MGC21881 Gene
RNA gene GIFtS: 22
GCID: GC09M041952
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MGC21881
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Aliases
for MGC21881 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
Subcategory (RNA class): lncRNA
Quality score for this RNA gene is 2
| Aliases |
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| Uncharacterized Locus MGC218812 |
Export aliases for MGC21881 gene to outside databasesPrevious GC identifers: GC09U900568 GC09M041865 GC09M041942 GC09M041867 |
Summaries
for MGC21881 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
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Genomic Views
for MGC21881 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000009.11 NT_078043.5
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the MGC21881 gene promoter:
TBP GATA-3 Nkx2-2 HNF-4alpha2 Evi-1 GATA-1 HNF-4alpha1 AREB6 SEF-1 (1) MRF-2
Other transcription factors
Search SABiosciences Chromatin IP Primers for MGC21881
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat MGC21881 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 9q21.11 Ensembl cytogenetic band: 9q13 MGC21881 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 9 GeneLoc Exon Structure GeneLoc location for GC09M041952: view genomic region
(about GC identifiers)
Start:
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41,952,399 bp from pter |
End:
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41,955,076 bp from pter |
Size:
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2,678 bases |
Orientation:
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minus strand |
1 alternative location:
| Chr9+ 66,553,273-66,555,928 |
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Proteins
for MGC21881 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
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UniProtKB: --
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Protein
Domains /
Families
for MGC21881 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
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Function
for MGC21881 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for MGC21881 |
1 GenomeRNAi human phenotype for MGC21881:
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Pathways & Interactions
for MGC21881 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
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Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for MGC21881
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Drugs & Compounds
for MGC21881 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for MGC21881
Search CenterWatch for drugs/clinical trials and news about MGC21881 
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Transcripts
for MGC21881 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for MGC21881 gene: NM_203448.1 Unigene Clusters for MGC21881: Uncharacterized locus MGC21881 Hs.380240 [show with all ESTs], Hs.732469 [show with all ESTs], Hs.733665 [show with all ESTs]Unigene Representative Sequences: BC040170, DA128434, AK1277893 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000305709(lincRNA)(uc004aeg.4) ENST00000476224(lincRNA) ENST00000467494(lincRNA)
Additional cDNA sequence: AK127789.1 15 DOTS entries: DT.110426 DT.91753234 DT.100790355 DT.100027931 DT.95115743 DT.92426456 DT.121212258 DT.65288697 DT.97818566 DT.100790356 DT.99955001 DT.100027935 DT.100659840 DT.121212228 DT.75144237 24/72 AceView cDNA sequences (see all 72): AA252514 AI371892 AI202406 AI190734 AI672259 AA781242 AI184812 AW299291 BF197639 BF197113 BV201023 CD246083 BC081570 BE326784 BV200920 AI333194 AA708832 AA700130 BV201021 AI131413 AI740736 BM984621 BV201018 BV179719
GeneLoc Exon Structure
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Expression
for MGC21881 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| Expression evidence for MGC21881:none
MGC21881 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: GCTGACAATT
About this image
Genevestigator expression for MGC21881
SOURCE GeneReport for Unigene clusters: Hs.380240 Hs.732469 Hs.733665
SABiosciences Custom PCR Arrays for MGC21881
Primer
Products: |  | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for MGC21881
Browse OriGene validated miRNA SYBR primer pairs
| | | Search SABiosciences RT2 qPCR
Primer Assays in human, mouse, rat MGC21881 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat MGC21881 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat MGC21881 | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for MGC21881 |
Orthologs
for MGC21881 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
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ENSEMBL Gene Tree for MGC21881 (if available)
TreeFam Gene Tree for MGC21881 (if available) |
Paralogs
for MGC21881 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for MGC21881 gene
MGC21881 for paralogs About GeneDecksing
5/6 Pseudogenes.org Pseudogenes for MGC21881 (see all 6)
PGOHUM00000260458 PGOHUM00000236103 PGOHUM00000250498 PGOHUM00000236490 PGOHUM00000260509
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Genomic Variants
for MGC21881 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
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Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 4 variations for MGC21881
4 CNVs: 31487 2817 3769 33102 | SABiosciences Cancer Mutation PCR Assays |
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Disorders
/ Diseases
for MGC21881 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
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Publications
for MGC21881 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
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PubMed articles for MGC21881 gene integrated from 9 sources:
(articles sorted by number of sources associating them with MGC21881) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Towards a proteome-scale map of the human protein-protein interaction network. (PubMed id 16189514)1 Rual J.F....Vidal M. (2005)
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1 Ota T.... Sugano S. (2004)
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
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External Searches for MGC21881 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
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Genome Databases showing MGC21881 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
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Other Databases showing MGC21881 gene
(According to HUGE)
About This Section
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Specialized Databases showing MGC21881 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
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About This Section
| Patent Information for MGC21881 gene:
Search GeneIP for patents involving MGC21881
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Products
for MGC21881 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
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|  | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat MGC21881 | | | Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing MGC21881 | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat MGC21881 | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat MGC21881 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat MGC21881 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat MGC21881 |
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 | | | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for MGC21881 |
|  |  |  | | | | Search ThermoFisher Antibodies for MGC21881 |
| | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat MGC21881 |
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