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Aliases for MGC27345 Gene

Subcategory (RNA class) for MGC27345 Gene

lncRNA

Quality Score for this RNA gene is

11

Aliases for MGC27345 Gene

  • Uncharacterized Protein MGC27345 3

External Ids for MGC27345 Gene

ORGUL Members for MGC27345 Gene

Previous GeneCards Identifiers for MGC27345 Gene

  • GC07M126422
  • GC07M127484
  • GC07M127498
  • GC07U901501
  • GC07M127937
  • GC07Mg27327

Summaries for MGC27345 Gene

GeneCards Summary for MGC27345 Gene

MGC27345 (Uncharacterized Protein MGC27345) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for MGC27345 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MGC27345 Gene

Genomics for MGC27345 Gene

GeneHancer (GH) Regulatory Elements for MGC27345 Gene

Promoters and enhancers for MGC27345 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I128341 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 0.3 -35.5 -35478 2.6 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 RBM28 GC07P128370 RNU7-27P ZNF800 GCC1 ENSG00000243679 ENSG00000230715 ENSG00000243302 ENSG00000224138 ENSG00000242588
GH07I128303 Enhancer 0.4 ENCODE 0.8 +3.4 3363 1.2 ZNF316 ZNF189 PIR60686 MGC27345 RBM28 ENSG00000272915
GH07I128322 Enhancer 0.5 ENCODE 0.4 -14.5 -14490 0.2 ZNF830 CTCF ZNF654 SMC3 REST RUNX3 RAD21 RBM28 MGC27345
GH07I128310 Enhancer 0.2 ENCODE 0.8 -2.4 -2440 0.2 MGC27345 RBM28
GH07I128298 Enhancer 0.4 ENCODE 0.4 +8.4 8430 1.4 ZNF10 POU5F1 RBM28 PIR60686 MGC27345 ENSG00000272915
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MGC27345 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the MGC27345 gene promoter:

Genomic Locations for MGC27345 Gene

Genomic Locations for MGC27345 Gene
chr7:128,297,685-128,307,763
(GRCh38/hg38)
Size:
10,079 bases
Orientation:
Minus strand

Genomic View for MGC27345 Gene

Genes around MGC27345 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MGC27345 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MGC27345 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MGC27345 Gene

Proteins for MGC27345 Gene

  • Protein details for MGC27345 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    Q8TAC0
    Recommended name:
    HCG1816833
    Protein Accession:
    Q8TAC0

    Protein attributes for MGC27345 Gene

    Size:
    95 amino acids
    Molecular mass:
    10518 Da
    Quaternary structure:
    No Data Available

neXtProt entry for MGC27345 Gene

Post-translational modifications for MGC27345 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MGC27345 Gene

Domains & Families for MGC27345 Gene

Protein Domains for MGC27345 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for MGC27345 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MGC27345: view

No data available for Gene Families and UniProtKB/Swiss-Prot for MGC27345 Gene

Function for MGC27345 Gene

Animal Model Products

miRNA for MGC27345 Gene

miRTarBase miRNAs that target MGC27345

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for MGC27345 Gene

Localization for MGC27345 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MGC27345 Gene

Pathways & Interactions for MGC27345 Gene

SuperPathways for MGC27345 Gene

No Data Available

Interacting Proteins for MGC27345 Gene

Gene Ontology (GO) - Biological Process for MGC27345 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MGC27345 Gene

Drugs & Compounds for MGC27345 Gene

No Compound Related Data Available

Transcripts for MGC27345 Gene

mRNA/cDNA for MGC27345 Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :

Unigene Clusters for MGC27345 Gene

Uncharacterized protein MGC27345:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MGC27345 Gene

No ASD Table

Relevant External Links for MGC27345 Gene

GeneLoc Exon Structure for
MGC27345

Expression for MGC27345 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MGC27345 Gene

SOURCE GeneReport for Unigene cluster for MGC27345 Gene:

Hs.552129
genes like me logo Genes that share expression patterns with MGC27345: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MGC27345 Gene

Orthologs for MGC27345 Gene

No data available for Orthologs and Evolution for MGC27345 Gene

Paralogs for MGC27345 Gene

No data available for Paralogs for MGC27345 Gene

Variants for MGC27345 Gene

Sequence variations from dbSNP and Humsavar for MGC27345 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000809181 -- 128,299,460(-) T/C non_coding_transcript_variant
rs1001083676 -- 128,298,876(-) G/C/T non_coding_transcript_variant
rs1001353187 -- 128,306,654(-) T/C non_coding_transcript_variant
rs1001384016 -- 128,300,783(-) C/A non_coding_transcript_variant
rs1001399199 -- 128,309,632(-) C/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MGC27345 Gene

Variant ID Type Subtype PubMed ID
dgv6615n100 CNV gain 25217958
esv2764054 CNV gain 21179565
esv3576429 CNV gain 25503493
esv3614966 CNV gain 21293372
nsv437031 CNV loss 16327808
nsv525319 CNV gain 19592680

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for MGC27345 Gene

Disorders for MGC27345 Gene

Additional Disease Information for MGC27345

No disorders were found for MGC27345 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MGC27345 Gene

Publications for MGC27345 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for MGC27345 Gene

Sources for MGC27345 Gene

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