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Aliases for MGC72080 Gene

Aliases for MGC72080 Gene

  • MGC72080 Pseudogene 3

External Ids for MGC72080 Gene

Previous GeneCards Identifiers for MGC72080 Gene

  • GC07M097243
  • GC07M097434
  • GC07M097596
  • GC07M096918
  • GC07M097600

Summaries for MGC72080 Gene

GeneCards Summary for MGC72080 Gene

MGC72080 (MGC72080 Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MGC72080 Gene

Genomics for MGC72080 Gene

Regulatory Elements for MGC72080 Gene

Enhancers for MGC72080 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07G097973 0.6 ENCODE 0.7 -1.0 -959 0.0 SP1 PKNOX1 POLR2A NFYB SP2 ZBTB33 MGC72080 OCM2
GH07G097974 0.6 ENCODE 0.7 -1.2 -1168 0.3 SP1 PKNOX1 POLR2A NFYB MAX SP2 ZBTB33 OR7E38P MGC72080 OCM2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MGC72080 on UCSC Golden Path with GeneCards custom track

Promoters for MGC72080 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000215492 226 1800 HDGF PKNOX1 CREB3L1 ARNT AGO1 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B

Genomic Location for MGC72080 Gene

Chromosome:
7
Start:
97,966,596 bp from pter
End:
97,972,326 bp from pter
Size:
5,731 bases
Orientation:
Minus strand

Genomic View for MGC72080 Gene

Genes around MGC72080 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MGC72080 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MGC72080 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MGC72080 Gene

Proteins for MGC72080 Gene

Post-translational modifications for MGC72080 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MGC72080 Gene

Domains & Families for MGC72080 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MGC72080 Gene

Function for MGC72080 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MGC72080 Gene

Localization for MGC72080 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MGC72080 Gene

Pathways & Interactions for MGC72080 Gene

SuperPathways for MGC72080 Gene

No Data Available

Interacting Proteins for MGC72080 Gene

Gene Ontology (GO) - Biological Process for MGC72080 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MGC72080 Gene

Drugs & Compounds for MGC72080 Gene

No Compound Related Data Available

Transcripts for MGC72080 Gene

mRNA/cDNA for MGC72080 Gene

Unigene Clusters for MGC72080 Gene

MGC72080 pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MGC72080 Gene

No ASD Table

Relevant External Links for MGC72080 Gene

GeneLoc Exon Structure for
MGC72080

Expression for MGC72080 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MGC72080 Gene

mRNA expression in normal human tissues for MGC72080 Gene

SOURCE GeneReport for Unigene cluster for MGC72080 Gene:

Hs.655977
genes like me logo Genes that share expression patterns with MGC72080: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MGC72080 Gene

Orthologs for MGC72080 Gene

No data available for Orthologs and Evolution for MGC72080 Gene

Paralogs for MGC72080 Gene

No data available for Paralogs for MGC72080 Gene

Variants for MGC72080 Gene

Sequence variations from dbSNP and Humsavar for MGC72080 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs1000341682 -- 97,970,519(+) GACTA(A/C)AGGCG intron-variant
rs1001666245 -- 97,967,541(+) GAAAA(A/T)AATTC intron-variant
rs1002145949 -- 97,973,772(+) TTTGC(G/T)CTGTT upstream-variant-2KB
rs1002178026 -- 97,973,142(+) CCTGC(C/G)TCTGT upstream-variant-2KB
rs1002739033 -- 97,968,785(+) ACACA(C/T)TCCTA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for MGC72080 Gene

Variant ID Type Subtype PubMed ID
esv2759546 CNV loss 17122850
esv32764 CNV loss 17666407
nsv1078596 CNV duplication 25765185
nsv428178 CNV gain 18775914
nsv970555 CNV duplication 23825009

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for MGC72080 Gene

Disorders for MGC72080 Gene

Relevant External Links for MGC72080

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MGC72080

No disorders were found for MGC72080 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MGC72080 Gene

Publications for MGC72080 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for MGC72080 Gene

Sources for MGC72080 Gene

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