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Aliases & Descriptions for KITLG
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases DKFZp686F2250 2 KL-1 1 , 2 Kitl 1 , 2 MGF 2 , 3 , 5 SCF 1 , 2 , 3 , 5 SF 1 , 2 , 5 SHEP7 2 , 5
Descriptions C-kit ligand 3 KIT ligand 2 Mast cell growth factor 2 , 3 Stem cell factor 2 , 3 steel factor 2
Search outside databases for aliases for KITLG genePrevious GC identifers: GC12M088158 GC12M089338 GC12M088823
Summaries for KITLG (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for KITLG : This gene encodes the ligand of the tyrosine-kinase receptor encoded by the KIT locus. This ligandis a pleiotropic factor that acts in utero in germ cell and neural cell development, andhematopoiesis, all believed to reflect a role in cell migration. In adults, it functionspleiotropically, while mostly noted for its continued requirement in hematopoiesis. Two transcriptvariants encoding different isoforms have been found for this gene. [provided by RefSeq] UniProtKB/Swiss-Prot: SCF_HUMAN, P21583 Function : Stimulates the proliferation of mast cells. Able to augment the proliferation of bothmyeloid and lymphoid hematopoietic progenitors in bone marrow culture. Mediates also cell-celladhesion. Acts synergistically with other cytokines, probably interleukins
Gene Wiki entry for KITLG (Stem_cell_factor)
Genomic Location for KITLG
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the KITLG gene Entrez Gene cytogenetic band: 12q22 Ensembl cytogenetic band: 12q21.32 HGNC cytogenetic band: 12q22 KITLG Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 12 GeneLoc Exon Structure
GeneLoc location for GC12M087393:
(about GC identifiers )
Start:
87,410,697 bp from pter
End:
87,498,369 bp from pter
Size:
87,673 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000012.10 NT_019546.15 Proteins for KITLG
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: SCF_HUMAN, P21583 (See
protein sequence )Recommended Name: Kit ligand precursor Size : 273 amino acids; 30899 Da
Subunit : Homodimer, non-covalently linked (Probable)
Subcellular location : Isoform 1: Cell membrane; Single-pass type I membrane protein (Bysimilarity). Secreted (By similarity). Note=Also exists as a secreted soluble form (isoform 1only) (By similarity)
Subcellular location : Isoform 2: Cell membrane; Single-pass type I membrane protein (Bysimilarity). Cytoplasm, cytoskeleton (By similarity)
Developmental stage : Acts in the early stages of hematopoiesis
PDB structures from and Proteopedia : 1EXZ (3D)
 1SCF (3D)
 2E9W (3D)
 
Secondary accessions : A0AV09 A8K2Q4 Q16487 Q68DZ2 Q7M4N8 Q9UQK7Alternative splicing : 3 isoforms : P21583-1 P21583-2 P21583-3
Post-translational modifications:
A soluble form is produced by proteolytic processing of isoform 1 in the extracellular domain1
Found in two differentially glycosylated forms, LMW-SCF and HMW-SCF. LMW-SCF is fullyN-glycosylated at Asn-145, partially N-glycosylated at Asn-90, O-glycosylated at Ser-167, Thr-168and Thr-180, and not glycosylated at Asn-97 or Asn-118. HMW-SCF is N-glycosylated at Asn-118,Asn-90 and Asn-145, O-glycosylated at Ser-167, Thr-168 and Thr-180, and not glycosylated at Asn-971
REFSEQ proteins (2 alternative transcripts):
NP_000890.1 NP_003985.2 ENSEMBL proteins: ENSP00000367796 ENSP00000349630 ENSP00000054216 ENSP00000228280 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 5/6 Gene Ontology (GO) cellular component terms (links to tree view) (see all 6
):
About this table Antibodies for KITLG: Assays for KITLG:
Protein
Domains/ Families for KITLG(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P21583 ProtoNet protein and cluster: P21583
1 Blocks protein family : IPB003452 Stem cell factor UniProtKB/Swiss-Prot: SCF_HUMAN, P21583 Similarity : Belongs to the SCF family
Gene Function for KITLG
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_003994 Applied Biosystems Silencer ® siRNAs for KITLG Sigma-Aldrich siRNA and siRNA Panels for KITLG Sigma-Aldrich shRNA for KITLG Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_000899                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_000899                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_000899  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_000899 UniProtKB/Swiss-Prot: SCF_HUMAN, P21583 Function : Stimulates the proliferation of mast cells. Able to augment the proliferation of bothmyeloid and lymphoid hematopoietic progenitors in bone marrow culture. Mediates also cell-celladhesion. Acts synergistically with other cytokines, probably interleukins
15/22 MGI mutant phenotypes (inferred from 48 alleles ) (MGI details for Kitl) (see all 22
):3 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for KITLG
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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2 Sigma-Aldrich "Your Favorite Gene" Pathways for KITLG (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for KITLG 5/84 Interacting proteins for KITLG (ENSP00000228280 3 P21583 1 ) via UniProtKB, MINT, and/or STRING (see all 84
)About this table 5/12 Gene Ontology (GO) biological process terms (links to tree view) (see all 12
):
GO ID Qualified GO term Evidence PubMed IDs GO:0001755 neural crest cell migration
IEA -- GO:0002763 positive regulation of myeloid leukocyte differentiation
IEA -- GO:0007155 cell adhesion
IEA -- GO:0007165 signal transduction
TAS 2208279 GO:0008284 positive regulation of cell proliferation
IEA --
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Drugs & Compounds for KITLG (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for KITLG 10/50 Novoseek chemical compound relationships for KITLG gene (see all 50
)
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
tyrosine
70.70
321
9444944 (4), 10921922 (3), 1721591 (3), 7526158 (3) (see all 99 )
pixy321
67.08
13
1383918 (6), 9922079 (1), 8692093 (1), 12881174 (1) (see all 6 )
pkh 2
61.42
5
8807087 (1), 9573006 (1), 7536490 (1)
pbhp
58.06
4
7682456 (2)
daniplestim
58.06
1
10781904 (1)
gp 130
54.53
21
9389693 (2), 8642288 (2), 7535932 (1), 8547494 (1) (see all 13 )
h 121
53.59
3
9750020 (2), 8609154 (1)
pyronin y
47.50
1
12461294 (1)
toluidine
45.94
7
10432289 (1), 11564169 (1), 7524750 (1), 7524746 (1) (see all 5 )
rhodamine 123
41.36
5
8704205 (1), 10084251 (1), 10395370 (1)
About this table 1 PharmGKB drug compound relationship for KITLG gene
Drug compound
PharmGKB Relations
PubMed IDs for articles supporting these relationships
glucocorticoids FA  14563684
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Transcripts for KITLG(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_003994 Sigma-Aldrich siRNA and siRNA Panels for KITLG Sigma-Aldrich shRNA for KITLG Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_000899 NM_003994
REFSEQ mRNAs for KITLG gene (2 alternative transcripts): NM_000899.3 NM_003994.4
Applied Biosystems TaqMan ® Gene Expression Assays: NM_000899 NM_003994
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_000899                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_000899                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_000899  
Additional cDNA sequence: AF119835.1 AF400436.1 AF400437.1 AK025245.1 AK055903.1 AK127865.1 AK290319.1 AK293002.1 BC069733.1 BC069783.1 BC069797.1 BC074725.2 BC126166.1 BC143899.1 CR613468.1 CR749222.1 M59964.1 S42571.1 S45995.1
8 DOTS entries : DT.405991 DT.211805 DT.86840824 DT.100707042 DT.421705 DT.121155851 DT.121155857 DT.86849774
24/95 AceView cDNA sequences (see all 95
):CD617798 BC069783 BC074725 CB243467 CN482622 NM_003994 BF448859 BF115172 CR613468 CD617800 AL597797 BQ024940 S42571 AI583137 T28310 CD617804 NM_000899 BM564582 AA384587 AW131339 Z39030 BC069733 BQ016775 AF400437
highest scoring ESTs for KITLG :M59964 BX473946 BX474960 BX504658 AF119835 AF400436 AF400437 BC069733 BC069783 BC069797
Unigene Cluster for KITLG: KIT ligand Hs.1048 [show with all ESTs ] Unigene Representative Sequence: NM_000899 GeneLoc Exon Structure 5 Alternative Splicing Database (ASD) splice patterns (SP) for KITLG ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13a · 13b SP1 :                               SP2 :   -       -                       SP3 :   -   -   -   -   -   -   -   -   -             SP4 :         -                       SP5 :   -                            
About this scheme ECgene alternative splicing isoforms for KITLG 4 Ensembl transcripts including schematic representations : ENST00000378535
ENST00000357116
ENST00000347404
ENST00000228280
Expression for KITLG
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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KITLG expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for KITLG 1 / 2 / 3
9 probe-sets matching KITLG gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: ATATATACATSOURCE GeneReport for Unigene cluster: Hs.1048 Expression variation in blood from EXPOLDB for KITLG
Orthologs for KITLG
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for KITLG gene from 5/8 species (see all 8
)
About this table Species with no ortholog for KITLG ENSEMBL Gene Tree for KITLG Paralogs for KITLG (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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SNPs/Variants for KITLG (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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UniProtKB/Swiss-Prot: SCF_HUMAN, P21583 Polymorphism : Genetic variations in KITLG are associated with variation in skin/hair/eyepigmentation type 7 (SHEP7) [MIM:611664]. Hair, eye and skin pigmentation are among the mostvisible examples of human phenotypic variation, with a broad normal range that is subject tosubstantial geographic stratification. In the case of skin, individuals tend to have lighterpigmentation with increasing distance from the equator. By contrast, the majority of variation inhuman eye and hair color is found among individuals of European ancestry, with most other humanpopulations fixed for brown eyes and black hair
HapMap Linkage Disequilibrium images for KITLG (up to first 250kb)
Disorders & Mutations for KITLG
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 184745 disorders : 611664
10/93 Novoseek disease relationships for KITLG gene (see all 93
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
mastocytosis
79.24
35
9584135 (5), 7547385 (2), 9609630 (1), 11231001 (1) (see all 25 )
leukemia mast cell
73.59
2
7512180 (1), 7691885 (1)
diamond-blackfan anemia
70.39
18
1370205 (4), 7544739 (3), 1718487 (2), 7691319 (2) (see all 7 )
mastocytosis systemic
67.10
6
8876560 (1), 12162685 (1), 12688351 (1), 7527672 (1) (see all 5 )
leukemia
66.25
107
8677752 (3), 7686791 (2), 7693028 (2), 7687220 (1) (see all 68 )
gastrointestinal stromal tumor
62.87
9
14686698 (1), 16127511 (1), 15743318 (1), 18602222 (1) (see all 6 )
myeloid leukemia
62.16
19
8677752 (3), 1381238 (3), 7687773 (3), 8425202 (1) (see all 12 )
myeloid leukemia chronic
58.11
16
9746786 (2), 16127511 (1), 7544854 (1), 12297464 (1) (see all 11 )
anemia aplastic
57.33
40
7532030 (3), 7522518 (2), 10027723 (2), 1378317 (2) (see all 19 )
mastocytoma
55.42
5
7547385 (2), 8809429 (1), 19397569 (1), 9371257 (1)
About this table Genetic Association Database: KITLG Human Genome Epidemiology Navigator: KITLG (5 documents)
Medical News for KITLG (Possibly Related Articles in
Doctor's Guide )
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Publications for KITLG (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/1543 PubMed articles for KITLG gene (see all 1543
): Primary structure and functional expression of rat and human stem cell factor DNAs. (PubMed id 2208279) 2, 3, 4 Martin F.H.... Zsebo K.M. (1990) Parathyroid hormone-regulated production of stem cell factor in human osteoblasts and osteoblast-like cells. (PubMed id 10049787) 1, 3, 4 Blair H.C.... Dong S.S. (1999) Stem cell factor (SCF), a novel hematopoietic growth factor and ligand for c-kit tyrosine kinase receptor, maps on human chromosome 12 between 12q14.3 and 12qter. (PubMed id 1707188) 1, 2, 3 Geissler E.N....Galli S.J. (1991) Genetic determinants of hair, eye and skin pigmentation in Europeans. (PubMed id 17952075) 3, 4 Sulem P.... Stefansson K. (2007) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 3, 4 Ota T....Sugano S. (2004) Crystal structure of human stem cell factor: implication for stem cell factor receptor dimerization and activation. (PubMed id 10884405) 3, 4 Zhang Z....Kong X.P. (2000) Structure of the active core of human stem cell factor and analysis of binding to its receptor kit. (PubMed id 10880433) 3, 4 Jiang X....Hendrickson W.A. (2000) Post-translational processing of membrane-associated recombinant human stem cell factor expressed in Chinese hamster ovary cells. (PubMed id 1381905) 3, 4 Lu H.S.... Langley K.E. (1992) Expression of two types of kit ligand mRNAs in human tumor cells. (PubMed id 1379846) 3, 4 Toyota M.... Yachi A. (1992)
Search for KITLG
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Genome Databases showing KITLG
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing KITLG
(According to HUGE )
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Specialized Databases showing KITLG (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section
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Licensable Technologies for KITLG gene: Services for KITLG (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for KITLG:
Antibodies & Assays for KITLG   (SCF)
Recombinant Proteins (SCF ) Antibodies (SCF )
Search Tocris compounds for KITLG
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009