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Aliases for MGC20647 Gene

Subcategory (RNA class) for MGC20647 Gene

antisense

Aliases for MGC20647 Gene

  • Uncharacterized Protein MGC20647 3
  • RP1-102K2.8 5

External Ids for MGC20647 Gene

ORGUL Members for MGC20647 Gene

Previous GeneCards Identifiers for MGC20647 Gene

  • GC22P027338
  • GC22U900011

Summaries for MGC20647 Gene

GeneCards Summary for MGC20647 Gene

MGC20647 (Uncharacterized Protein MGC20647) is a Protein Coding gene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MGC20647 Gene

Genomics for MGC20647 Gene

Regulatory Elements for MGC20647 Gene

Enhancers for MGC20647 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH22G030234 2 FANTOM5 Ensembl ENCODE dbSUPER 11.9 +0.5 526 24.6 HDGF PKNOX1 ZFP64 ARID4B SIN3A FEZF1 ZNF2 ZBTB7B ZNF416 ZNF143 TUG1 HORMAD2-AS1 LIF MGC20647 MORC2 SEC14L4 DUSP18 THOC5 ENSG00000181123 ASCC2
GH22G029820 1.6 Ensembl ENCODE dbSUPER 10.5 -424.4 -424449 2.4 FOXA2 PKNOX1 CREB3L1 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ASCC2 MGC20647 SEC14L6 UQCR10
GH22G029552 1.1 ENCODE 11.1 -691.9 -691850 3.5 HDGF PKNOX1 CREB3L1 ARNT AGO1 ARID4B SIN3A DMAP1 ZNF2 YY1 THOC5 NIPSNAP1 ENSG00000272858 MGC20647 ENSG00000234208
GH22G030840 1.1 ENCODE dbSUPER 10.5 +596.5 596540 5.1 TBP JUN MAX BRCA1 ZNF2 ZIC2 RFX5 ZNF664 GTF3C2 ARID3A TUG1 MORC2 PRR14L MGC20647 SEC14L3 OSBP2 DUSP18 SLC35E4 LOC105372994 MIR3200
GH22G031159 1.1 ENCODE 10.5 +914.4 914446 2.4 PKNOX1 FOXA2 CREB3L1 ARNT ZFP64 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 TUG1 MORC2 PRR14L MGC20647 RPS17P16 SFI1 RNF185 PIR51329
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MGC20647 on UCSC Golden Path with GeneCards custom track

Promoters for MGC20647 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000145189 295 1001 ZNF493 ARID4B GLI4 ZNF2 GLIS2 FOS KLF7 ZNF263 ZNF610 SMARCA4

Genomic Location for MGC20647 Gene

Chromosome:
22
Start:
30,246,205 bp from pter
End:
30,246,998 bp from pter
Size:
794 bases
Orientation:
Plus strand

Genomic View for MGC20647 Gene

Genes around MGC20647 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MGC20647 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MGC20647 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MGC20647 Gene

Proteins for MGC20647 Gene

  • Protein details for MGC20647 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    Q96CH6
    Recommended name:
    MGC20647 protein
    Protein Accession:
    Q96CH6

    Protein attributes for MGC20647 Gene

    Size:
    235 amino acids
    Molecular mass:
    24864 Da
    Quaternary structure:
    No Data Available
  • Protein details for MGC20647 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    Q96HQ3
    Recommended name:
    MGC20647 protein
    Protein Accession:
    Q96HQ3

    Protein attributes for MGC20647 Gene

    Size:
    240 amino acids
    Molecular mass:
    25349 Da
    Quaternary structure:
    No Data Available

neXtProt entry for MGC20647 Gene

Post-translational modifications for MGC20647 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MGC20647 Gene

Domains & Families for MGC20647 Gene

Protein Domains for MGC20647 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for MGC20647 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MGC20647: view

No data available for Gene Families and UniProtKB/Swiss-Prot for MGC20647 Gene

Function for MGC20647 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MGC20647 Gene

Localization for MGC20647 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MGC20647 Gene

Pathways & Interactions for MGC20647 Gene

SuperPathways for MGC20647 Gene

No Data Available

Interacting Proteins for MGC20647 Gene

Gene Ontology (GO) - Biological Process for MGC20647 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MGC20647 Gene

Drugs & Compounds for MGC20647 Gene

No Compound Related Data Available

Transcripts for MGC20647 Gene

mRNA/cDNA for MGC20647 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MGC20647 Gene

Uncharacterized protein MGC20647:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MGC20647 Gene

No ASD Table

Relevant External Links for MGC20647 Gene

GeneLoc Exon Structure for
MGC20647

Expression for MGC20647 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MGC20647 Gene

mRNA expression in normal human tissues for MGC20647 Gene

SOURCE GeneReport for Unigene cluster for MGC20647 Gene:

Hs.658999
genes like me logo Genes that share expression patterns with MGC20647: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MGC20647 Gene

Orthologs for MGC20647 Gene

Evolution for MGC20647 Gene

ENSEMBL:
Gene Tree for MGC20647 (if available)
TreeFam:
Gene Tree for MGC20647 (if available)

No data available for Orthologs for MGC20647 Gene

Paralogs for MGC20647 Gene

No data available for Paralogs for MGC20647 Gene

Variants for MGC20647 Gene

Sequence variations from dbSNP and Humsavar for MGC20647 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
rs1000148623 -- 30,246,739(+) GATGC(C/T)GGCAG nc-transcript-variant, utr-variant-5-prime
rs1000980798 -- 30,246,142(+) CGGGA(-/G)GGGGG intron-variant, upstream-variant-2KB
rs1002436399 -- 30,244,791(+) TTGAG(C/T)TGTGC intron-variant, upstream-variant-2KB, reference, synonymous-codon
rs1003104092 -- 30,247,477(+) AGGGG(A/C)TAGGA downstream-variant-500B, upstream-variant-2KB
rs1003510468 -- 30,244,316(+) GGGAC(A/G)GAAGG intron-variant, upstream-variant-2KB

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for MGC20647 Gene

Disorders for MGC20647 Gene

Relevant External Links for MGC20647

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MGC20647

No disorders were found for MGC20647 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MGC20647 Gene

Publications for MGC20647 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for MGC20647 Gene

Sources for MGC20647 Gene

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