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MIA Gene

protein-coding GIFtS: 56

GC19P045978

melanoma inhibitory activity
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc , and/or ⁷Ensembl, ⁸miRBase)
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Aliases
CD-RAP ^¹, ²

Descriptions
melanoma inhibitory activity ^², ³

External Ids
HGNC: 7076¹
Entrez Gene: 8190²
UniProtKB: Q16674³
Ensembl: ENSG00000213054⁷

Search outside databases for aliases for MIA gene

Previous GC identifers: GC19P041920 GC19P041673 GC19P045958 GC19P045975 GC19P045976

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: MIA_HUMAN, Q16674

Function: Elicits growth inhibition on melanoma cells in vitro as well as some other

neuroectodermal tumors, including gliomas

Gene Wiki entry for MIA (Melanoma_inhibitory_activity)

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:

UCSC Golden Path with GeneCards custom track

Transcription factor binding sites upstream to the MIA gene

Entrez Gene cytogenetic band: 19q13.32-q13.33 Ensembl cytogenetic band: 19q13.2 HGNC cytogenetic band: 19q13.32-q13.33

MIA Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 19 GeneLoc Exon Structure

GeneLoc location for GC19P045978: (about GC identifiers)

Start:	45,973,140 bp from pter
End:	45,975,235 bp from pter
Size:	2,096 bases
Orientation:	plus strand

RefSeq DNA sequence:

NC_000019.8 NT_011109.15

(According to ¹UniProtKB, and/or Ensembl, Phosphorylation sites according to ²Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
About This Section

UniProtKB/Swiss-Prot: MIA_HUMAN, Q16674 (See protein sequence)

Recommended Name: Melanoma-derived growth regulatory protein precursor

Size: 131 amino acids; 14509 Da

Subcellular location: Secreted

PDB structures from and Proteopedia :

1HJD (3D)

1I1J (3D)

1K0X (3D)

Post-translational modifications:

May possess two intramolecular disulfide bonds¹

REFSEQ proteins: NP_006524.1

ENSEMBL proteins:

ENSP00000263369

Human Recombinant Proteins

	Browse Drug Discovery Central at Invitrogen for human recombinant proteins
	Browse Purified and Recombinant Proteins at Millipore
	Browse Human Recombinant Proteins at Sigma-Aldrich
	Browse R&D Systems for human recombinant proteins
	Browse recombinant and purified proteins available from Enzo Life Sciences
	Recombinant Proteins from Abcam (Melanoma Inhibitory Activity)
	Human Recombinant Proteins from Abnova (MIA)

Browse Origene for full length recombinant human proteins expressed in human HEK293 cells

2 Gene Ontology (GO) cellular component terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005576	extracellular region	IEA	--
GO:0005615	extracellular space	TAS	7923218

About this table

Antibodies for MIA:

	Browse Antibodies Central at Invitrogen
	Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
	Browse Antibodies at Sigma-Aldrich
	R&D Systems Antibodies for MIA
	Antibodies from Abcam (Melanoma Inhibitory Activity), each with their Abpromise^SM
	Monoclonal and Polyclonal Antibodies from Abnova (MIA)
	Novus Biologicals Antibody for MIA

Assays for MIA:

	Browse Invitrogen for biochemical assays
	Browse Kits and Assays available from Millipore
	Browse R&D Systems for biochemical assays
	Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

Graphical View of Domain Structure for InterPro Entry Q16674

ProtoNet protein and cluster: Q16674

1 Blocks protein family: IPB001452 SH3 domain signature

UniProtKB/Swiss-Prot: MIA_HUMAN, Q16674

Similarity: Belongs to the MIA/OTOR family

Similarity: Contains 1 SH3 domain

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section

Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (MIA)
		Browse for Gene Knock-down Tools from Millipore
		Browse Abnova for Chimera RNAi Products

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_006533

Applied Biosystems Silencer® siRNAs for MIA

Sigma-Aldrich siRNA for MIA

Sigma-Aldrich shRNA for MIA

Explore Sigma-Aldrich super-pooled esiRNAs

Clones:		Invitrogen Clones for MIA
		Browse Clones for the Expression of Recombinant Proteins Available from Millipore

OriGene GFP tagged cDNA clone in CMV expression vector: NM_006533
Myc/DDK tagged cDNA clone in CMV expression vector: NM_006533
untagged cDNA clone in CMV expression vector: NM_006533

Primers:

Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers

OriGene genome-wide validated SYBR primer pairs: NM_006533

UniProtKB/Swiss-Prot: MIA_HUMAN, Q16674

Function: Elicits growth inhibition on melanoma cells in vitro as well as some other

neuroectodermal tumors, including gliomas

Genatlas biochemistry entry for MIA:

melanoma inhibitory activity,11kDa,regulator of cell growth (see TSG19A)

3 MGI mutant phenotypes (inferred from 1 allele) (MGI details for Mia1):

endocrine/exocrine gland

skeleton

skin/coat/nails

1 Gene Ontology (GO) molecular function term (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0008083	growth factor activity	IEA	--

About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to ¹UniProtKB, ²MINT, and/or ³STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section

Gene Network Central^TM Interacting Genes and Proteins Network for MIA

3 Gene Ontology (GO) biological process terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0007160	cell-matrix adhesion	IEA	--
GO:0008283	cell proliferation	TAS	7923218
GO:0030198	extracellular matrix organization	IEA	--

About this table

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Browse drugs & compounds from Enzo Life Sciences

Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for MIA

(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (MIA)
		Browse for Gene Knock-down Tools from Millipore
		Browse Abnova for Chimera RNAi Products

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_006533

Sigma-Aldrich siRNA for MIA

Sigma-Aldrich shRNA for MIA

Explore Sigma-Aldrich super-pooled esiRNAs

Applied Biosystems Silencer® siRNAs:

NM_006533

REFSEQ mRNAs for MIA gene:

NM_006533.2

Applied Biosystems TaqMan ® Gene Expression Assays:

NM_006533

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_006533
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_006533
                                 untagged cDNA clone in CMV expression vector: NM_006533

Additional cDNA sequence:

AK302147.1 BC005910.1 BT007044.1 CR541648.1 X75450.1

6 DOTS entries:

DT.215114 DT.100792664 DT.121503341 DT.121503423 DT.121503385 DT.91750613

24/186 AceView cDNA sequences (see all 186 ):

AI561007 BE674995 AI270301 AI493506 CA435622 CD673201 AF498935 AW793349

BC046927 AI312115 BQ279120 BU150091 BQ927637 BQ686015 BU538102 BM856478

CB961988 AI934691 BQ279167 AI086169 BQ957483 AK024845 BQ935941 AA164359

highest scoring ESTs for MIA:

AA035545 AA062943 AA282143 AA627297 AI620915 AI807731 BC005910 BF439750 BM791767 BM856478

Unigene Cluster for MIA:

Melanoma inhibitory activity

Hs.646364 [show with all ESTs]

Unigene Representative Sequence: BG765502

GeneLoc Exon Structure

1 Ensembl transcript including schematic representation:

ENST00000263369

(Experimental results according to ¹GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to ²GeneAnnot , ³GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
About This Section

MIA expression in normal and diseased human tissues

Applied Biosystems TaqMan ® Gene Expression Assays for MIA

¹ / ² / ³

3 probe-sets matching MIA gene

Affymetrix probe-set	Array	# genes	Sensitivity	Specificity	Correlation	Length	Gb_Accession	Consensus	Uniqueness	Score	Rank
Affymetrix probe-set	Array	GeneAnnot data			GeneNote data		GeneTide data
39271_at²^{, 3}	U95-A	1	1.00	1.00	1.00	1.00	AA461365	0.60	0.50	0.55	1
206560_s_at²^{, 3}	U133-A	1	1.00	1.00	--	--	NM_006533	0.60	0.83	0.73	1
206560_s_at²	U133Plus2	1	1.00	1.00	--	--	--	--	--	--	--

GeneDecks MIA for binary patterns associated with the probe-sets selected above

About GeneDecksing

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Data from

(Publications) and GNF BioGPS
About these images
About these images

CGAP SAGE TAG: GCCCCCGACT

SOURCE GeneReport for Unigene cluster: Hs.646364
Expression variation in blood from EXPOLDB for MIA
UniProtKB/Swiss-Prot: MIA_HUMAN, Q16674
Tissue specificity: All malignant melanoma cell lines tested and infrequently in glioma cell lines

(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD and/or ⁵MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section

Orthologs for MIA gene from 5/6 species (see all 6 )

Organism	Gene	Locus	Description	Human Similarity	NCBI accessions
dog (Canis familiaris)	MIA¹	--	melanoma inhibitory activity	89.06(n) 87.79(a)	484496 XM_541610.2 XP_541610.2
chimpanzee (Pan troglodytes)	MIA¹	--	melanoma inhibitory activity	99.49(n) 100(a)	456048 XM_512675.2 XP_512675.1
cow (Bos taurus)	MIA¹	--	melanoma inhibitory activity	87.69(n) 86.15(a)	280857 NM_173936.2 NP_776361.1
rat (Rattus norvegicus)	Mia¹	--	melanoma inhibitory activity	83.59(n) 83.85(a)	81510 NM_030852.1 NP_110479.1
mouse (Mus musculus)	Mia1^{1, 5}	7 (1.90 cM)⁵	melanoma inhibitory activity 1^{1, 5}	84.1(n)¹ 80.77(a)¹	12587¹ NM_019394.2¹ NP_062267.1¹ AK135151⁵ AW047492⁵ (see all 11)

About this table Species with no ortholog for MIA

ENSEMBL Gene Tree for MIA

(Paralogs according to ¹HomoloGene
and ²Ensembl, Pseudogenes according to ³Pseudogene.org)
About This Section

Paralogs for MIA gene

MIA2² OTOR²

(According to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section

10/18 NCBI SNPs in MIA are shown (see all 18 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay) (see all 28)

AB	SNP ID	Valid	Chr 19 pos	Sequence	Recs	AA Chg	Type	More	Recs	Allele freq	Pop	Total sample	More
AB	Genomic Data				Transcription Data				Allele Frequencies
				--	--	--		--	--				--
	rs2233154^1,2	C,F,H	45973186(+)	`GGGGAC/TAAGAC`	1	--	ut5¹		5		EU EA WA	1892
	rs2233153^1,2	C,F,O	45972946(+)	`CAGCGG/CAGGAG`	1	--	ng5¹		3		NA	142
	rs2233152^1,2	C,F,H	45972856(+)	`AAAGGG/ACTGCC`	1	--	ng5¹		12		EU EA WA	1256
	rs2233151^1,2	H	45972758(+)	`GTGAAG/AAGGAA`	1	--	ng5¹		4		EU EA WA	404
	rs2233155^1,2	C	45973206(+)	`AAGTTC/TCCTTG`	1	--	ut5¹		0	--	--	--	--
	rs2233156^1,2	A,C,F,H	45973540(+)	`GCCCCC/TGACTG`	1	P/P	syn¹		8		NA EU EA WA	590
--	rs34935628^1,2	--	45973354(+)	`TGTCA-/GGGGGT`	1	R/E	fra¹		0	--	--	--	--
--	rs2233150^1,2	--	45972676(+)	`ttgttC/Tccatt`	1	--	ng5¹		0	--	--	--	--
--	rs2233149^1,2	--	45972387(+)	`ataatG/Ttaaaa`	1	--	ng5¹		0	--	--	--	--
--	rs35547763^1,2	--	45971179(+)	`GTCTC-/AAAAAA`	1	--	ng5¹		0	--	--	--	--

About this table

HapMap Linkage Disequilibrium images for MIA (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

OMIM: 601340

(Possibly Related Articles in Doctor's Guide)
About This Section

Trio of Ills Causes Synergistic Increase in Mortality Among Dialysis Patients: Presented at ASN

(in PubMed. Associations of this gene to articles via ¹Novoseek, ²HGNC, ³Entrez Gene, ⁴UniProtKB/Swiss-Prot, ⁵UniProtKB/TrEMBL, ⁶GAD, and/or ⁷PharmGKB)
About This Section

10/26 PubMed articles for MIA gene (see all 26 ):

Cloning of a novel malignant melanoma-derived growth-regulatory protein, MIA. (PubMed id 7923218)^{2, 3, 4} Blesch A.... Bogdahn U. (1994)
Structure and promoter analysis of the gene encoding the human melanoma-inhibiting protein MIA. (PubMed id 8550608)^{1, 3, 4} Bosserhoff A.-K.... Buettner R. (1996)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{3, 4} Gerhard D.S....Malek J. (2004)
Signal peptide prediction based on analysis of experimentally verified cleavage sites. (PubMed id 15340161)^{3, 4} Zhang Z. and Henzel W.J. (2004)
Structure of melanoma inhibitory activity protein, a member of a recently identified family of secreted proteins. (PubMed id 11331761)^{3, 4} Lougheed J.C.... Handel T.M. (2001)
Assignment of the human melanoma inhibitory activity gene (MIA) to 19q13.32-q13.33 by fluorescence in situ hybridization (FISH). (PubMed id 8661134)^{2, 3} Koehler M.R....Schmid M. (1996)
Melanoma-inhibiting activity (MIA/CD-RAP) is expressed in a variety of malignant tumors of mainly neuroectodermal origin. (PubMed id 12014625)^{1, 3} Hau P....Bogdahn U. (2002)
High mobility group box-1-inducible melanoma inhibitory activity is associated with nodal metastasis and lymphangiogenesis in oral squamous cell carcinoma. (PubMed id 18616526)³ Sasahira T....Kuniyasu H. (2008)
A novel tumor-promoting function residing in the 5' non-coding region of vascular endothelial growth factor mRNA. (PubMed id 18494554)³ Masuda K....Rokutan K. (2008)
Multimarker real-time reverse transcription-PCR for quantitative detection of melanoma-associated antigens: a novel possible staging method. (PubMed id 18181974)³ Arenberger P....Kremen J. (2008)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
About This Section

Entrez Gene: 8190	HGNC: 7076	AceView: MIAandRAB4B	Ensembl:ENSG00000213054	euGenes: HUgn8190
ECgene: MIA	H-InvDB: MIA

(According to HUGE)
About This Section

(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Name	Description
ATLAS Chromosomes in Cancer entry for MIA	Genetics and Cytogenetics in Oncology and Haematology

Licensable Technologies for MIA
(Available from WIS Yeda, Salk, Tufts)

About This Section

(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
About This Section

Products for MIA:

TaqMan ® Gene Expression Assays

TaqMan ® Genotyping Assays

Free SNP selection tool

Invitrogen iPath Pathways	Invitrogen BLOCK-iT™ RNAi
Invitrogen Antibodies	Invitrogen Assays
Invitrogen Clones	Invitrogen Q-PCR Products
Invitrogen Human Recombinant Kinases	Invitrogen Custom Antibody and Peptide Service
Invitrogen Proteins / Assays / Screening Services	Search Invitrogen catalog for MIA-related products

	Millipore Custom Antibody & Bulk Services
	Millipore Preclinical / Clinical Development Services
	Millipore Immunoassay Services
	Millipore Target Screening & Profiling Services

	Predesigned and custom siRNAs for MIA		Browse antibodies at Sigma-Aldrich
	Explore super-pooled esiRNAs		Browse proteins at Sigma-Aldrich
	Lentivirus-delivered shRNAs for MIA		Browse small molecules at Sigma-Aldrich
	"Your Favorite Gene" Pathways		feedback

	Antibodies		Primer Pairs
	Cell Culture Products		ELISAs
	Flow Cytometry Kits		Protease Activity Assays & Reagents
	Cell Selection/Detection Kits & Reagents		ELISA/Assay Development Kits & Reagents
	Multiplex/Array Assay Kits & Reagents		ELISpot Kits & Development Modules
	Recombinant & Natural Proteins

	Recombinant Proteins (MIA)
	Antibodies (MIA)
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	Custom Service for Rabbit Pab from Full-length Protein

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	Antibodies (Melanoma Inhibitory Activity)

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Search Tocris compounds for MIA

Search www.enzolifesicences.com for proteins, assays, substrates, inhibitors & antibodies

Antibodies for MIA

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MIA Gene

protein-coding GIFtS: 56

Aliases &
Descriptions
for MIA

Summaries
for MIA

Genomic Location
for MIA

Proteins
for MIA

Protein Domains/
Families
for MIA

Gene Function
for MIA

Pathways & Interactions
for MIA

Drugs & Compounds
for MIA

Transcripts
for MIA

Expression
for MIA

Orthologs
for MIA

Paralogs
for MIA

SNPs/Variants
for MIA

Disorders & Mutations
for MIA

Medical News
for MIA

Publications
for MIA

Search for MIA

Genome Databases showing MIA

Other Databases showing MIA

Specialized Databases showing MIA

Licensable Technologies
for MIA

Services
for MIA

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

MIA Gene

protein-coding GIFtS: 56

Aliases & Descriptionsfor MIA

Summariesfor MIA

Genomic Locationfor MIA

Proteinsfor MIA

Protein Domains/Familiesfor MIA

Gene Functionfor MIA

Pathways & Interactionsfor MIA

Drugs & Compoundsfor MIA

Transcriptsfor MIA

Expression for MIA

Orthologsfor MIA

Paralogsfor MIA

SNPs/Variantsfor MIA

Disorders & Mutationsfor MIA

Medical Newsfor MIA

Publicationsfor MIA

Search for MIA

Genome Databases showing MIA

Other Databases showing MIA

Specialized Databases showing MIA

Licensable Technologiesfor MIA

Servicesfor MIA

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Aliases &
Descriptions
for MIA

Summaries
for MIA

Genomic Location
for MIA

Proteins
for MIA

Protein Domains/
Families
for MIA

Gene Function
for MIA

Pathways & Interactions
for MIA

Drugs & Compounds
for MIA

Transcripts
for MIA

Expression
for MIA

Orthologs
for MIA

Paralogs
for MIA

SNPs/Variants
for MIA

Disorders & Mutations
for MIA

Medical News
for MIA

Publications
for MIA

Licensable Technologies
for MIA

Services
for MIA