Free for academic non-profit institutions. Other users need a Commercial license

Aliases for MGC2889 Gene

Subcategory (RNA class) for MGC2889 Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for MGC2889 Gene

  • Uncharacterized Protein MGC2889 3

External Ids for MGC2889 Gene

Previous GeneCards Identifiers for MGC2889 Gene

  • GC03U990220
  • GC03P192959

Summaries for MGC2889 Gene

GeneCards Summary for MGC2889 Gene

MGC2889 (Uncharacterized Protein MGC2889) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for MGC2889 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MGC2889 Gene

Genomics for MGC2889 Gene

GeneHancer (GH) Regulatory Elements for MGC2889 Gene

Promoters and enhancers for MGC2889 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I193240 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE 550.8 -0.5 -503 2.1 ZSCAN4 INSM2 ZNF76 GLI4 ZNF335 EGR1 SCRT2 ZNF391 EGR2 ZNF280D HRASLS MGC2889 LOC105374280 VEZF1P1 ATP13A5-AS1
GH03I193301 Enhancer 0.5 ENCODE 0.2 +59.9 59868 0.2 JUND JUN ZNF629 FOS ATP13A5-AS1 MGC2889 ATP13A5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MGC2889 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the MGC2889 gene promoter:

Genomic Locations for MGC2889 Gene

Genomic Locations for MGC2889 Gene
chr3:193,241,779-193,243,972
(GRCh38/hg38)
Size:
2,194 bases
Orientation:
Plus strand
chr3:192,959,568-192,961,761
(GRCh37/hg19)

Genomic View for MGC2889 Gene

Genes around MGC2889 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MGC2889 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MGC2889 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MGC2889 Gene

Proteins for MGC2889 Gene

Post-translational modifications for MGC2889 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MGC2889 Gene

Domains & Families for MGC2889 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MGC2889 Gene

Function for MGC2889 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MGC2889 Gene

Localization for MGC2889 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MGC2889 Gene

Pathways & Interactions for MGC2889 Gene

SuperPathways for MGC2889 Gene

No Data Available

Interacting Proteins for MGC2889 Gene

Gene Ontology (GO) - Biological Process for MGC2889 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MGC2889 Gene

Drugs & Compounds for MGC2889 Gene

No Compound Related Data Available

Transcripts for MGC2889 Gene

mRNA/cDNA for MGC2889 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :

Unigene Clusters for MGC2889 Gene

Uncharacterized protein MGC2889:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MGC2889 Gene

No ASD Table

Relevant External Links for MGC2889 Gene

GeneLoc Exon Structure for
MGC2889

Expression for MGC2889 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MGC2889 Gene

SOURCE GeneReport for Unigene cluster for MGC2889 Gene:

Hs.676481
genes like me logo Genes that share expression patterns with MGC2889: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MGC2889 Gene

Orthologs for MGC2889 Gene

No data available for Orthologs and Evolution for MGC2889 Gene

Paralogs for MGC2889 Gene

No data available for Paralogs for MGC2889 Gene

Variants for MGC2889 Gene

Sequence variations from dbSNP and Humsavar for MGC2889 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000503403 -- 193,244,185(+) C/G downstream_transcript_variant
rs1000949207 -- 193,242,980(+) G/T non_coding_transcript_variant
rs1001210977 -- 193,244,382(+) A/G/T downstream_transcript_variant
rs1001285460 -- 193,244,293(+) G/T downstream_transcript_variant
rs1001379065 -- 193,244,029(+) A/C/G downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MGC2889 Gene

Variant ID Type Subtype PubMed ID
esv2759211 CNV gain 17122850
esv3377368 CNV insertion 20981092
nsv1003505 CNV gain 25217958
nsv428429 CNV gain 18775914

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for MGC2889 Gene

Disorders for MGC2889 Gene

Additional Disease Information for MGC2889

No disorders were found for MGC2889 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MGC2889 Gene

Publications for MGC2889 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for MGC2889 Gene

Sources for MGC2889 Gene

Content
Loading form....