

No data available for Animal Models , Transcription Factor Targeting and HOMER Transcription for MICAL1 Gene

Localization for MICAL1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for MICAL1 Gene

Cytoplasm. Cytoplasm, cytoskeleton.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for MICAL1 Gene COMPARTMENTS Subcellular localization image for MICAL1 gene
Compartment Confidence
cytoskeleton 5
cytosol 3
golgi apparatus 1

Gene Ontology (GO) - Cellular Components for MICAL1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IDA 11827972
GO:0005882 intermediate filament NAS 11827972
genes like me logo Genes that share ontologies with MICAL1: view

Pathways for MICAL1 Gene

SuperPathways for MICAL1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for MICAL1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001933 negative regulation of protein phosphorylation IEA --
GO:0007010 cytoskeleton organization NAS 11827972
GO:0007165 signal transduction NAS 11827972
GO:0019417 sulfur oxidation ISS --
GO:0030042 actin filament depolymerization IDA 21864500
genes like me logo Genes that share ontologies with MICAL1: view

No data available for Pathways by source for MICAL1 Gene

Compounds for MICAL1 Gene

(1) HMDB Compounds for MICAL1 Gene

Compound Synonyms Cas Number PubMed IDs
FAD
  • 1H-Purin-6-amine flavin dinucleotide
146-14-5
genes like me logo Genes that share compounds with MICAL1: view

Transcripts for MICAL1 Gene

Unigene Clusters for MICAL1 Gene

Microtubule associated monoxygenase, calponin and LIM domain containing 1:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for MICAL1

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MICAL1 Gene

ExUns: 1 ^ 2a · 2b ^ 3a · 3b · 3c · 3d ^ 4a · 4b · 4c · 4d ^ 5a · 5b · 5c ^ 6a · 6b · 6c · 6d ^ 7a · 7b · 7c · 7d ^ 8a · 8b ^ 9 ^ 10 ^
SP1: - - - - - - - - - - - -
SP2: - - - - - -
SP3:
SP4:
SP5:
SP6:
SP7:
SP8:
SP9: - - - - - - - -
SP10:
SP11:
SP12:
SP13: - - - - - - -
SP14: - - - - - -
SP15:
SP16: - - - - - - - - - - - - - -
SP17: - - - - - - - -
SP18: - -
SP19: - - - - -
SP20:
SP21:
SP22:
SP23:

ExUns: 11 ^ 12a · 12b ^ 13a · 13b · 13c ^ 14a · 14b ^ 15 ^ 16a · 16b · 16c ^ 17a · 17b · 17c · 17d ^ 18 ^ 19a · 19b ^ 20 ^ 21a · 21b ^ 22 ^ 23a · 23b ^ 24a ·
SP1: - - - - - -
SP2: - - - - - -
SP3: - - - - - - - -
SP4: - - - - - -
SP5: -
SP6:
SP7:
SP8:
SP9:
SP10: - - - - -
SP11: - - -
SP12:
SP13:
SP14:
SP15: - - -
SP16:
SP17:
SP18:
SP19:
SP20:
SP21:
SP22:
SP23:

ExUns: 24b ^ 25a · 25b · 25c ^ 26a · 26b ^ 27 ^ 28a · 28b ^ 29 ^ 30a · 30b ^ 31
SP1: - - - -
SP2: - - - -
SP3: - - - -
SP4: - - - -
SP5:
SP6: - -
SP7: -
SP8: - - -
SP9:
SP10:
SP11:
SP12:
SP13:
SP14:
SP15:
SP16:
SP17:
SP18:
SP19:
SP20:
SP21:
SP22:
SP23:

Relevant External Links for MICAL1 Gene

GeneLoc Exon Structure for
MICAL1
ECgene alternative splicing isoforms for
MICAL1

Expression for MICAL1 Gene

mRNA expression in normal human tissues for MICAL1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for MICAL1 Gene

This gene is overexpressed in Whole Blood (8.7).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for MICAL1 Gene

SOURCE GeneReport for Unigene cluster for MICAL1 Gene Hs.33476

mRNA Expression by UniProt/SwissProt for MICAL1 Gene

Q8TDZ2-MICA1_HUMAN
Tissue specificity: Expressed in the thymus, lung, spleen, kidney, testis and hematopoietic cells.
genes like me logo Genes that share expressions with MICAL1: view

In Situ Assay Products

Orthologs for MICAL1 Gene

This gene was present in the common ancestor of animals.

Orthologs for MICAL1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia MICAL1 35
  • 99.2 (n)
  • 98.99 (a)
MICAL1 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia MICAL1 35
  • 86.47 (n)
  • 85.85 (a)
MICAL1 36
  • 86 (a)
OneToOne
dog
(Canis familiaris)
Mammalia MICAL1 35
  • 84.15 (n)
  • 82.15 (a)
MICAL1 36
  • 79 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Mical1 35
  • 83.06 (n)
  • 82.04 (a)
Mical1 16
Mical1 36
  • 81 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia MICAL1 36
  • 62 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia MICAL1 36
  • 51 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Mical1 35
  • 82.32 (n)
  • 79.83 (a)
chicken
(Gallus gallus)
Aves MICAL1 35
  • 65.09 (n)
  • 59.54 (a)
MICAL1 36
  • 49 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia MICAL1 36
  • 64 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii mical1 36
  • 38 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta Mical 36
  • 9 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 39 (a)
OneToMany
Species with no ortholog for MICAL1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for MICAL1 Gene

ENSEMBL:
Gene Tree for MICAL1 (if available)
TreeFam:
Gene Tree for MICAL1 (if available)

Paralogs for MICAL1 Gene

Selected SIMAP similar genes for MICAL1 Gene using alignment to 5 proteins:

genes like me logo Genes that share paralogs with MICAL1: view

Variants for MICAL1 Gene

Sequence variations from dbSNP and Humsavar for MICAL1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type MAF
rs735077 -- 109,447,817(+) TCCAC(C/T)GGGTA intron-variant
rs752260 -- 109,449,605(+) TGACC(C/T)GGGGG intron-variant
rs752261 -- 109,449,666(+) TTGGG(A/G)GTCAC reference, synonymous-codon
rs752262 -- 109,449,796(+) GGTGA(C/G)GGTAA intron-variant
rs910730 -- 109,447,092(+) TGCTC(A/G)TAGCC reference, synonymous-codon

Relevant External Links for MICAL1 Gene

HapMap Linkage Disequilibrium report
MICAL1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for MICAL1 Gene

Disorders for MICAL1 Gene

Relevant External Links for MICAL1

Genetic Association Database (GAD)
MICAL1
Human Genome Epidemiology (HuGE) Navigator
MICAL1
genes like me logo Genes that share disorders with MICAL1: view

No data available for UniProtKB/Swiss-Prot for MICAL1 Gene

Publications for MICAL1 Gene

  1. MICAL, a novel CasL interacting molecule, associates with vimentin. (PMID: 11827972) Suzuki T. … Hirai H. (J. Biol. Chem. 2002) 2 3 4
  2. MICALs, a family of conserved flavoprotein oxidoreductases, function in plexin-mediated axonal repulsion. (PMID: 12110185) Terman J.R. … Kolodkin A.L. (Cell 2002) 3 4
  3. MICAL-1 isoforms, novel rab1 interacting proteins. (PMID: 12788069) Weide T. … Barnekow A. (Biochem. Biophys. Res. Commun. 2003) 3 4
  4. The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall A.J. … Beck S. (Nature 2003) 3 4
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4

Products for MICAL1 Gene

Sources for MICAL1 Gene

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