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Aliases for MGC45922 Gene

Subcategory (RNA class) for MGC45922 Gene

lncRNA

Quality Score for this RNA gene is

2

Aliases for MGC45922 Gene

  • Uncharacterized LOC284365 3
  • CTD-2568A17.5 3

External Ids for MGC45922 Gene

Summaries for MGC45922 Gene

GeneCards Summary for MGC45922 Gene

MGC45922 (Uncharacterized LOC284365) is a RNA Gene, and belongs to lncRNA RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MGC45922 Gene

Genomics for MGC45922 Gene

Genomic Location for MGC45922 Gene

Start:
50,817,681 bp from pter
End:
50,818,878 bp from pter
Size:
1,198 bases
Orientation:
Plus strand

Genomic View for MGC45922 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for MGC45922 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MGC45922 Gene

Regulatory Elements for MGC45922 Gene

Proteins for MGC45922 Gene

Post-translational modifications for MGC45922 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MGC45922 Gene

Domains for MGC45922 Gene

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for MGC45922 Gene

Function for MGC45922 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for MGC45922 Gene

Localization for MGC45922 Gene

No data available for Gene Ontology (GO) - Cellular Components for MGC45922 Gene

Pathways for MGC45922 Gene

SuperPathways for MGC45922 Gene

No Data Available

Interacting Proteins for MGC45922 Gene

Gene Ontology (GO) - Biological Process for MGC45922 Gene

None

No data available for Pathways by source for MGC45922 Gene

Transcripts for MGC45922 Gene

mRNA/cDNA for MGC45922 Gene

(2) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MGC45922 Gene

Uncharacterized LOC284365:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MGC45922 Gene

ExUns: 1 ^ 2a · 2b ^ 3a · 3b · 3c
SP1:
SP2: -

Relevant External Links for MGC45922 Gene

GeneLoc Exon Structure for
MGC45922

Expression for MGC45922 Gene

mRNA expression in normal human tissues for MGC45922 Gene

mRNA differential expression in normal tissues according to GTEx for MGC45922 Gene

This gene is overexpressed in Testis (13.0).

SOURCE GeneReport for Unigene cluster for MGC45922 Gene Hs.161397

genes like me logo Genes that share expressions with MGC45922: view

Orthologs for MGC45922 Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for MGC45922 Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia Gm10109 16
Species with no ortholog for MGC45922:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for MGC45922 Gene

ENSEMBL:
Gene Tree for MGC45922 (if available)
TreeFam:
Gene Tree for MGC45922 (if available)

Paralogs for MGC45922 Gene

No data available for Paralogs for MGC45922 Gene

Variants for MGC45922 Gene

Sequence variations from dbSNP and Humsavar for MGC45922 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs266117 -- 50,816,261(+) AGGTA(A/T)ACCTC upstream-variant-2KB
rs266118 -- 50,816,702(+) TGGCT(C/G)ACGCT upstream-variant-2KB
rs2411334 -- 50,818,557(-) GGAGG(C/T)ACTGT nc-transcript-variant
rs2560936 -- 50,816,943(+) AGAGC(A/G)AGACT upstream-variant-2KB
rs2659099 -- 50,817,351(+) TGGGG(G/T)TGACT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MGC45922 Gene

Variant ID Type Subtype PubMed ID
dgv3977n71 CNV Loss 21882294
dgv203n21 CNV Loss 19592680
nsv516450 CNV Loss 19592680
dgv204n21 CNV Loss 19592680

Relevant External Links for MGC45922 Gene

HapMap Linkage Disequilibrium report
MGC45922

Disorders for MGC45922 Gene

No disorders were found for MGC45922 Gene.

No data available for UniProtKB/Swiss-Prot for MGC45922 Gene

Publications for MGC45922 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. Mapping DNA-protein interactions in large genomes by sequence tag analysis of genomic enrichment. (PMID: 15782160) Kim J. … Iyer V.R. (Nat. Methods 2005) 3

Products for MGC45922 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate MGC45922
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for MGC45922
    • Block miRNA regulation of MGC45922 using miScript Target Protectors

    Sources for MGC45922 Gene

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