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Category Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21

GIFtS
-

MIAT Gene

RNA gene GIFtS: 31
GCID: GC22P027042

myocardial infarction associated transcript (non-protein...

(Previous name: chromosome 22 open reading frame 35 )
(Previous symbol: C22orf35)

Explore 3 diseases affiliated with
MIAT via

MalaCards

our new
Human Malady Compendium

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, and/or ¹⁰fRNAdb)
About This Section

Subcategory (RNA class): lncRNA

Quality score for this RNA gene is 9

Aliases
Myocardial Infarction Associated Transcript (Non-Protein Coding)¹ ²		Rncr2¹
C22orf35¹ ² ⁵		Chromosome 22 Open Reading Frame 35¹
LINC00066¹ ²		Gomafu¹
NCRNA00066¹ ²		GOMAFU²
FLJ25967¹		RNCR2²

External Ids:	HGNC: 33425¹	Entrez Gene: 440823²	Ensembl: ENSG00000225783⁷	OMIM: 611082⁵

ORGUL members:	fRNAdb¹⁰:FR407597
	H-InvDB:HIT000383697
	NCBI:AB263417
	NONCODE:n377336 n377300 n377331 n377341 n377429	see all 36

Export aliases for MIAT gene to outside databases

Previous GC identifers: GC22P025372 GC22P010000

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for MIAT:

This gene encodes a non-coding RNA that may constitute a component of the nuclear matrix. Altered expression of this

locus has been reported to be associated with a susceptibility to myocardial infarction.(provided by RefSeq, Feb 2010)

Gene Wiki entry for MIAT

fRNAdb sequence ontology for MIAT:
ncRNA - An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product.

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section

RefSeq DNA sequence:

NC_000022.10 NC_018933.1 NT_011520.12

Regulatory elements:

SABiosciences Regulatory transcription factor binding sites in the MIAT gene promoter:
Bach1 GR NF-1 Bach2 GR-beta NRSF form 2 LCR-F1 C/EBPalpha GR-alpha Pax-4a
Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids

Search SABiosciences Chromatin IP Primers for MIAT

Epigenetics:

QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat MIAT

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 22q12.1 Ensembl cytogenetic band: 22q12.1 HGNC cytogenetic band: 22q12.1

MIAT Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
MIAT gene location

GeneLoc information about chromosome 22 GeneLoc Exon Structure

GeneLoc location for GC22P027042: view genomic region (about GC identifiers)

Start:	27,042,392 bp from pter	End:	27,072,441 bp from pter
Size:	30,050 bases	Orientation:	plus strand

ORGUL member locations:
Legend (see complete legend)

n377331
n377427
n377332
n377333
n377334
n377335
n377336
n378111
n377337
n344563
n377338
n377339
n377340
n378927
n377341
n377300
FR0407597
n377428
n377342
n377343
n377429
n377431
n377432
n377346
n377349
n377350
n377351
n377433
n377352
n377308
n377434
n377353
n377435
n377354
n377438
n377439
n377442

lncRNA
Full Legend

27042391 27109683 27176974 chr22

(According to ¹UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to ²PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB: --

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section

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About This Section

Interactions:

Search SABiosciences Gene Network Central^TM Interacting Genes and Proteins Networks for MIAT

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section

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(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
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About This Section

Unigene Cluster for MIAT:

Myocardial infarction associated transcript (non-protein coding)

Hs.517502 [show with all ESTs]

Unigene Representative Sequence: NR_003491

18/21 Ensembl transcripts including schematic representations, and UCSC links where relevant (see all 21):

ENST00000421867(lincRNA) ENST00000418918(lincRNA) ENST00000440347(lincRNA) ENST00000450203(lincRNA) ENST00000430483(lincRNA)

ENST00000439738(lincRNA) ENST00000422403(lincRNA) ENST00000436238(lincRNA) ENST00000425476(lincRNA) ENST00000455640(lincRNA)

ENST00000451141(lincRNA) ENST00000452429(lincRNA) ENST00000423278(lincRNA)(uc003ada.2) ENST00000413665(lincRNA)

ENST00000421151(lincRNA)(uc003adc.2 uc003add.2) ENST00000456129(lincRNA) ENST00000430080(lincRNA)(uc003adb.2)

ENST00000458302(lincRNA)

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Additional cDNA sequence:

AB263414.1 AB263415.1 AB263416.1 AB263417.1 AK095686.1 AK098753.1 AK098833.1 AK127256.1

AL110216.2 NR_003491.2 NR_033319.1 NR_033320.1 NR_033321.1

24/28 DOTS entries (see all 28):

DT.120629076 DT.212019 DT.100829653 DT.112393 DT.100788204 DT.100021397 DT.100788203 DT.100758484

DT.100833141 DT.100839565 DT.212018 DT.120629148 DT.99954426 DT.405600 DT.120629078 DT.120629169

DT.40207210 DT.40316032 DT.91977375 DT.100659034 DT.100659361 DT.100769994 DT.120629046 DT.120629053

24/274 AceView cDNA sequences (see all 274):

BM728429 AI816443 CD107330 BQ027417 BX463473 CD723627 AI347717 AI929474

CR596668 BM685297 AW163667 Z45264 H55685 BM722995 H55143 BE503635

AI681362 BU676415 AI879565 BU584655 AW161982 BU584611 BM709811 AI684406

GeneLoc Exon Structure

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

Expression evidence for MIAT:H-invDB

MIAT expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: AATGTAGCTG

About this image

MIAT expression in embryonic tissues and stem cells

Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine About this table

1 LifeMap In Vivo Development Anatomical Compartment/Cell

Tissue

Anatomical Compartment

Cell

Category (developmental path)

Gut Tube

Foregut

Foregut Endoderm Cells

Endoderm

Expression:

Positive

Negative

Selective marker

Experimental details:

Curated

Microarrays

In-situ hybridization

Stem Cell Differentiation: 8 LifeMap Cells

Name

Category

PureStem™ mesenchymal Progenitor SK11 (Embryonic Progenitor Cell)

Adipose, Bone, Cartilage

PureStem™ mesenchymal progenitor SM30 (Embryonic Progenitor Cell)

Adipose, Bone, Cartilage

PureStem™ mesenchymal progenitor 7SMOO32 (Embryonic Progenitor Cell)

Adipose, Bone, Cartilage

PureStem™ mesenchymal progenitor 7PEND24 (Embryonic Progenitor Cell)

Cartilage, Neural Crest

PureStem™ progenitor EN7 (Embryonic Progenitor Cell)

PureStem™ progenitor SM22 (Embryonic Progenitor Cell)

CyT49 (Embryonic Stem Cell)

Early Embryo, Inner Cell Mass

Line H9 (WA09) (Embryonic Stem Cell)

Early Embryo, Inner Cell Mass

Genevestigator expression for MIAT

SOURCE GeneReport for Unigene cluster: Hs.517502

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In Situ
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(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of human and mouse.

Orthologs for MIAT gene from 1 species (see representative species ) About this table

Organism	Taxonomic classification	Gene	Description	Human Similarity	Orthology Type	Details
mouse (Mus musculus)	Mammalia	Miat⁵	myocardial infarction associated transcript (non-protein more	--		5 (54.59 cM) 112213228

ENSEMBL Gene Tree for MIAT (if available)
TreeFam Gene Tree for MIAT (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
About This Section

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

SNP ID	Valid	Clinical significance	Chr 22 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs181518447^1,2		--	27051561(+)	`GGACAA/GGTAAC`	4	--	us2k¹		0	--	--	--	--
rs185221452^1,2		--	27051619(+)	`TGGGCA/GGAACT`	4	--	us2k¹		0	--	--	--	--
rs189574847^1,2		--	27051661(+)	`AGGTCA/GCTGGA`	4	--	us2k¹		0	--	--	--	--
rs181900816^1,2		--	27051821(+)	`TTTTGC/TATTTT`	4	--	us2k¹		0	--	--	--	--
rs185350168^1,2		--	27051844(+)	`GGTTTC/TGCTTT`	4	--	us2k¹		0	--	--	--	--
rs189668162^1,2		--	27051932(+)	`CAGGCA/GTGAGC`	4	--	us2k¹		0	--	--	--	--
rs181481984^1,2		--	27052190(+)	`GGCTGG/TTCTCG`	4	--	us2k¹		0	--	--	--	--
rs5761663^1,2	C,A,	--	27052334(+)	`CCCGGG/CCTAGA`	4	--	us2k¹		5		NA CSA WA EA	361
rs56371714^1,2		--	27052449(+)	`ACACCC/TGGCTA`	4	--	us2k¹		0	--	--	--	--
rs141031836^1,2		--	27052450(+)	`CACCCA/GGCTAA`	4	--	us2k¹		0	--	--	--	--

HapMap Linkage Disequilibrium report for MIAT (27042392 - 27072441 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 1 variation for MIAT
1 Indel: 40497
Human Gene Mutation Database (HGMD): MIAT

SABiosciences Cancer Mutation PCR Assays

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

MIAT for disorders           About GeneDecksing

OMIM gene information: 611082
3 diseases for MIAT:    About MalaCards

myocardial infarction myocardial infarction susceptibility neuronitis

Export disorders for MIAT gene to outside databases

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
About This Section

PubMed articles for MIAT gene integrated from 9 sources:
(articles sorted by number of sources associating them with MIAT)

Utopia: connect your pdf to the dynamic
world of online information

The mRNA-like noncoding RNA Gomafu constitutes a nove l nuclear domain in a subset of neurons. (PubMed id 17623775)^{1, 3} Sone M....Nakagawa S. (2007)
Identification of a novel non-coding RNA, MIAT, that confers risk of myocardial infarction. (PubMed id 17066261)^{1, 3} Ishii N....Tanaka T. (2006)
Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)¹ Kimura K.... Sugano S. (2006)
Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)¹ Ota T.... Sugano S. (2004)
Normalization and subtraction: two approaches to facilitate gene discovery. (PubMed id 8889548)¹ Bonaldo M.F.... Soares M.B. (1996)
(PubMed id 15103394)¹⁰
(PubMed id 18089548)¹⁰

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section

Entrez Gene: 440823	HGNC: 33425	AceView: LOC388889	Ensembl:ENSG00000225783	euGenes: HUgn440823
ECgene: MIAT	H-InvDB: MIAT

(According to HUGE)
About This Section

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Name	Description
PharmGKB entry for MIAT	Pharmacogenomics, SNPs, Pathways

Intellectual Property for MIAT gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from LifeMap Sciences, Inc.)

About This Section

Patent Information for MIAT gene:
Search GeneIP for patents involving MIAT

GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search

(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
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MIAT Gene

myocardial infarction associated transcript (non-protein...

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for MIAT gene

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for MIAT gene

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for MIAT gene

Proteins
for MIAT gene

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Families
for MIAT gene

Function
for MIAT gene

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for MIAT gene

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for MIAT gene

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for MIAT gene

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for MIAT gene

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for MIAT gene

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for MIAT gene

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Export list of displayed genes

MIAT Gene

myocardial infarction associated transcript (non-protein...

Aliasesfor MIAT gene

Summariesfor MIAT gene

Genomic Viewsfor MIAT gene

Proteinsfor MIAT gene

Protein Domains /Familiesfor MIAT gene

Functionfor MIAT gene

Pathways & Interactionsfor MIAT gene

Drugs & Compoundsfor MIAT gene

Transcriptsfor MIAT gene

Expression for MIAT gene

Orthologsfor MIAT gene

Paralogsfor MIAT gene

Genomic Variantsfor MIAT gene

Disorders / Diseasesfor MIAT gene

Publicationsfor MIAT gene

External Searches for MIAT gene

Genome Databases showing MIAT gene

Other Databases showing MIAT gene

Specialized Databases showing MIAT gene

Intellectual Propertyfor MIAT gene

Productsfor MIAT gene

View Random Gene

Aliases
for MIAT gene

Summaries
for MIAT gene

Genomic Views
for MIAT gene

Proteins
for MIAT gene

Protein Domains /
Families
for MIAT gene

Function
for MIAT gene

Pathways & Interactions
for MIAT gene

Drugs & Compounds
for MIAT gene

Transcripts
for MIAT gene

Expression
for MIAT gene

Orthologs
for MIAT gene

Paralogs
for MIAT gene

Genomic Variants
for MIAT gene

Disorders / Diseases
for MIAT gene

Publications
for MIAT gene

Intellectual Property
for MIAT gene

Products
for MIAT gene