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Aliases for MGC34796 Gene

Aliases for MGC34796 Gene

  • Sepiapterin Reductase (7,8-Dihydrobiopterin:NADP+ Oxidoreductase) Pseudogene 3
  • AC099791.1 5

External Ids for MGC34796 Gene

Previous GeneCards Identifiers for MGC34796 Gene

  • GC01U901035
  • GC01P061819
  • GC01P062120

Summaries for MGC34796 Gene

GeneCards Summary for MGC34796 Gene

MGC34796 (Sepiapterin Reductase (7,8-Dihydrobiopterin:NADP+ Oxidoreductase) Pseudogene) is a Pseudogene.

Additional gene information for MGC34796 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MGC34796 Gene

Genomics for MGC34796 Gene

GeneHancer (GH) Regulatory Elements for MGC34796 Gene

Promoters and enhancers for MGC34796 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I061637 Enhancer 1.4 UCNEbase Ensembl ENCODE 0.4 -14.1 -14145 4.9 PKNOX1 ATF1 ZBTB40 RAD21 ZNF121 SCRT2 ZNF143 ZNF350 ETV6 RCOR1 USP1 RNU6-1177P NFIA-AS2 MGC34796 LOC105378766
GH01I061587 Enhancer 1.4 VISTA Ensembl ENCODE 0.2 -65.2 -65195 2.5 ZSCAN4 SIN3A ZNF2 RAD21 ZNF366 ZNF143 RUNX3 DEK ZNF654 RXRA ENSG00000270742 NFIA-AS2 RNU6-1177P LOC105378766 MGC34796
GH01I061642 Enhancer 0.6 ENCODE 0.4 -11.6 -11570 0.2 SCRT1 ESRRA SIN3A MNT ZNF217 CTBP1 GATA3 SCRT2 RCOR1 NFIA-AS2 MGC34796 LOC105378766
GH01I061616 Enhancer 0.6 ENCODE 0.3 -37.5 -37516 0.9 SMARCE1 MEIS2 USF1 DPF2 NR2F2 FOSL1 MITF JUND IKZF1 VEZF1 MGC34796 LOC105378766
GH01I061605 Enhancer 0.9 FANTOM5 Ensembl ENCODE 0.2 -47.7 -47735 2.7 ZFP36 ZNF16 NFE2 RCOR1 USP1 NFIA-AS2 LOC105378766 MGC34796
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MGC34796 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MGC34796 Gene

Genomic Locations for MGC34796 Gene
chr1:61,654,194-61,656,128
(GRCh38/hg38)
Size:
1,935 bases
Orientation:
Plus strand
chr1:62,119,810-62,121,190
(GRCh37/hg19)

Genomic View for MGC34796 Gene

Genes around MGC34796 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MGC34796 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MGC34796 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MGC34796 Gene

Proteins for MGC34796 Gene

Post-translational modifications for MGC34796 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MGC34796 Gene

Domains & Families for MGC34796 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MGC34796 Gene

Function for MGC34796 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MGC34796 Gene

Localization for MGC34796 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MGC34796 Gene

Pathways & Interactions for MGC34796 Gene

SuperPathways for MGC34796 Gene

No Data Available

Interacting Proteins for MGC34796 Gene

Gene Ontology (GO) - Biological Process for MGC34796 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MGC34796 Gene

Drugs & Compounds for MGC34796 Gene

No Compound Related Data Available

Transcripts for MGC34796 Gene

mRNA/cDNA for MGC34796 Gene

(2) Additional mRNA sequences :
(1) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MGC34796 Gene

Sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MGC34796 Gene

No ASD Table

Relevant External Links for MGC34796 Gene

GeneLoc Exon Structure for
MGC34796

Expression for MGC34796 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MGC34796 Gene

mRNA differential expression in normal tissues according to GTEx for MGC34796 Gene

This gene is overexpressed in Testis (x41.9).

SOURCE GeneReport for Unigene cluster for MGC34796 Gene:

Hs.371864
genes like me logo Genes that share expression patterns with MGC34796: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MGC34796 Gene

Orthologs for MGC34796 Gene

Evolution for MGC34796 Gene

ENSEMBL:
Gene Tree for MGC34796 (if available)
TreeFam:
Gene Tree for MGC34796 (if available)

No data available for Orthologs for MGC34796 Gene

Paralogs for MGC34796 Gene

No data available for Paralogs for MGC34796 Gene

Variants for MGC34796 Gene

Sequence variations from dbSNP and Humsavar for MGC34796 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1001717029 -- 61,654,325(+) C/G non_coding_transcript_variant
rs1001925175 -- 61,654,439(+) G/A non_coding_transcript_variant
rs1002767181 -- 61,654,693(+) T/G non_coding_transcript_variant
rs1004067699 -- 61,655,052(+) T/C non_coding_transcript_variant
rs1004071609 -- 61,655,569(+) G/C non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MGC34796 Gene

Variant ID Type Subtype PubMed ID
dgv302n54 CNV loss 21841781
dgv42e212 CNV loss 25503493
dgv45e199 CNV deletion 23128226
nsv1010797 CNV gain 25217958
nsv435721 CNV deletion 17901297
nsv508226 CNV deletion 20534489

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for MGC34796 Gene

Disorders for MGC34796 Gene

Additional Disease Information for MGC34796

No disorders were found for MGC34796 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MGC34796 Gene

Publications for MGC34796 Gene

  1. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T … Vidal M (Cell 2014) 3 58
  2. A genome-wide association study for blood lipid phenotypes in the Framingham Heart Study. (PMID: 17903299) Kathiresan S … Cupples LA (BMC medical genetics 2007) 44 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  4. Systematic interactome mapping of acute lymphoblastic leukemia cancer gene products reveals EXT-1 tumor suppressor as a Notch1 and FBWX7 common interactor. (PMID: 27229929) Daakour S … Twizere JC (BMC cancer 2016) 3

Products for MGC34796 Gene

Sources for MGC34796 Gene

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