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MIAT Gene

RNA gene   GIFtS: 29
GCID: GC22P027042

Myocardial Infarction Associated Transcript (Non-Protein...

(Previous name: chromosome 22 open reading frame 35)
(Previous symbol: C22orf35)
  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Subcategory (RNA class): lncRNA

Quality score for this RNA gene is 4.2

Aliases
Myocardial Infarction Associated Transcript (Non-Protein Coding)1 2     GOMAFU2
C22orf351 2 5     LINC000662
Chromosome 22 Open Reading Frame 351     NCRNA000662
Long Intergenic Non-Protein Coding RNA 661     RNCR22
Non-Protein Coding RNA 661     

External Ids:    HGNC: 334251   Entrez Gene: 4408232   Ensembl: ENSG000002257837   OMIM: 6110825   
ORGUL members:    fRNAdb10:FR306226 FR407597      
H-InvDB12:HIT000383697    
NCBI13:AB263417    
NONCODE14:n377300 n377433 n377349 n377429 n378111 see all 30    
RNAdb15:EVF48115    

Export aliases for MIAT gene to outside databases

Previous GC identifers: GC22P025372 GC22P010000


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for MIAT Gene:
This gene encodes a non-coding RNA that may constitute a component of the nuclear matrix. Altered expression of
this locus has been reported to be associated with a susceptibility to myocardial infarction.(provided by RefSeq,
Feb 2010)

GeneCards Summary for MIAT Gene:
MIAT (myocardial infarction associated transcript (non-protein coding)) is an RNA gene, and is affiliated with the lncRNA class. Diseases associated with MIAT include myocardial infarction, and obesity.

Gene Wiki entry for MIAT Gene

fRNAdb sequence ontologies for MIAT - the ORGUL cluster for this gene includes several descriptions:
nc_conserved_region - Non-coding region of sequence similarity by descent from a common ancestor.
ncRNA - An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product.

View fRNAdb secondary structures for MIAT

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence:
NC_000022.11  NC_018933.2  NT_011520.13  
Regulatory elements:
   Regulatory transcription factor binding sites in the MIAT gene promoter:
         Bach1   GR   NF-1   Bach2   GR-beta   NRSF form 2   LCR-F1   C/EBPalpha   GR-alpha   Pax-4a   
         Other transcription factors

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Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat MIAT


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 22q12.1   Ensembl cytogenetic band:  22q12.1   HGNC cytogenetic band: 22q12.1

MIAT Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
MIAT gene location

GeneLoc information about chromosome 22         GeneLoc Exon Structure

GeneLoc location for GC22P027042:  view genomic region     (about GC identifiers)

Start:
27,042,392 bp from pter      End:
27,072,441 bp from pter
Size:
30,050 bases      Orientation:
plus strand
ORGUL member locations:
Legend (see complete legend)

ORGUL Member Locations for MIAT

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
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UniProtKB: --


(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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HGNC Gene Families:
LNCRNA: Long non-coding RNAs

  --

(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Animal Models:
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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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Interactions:

    Search GeneGlobe Interaction Network for MIAT

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Tocris compounds for MIAT



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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1 fRNAdb Secondary structure:


Unigene Cluster for MIAT:

Myocardial infarction associated transcript (non-protein coding)
Hs.517502  [show with all ESTs]
Unigene Representative Sequence: NR_003491
Selected Ensembl transcripts including schematic representations, and UCSC links where relevant (see all 21):
ENST00000421867(lincRNA) ENST00000418918(lincRNA) ENST00000440347(lincRNA) ENST00000450203(lincRNA) ENST00000430483(lincRNA)
ENST00000439738(lincRNA) ENST00000422403(lincRNA) ENST00000436238(lincRNA) ENST00000425476(lincRNA) ENST00000455640(lincRNA)
ENST00000451141(lincRNA) ENST00000452429(lincRNA) ENST00000423278(lincRNA)(uc003ada.2) ENST00000413665(lincRNA)
ENST00000421151(lincRNA)(uc003adc.2 uc003add.2) ENST00000456129(lincRNA) ENST00000430080(lincRNA)(uc003adb.2)
ENST00000458302(lincRNA)
miRNA
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Additional mRNA sequence: 

AB263414.1 AB263415.1 AB263416.1 AB263417.1 AK095686.1 AK098753.1 AK098833.1 AK127256.1 
AL110216.2 NR_003491.2 NR_033319.1 NR_033320.1 NR_033321.1 

Selected DOTS entries (see all 28):

DT.120629076  DT.212019  DT.100829653  DT.112393  DT.100788204  DT.100021397  DT.100788203  DT.100758484 
DT.100833141  DT.100839565  DT.212018  DT.120629148  DT.99954426  DT.405600  DT.120629078  DT.120629169 
DT.40207210  DT.40316032  DT.91977375  DT.100659034  DT.100659361  DT.100769994  DT.120629046  DT.120629053 

Selected AceView cDNA sequences (see all 274):

AW163667 CD107330 BU584611 BM722767 BU676415 AI681362 AI816443 CB155436 
BM685297 AA830795 BQ027417 BM728429 Z45264 AI347717 AW139419 BU584655 
BE503635 AI221363 AI879183 BX463473 AI929474 CD723627 H55143 BM709811 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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Expression evidence for MIAT:H-invDB

MIAT expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: AATGTAGCTG
MIAT Expression
About this image


MIAT expression in embryonic tissues and stem cells    About this table
Data from LifeMap, the Embryonic Development and Stem Cells Database
 selected tissues (see all 6) fully expand
 
 Inner Cell Mass (Early Embryonic Tissues)    fully expand to see all 4 entries
         Human embryonic stem cells (family)
 
 Neural Crest (Gastrulation Derivatives)    fully expand to see all 3 entries
         PureStem SK11, NCr-fac & Meso-prx Progenitor
 
 Eye (Sensory Organs)    fully expand to see all 3 entries
         Inner Nuclear Layer
 
 Paraxial Mesoderm (Gastrulation Derivatives)
         PureStem SK11, NCr-fac & Meso-prx Progenitor
 
 Mesoderm (Gastrulation Derivatives)
         PureStem 7SMOO32, NCr-fac & Meso Progenitor
MIAT Protein expression data from MOPED1, PaxDb2 and MaxQB3 --

SOURCE GeneReport for Unigene cluster: Hs.517502
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In Situ
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(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of human and mouse.

Orthologs for MIAT gene from 1 species (see representative species )    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia Miat5 myocardial infarction associated transcript (non-protein more   --   5 (54.59 cM) 112213228 


ENSEMBL Gene Tree for MIAT (if available)
TreeFam Gene Tree for MIAT (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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  --

(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for MIAT (see all 500)    About this table    
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 22 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1815184471,2
--10974822(+) GGACAA/GGTAAC 4 -- us2k10--------
rs1852214521,2
--10974880(+) TGGGCA/GGAACT 4 -- us2k10--------
rs1895748471,2
--10974922(+) AGGTCA/GCTGGA 4 -- us2k10--------
rs1819008161,2
--10975082(+) TTTTGC/TATTTT 4 -- us2k10--------
rs1853501681,2
--10975105(+) GGTTTC/TGCTTT 4 -- us2k10--------
rs1896681621,2
--10975193(+) CAGGCA/GTGAGC 4 -- us2k10--------
rs1814819841,2
--10975451(+) GGCTGG/TTCTCG 4 -- us2k10--------
rs57616631,2
C,A--10975595(+) cccggG/Cctaga 4 -- us2k15Minor allele frequency- C:0.34NA CSA WA EA 361
rs563717141,2
C--10975710(+) ACACCC/TGGCTA 4 -- us2k10--------
rs1410318361,2
C--10975711(+) CACCCA/GGCTAA 4 -- us2k10--------

HapMap Linkage Disequilibrium report for MIAT (27042392 - 27072441 bp)

Structural Variations
     Database of Genomic Variants (DGV) 1 variation for MIAT:    About this table    
Variant IDTypeSubtypePubMed ID
nsv7350OTHER Inversion18451855

Human Gene Mutation Database (HGMD): MIAT
Site Specific Mutation Identification with PCR Assays
Search QIAGEN SeqTarget long-range PCR primers for resequencing MIAT
DNA2.0 Custom Variant and Variant Library Synthesis for MIAT

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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OMIM gene information: 611082OMIM information:   
OMIM disorders: 608446  
5 diseases for MIAT:    
About MalaCards
myocardial infarction    obesity    schizophrenia    retinitis
neuronitis


MIAT for disorders           About GeneDecksing

Genetic Association Database (GAD): MIAT

Export disorders for MIAT gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for MIAT gene, integrated from 10 sources (see all 15):
(articles sorted by number of sources associating them with MIAT)
    Utopia: connect your pdf to the dynamic
world of online information

  1. A long non-coding RNA signature in glioblastoma multiforme predicts survival. (PubMed id 23726844)1, 3 Zhang X.Q....Leung G.K. (Neurobiol. Dis. 2013)
  2. The long non-coding RNA Gomafu is acutely regulated in response to neuronal activation and involved in schizophrenia-associated alternative splicing. (PubMed id 23628989)1, 3 Barry G....Mattick J.S. (Mol. Psychiatry 2013)
  3. The mRNA-like noncoding RNA Gomafu constitutes a novel nuclear domain in a subset of neurons. (PubMed id 17623775)1, 3 Sone M....Nakagawa S. (J. Cell. Sci. 2007)
  4. Identification of a novel non-coding RNA, MIAT, that confers risk of myocardial infarction. (PubMed id 17066261)1, 3 Ishii N....Tanaka T. (J. Hum. Genet. 2006)
  5. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PubMed id 23251661)1 Comuzzie A.G....Butte N.F. (PLoS ONE 2012)
  6. Genes linked to energy metabolism and immunoregulatory mechanisms are associated with subcutaneous adipose tissue distribution in HIV-infected men. (PubMed id 21897333)1 Irvin M.R....Arnett D.K. (Pharmacogenet. Genomics 2011)
  7. Genome-wide association study of electrocardiographic and heart rate variability traits: the Framingham Heart Study. (PubMed id 17903306)4 Newton-Cheh C....Larson M.G. (BMC Med. Genet. 2007)
  8. Framingham Heart Study 100K project: genome-wide associations for cardiovascular disease outcomes. (PubMed id 17903304)4 Larson M.G....Levy D. (BMC Med. Genet. 2007)
  9. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)1 Kimura K.... Sugano S. (Genome Res. 2006)
  10. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1 Ota T.... Sugano S. (Nat. Genet. 2004)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 440823 HGNC: 33425 AceView: LOC388889 Ensembl:ENSG00000225783 euGenes: HUgn440823
ECgene: MIAT H-InvDB: MIAT

(According to HUGE)
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(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for MIAT Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for MIAT gene:
Search GeneIP for patents involving MIAT

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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The GeneCards human gene database gene index: 1 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

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