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Aliases for MGC16275 Gene

Subcategory (RNA class) for MGC16275 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for MGC16275 Gene

  • Uncharacterized Protein MGC16275 3 5
  • CTD-2514K5.2 3

External Ids for MGC16275 Gene

Previous GeneCards Identifiers for MGC16275 Gene

  • GC17U990262
  • GC17M072206

Summaries for MGC16275 Gene

GeneCards Summary for MGC16275 Gene

MGC16275 (Uncharacterized Protein MGC16275) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for MGC16275 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MGC16275 Gene

Genomics for MGC16275 Gene

Regulatory Elements for MGC16275 Gene

Enhancers for MGC16275 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17H074511 2.1 FANTOM5 Ensembl ENCODE dbSUPER 14 -300.3 -300262 3.3 HDGF PKNOX1 ARNT SIN3A YBX1 FEZF1 ZNF2 ZNF302 ZNF416 ZNF207 NUP85 NAT9 NT5C GGA3 RN7SL573P HID1-AS1 CD300E CDR2L CD300A ENSG00000266765
GH17H075085 2 FANTOM5 Ensembl ENCODE dbSUPER 14 -878.2 -878154 11.9 HDGF PKNOX1 FOXA2 MLX ARNT ZFP64 ARID4B SIN3A YBX1 ZNF2 NUP85 UNK NT5C ENSG00000266980 ENSG00000267342 NAT9 GGA3 TRIM65 RN7SL573P SAP30BP
GH17H074461 1.9 FANTOM5 Ensembl ENCODE dbSUPER 14.1 -252.4 -252428 9.3 HDGF PKNOX1 FOXA2 ZFP64 SIN3A YBX1 ZNF766 ZNF143 ZNF207 SP5 NAT9 NUP85 NT5C GGA3 CD300A MGC16275 GPR142 CD300LB ARMC7 BTBD17
GH17H074568 1.8 FANTOM5 Ensembl ENCODE dbSUPER 14 -356.2 -356215 1.5 TBP ZNF473 ZSCAN4 SIN3A ZNF195 YBX1 GLI4 EGR1 FOS EGR2 NAT9 NUP85 CD300E NT5C CD300C CD300LB GGA3 ENSG00000266765 LINC02092 ENSG00000265935
GH17H074273 1.2 Ensembl ENCODE dbSUPER 16.7 -61.2 -61217 1.4 ZNF687 RFX1 NR2F1 BHLHE40 MAX USF2 EBF1 ZNF592 IKZF1 FOXJ2 TTYH2 MGC16275 DNAI2 GGA3 ENSG00000266106
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MGC16275 on UCSC Golden Path with GeneCards custom track

Promoters for MGC16275 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000098164 42 1801 HDAC1 PKNOX1 ZNF76 KLF17 DMAP1 RAD21 GLIS2 ZNF366 ZNF143 RCOR1

Genomic Locations for MGC16275 Gene

Genomic Locations for MGC16275 Gene
chr17:74,209,980-74,213,342
(GRCh38/hg38)
Size:
3,363 bases
Orientation:
Minus strand
chr17:72,206,119-72,209,481
(GRCh37/hg19)

Genomic View for MGC16275 Gene

Genes around MGC16275 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MGC16275 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MGC16275 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MGC16275 Gene

Proteins for MGC16275 Gene

Post-translational modifications for MGC16275 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MGC16275 Gene

Domains & Families for MGC16275 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MGC16275 Gene

Function for MGC16275 Gene

Phenotypes From GWAS Catalog for MGC16275 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MGC16275 Gene

Localization for MGC16275 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MGC16275 Gene

Pathways & Interactions for MGC16275 Gene

SuperPathways for MGC16275 Gene

No Data Available

Interacting Proteins for MGC16275 Gene

Gene Ontology (GO) - Biological Process for MGC16275 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MGC16275 Gene

Drugs & Compounds for MGC16275 Gene

No Compound Related Data Available

Transcripts for MGC16275 Gene

mRNA/cDNA for MGC16275 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MGC16275 Gene

Uncharacterized protein MGC16275:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MGC16275 Gene

No ASD Table

Relevant External Links for MGC16275 Gene

GeneLoc Exon Structure for
MGC16275

Expression for MGC16275 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MGC16275 Gene

SOURCE GeneReport for Unigene cluster for MGC16275 Gene:

Hs.706954
genes like me logo Genes that share expression patterns with MGC16275: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MGC16275 Gene

Orthologs for MGC16275 Gene

Evolution for MGC16275 Gene

ENSEMBL:
Gene Tree for MGC16275 (if available)
TreeFam:
Gene Tree for MGC16275 (if available)

No data available for Orthologs for MGC16275 Gene

Paralogs for MGC16275 Gene

No data available for Paralogs for MGC16275 Gene

Variants for MGC16275 Gene

Sequence variations from dbSNP and Humsavar for MGC16275 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1000108139 -- 74,212,251(+) GGCCC(C/G)GAGGC intron-variant, upstream-variant-2KB
rs1000859198 -- 74,211,892(+) ACCCC(C/G)CTCTT intron-variant, upstream-variant-2KB
rs1001280115 -- 74,211,360(+) CACCT(C/T)TCTGG nc-transcript-variant
rs1001307131 -- 74,213,331(+) ACCTC(C/G)AGACT upstream-variant-2KB
rs1001709978 -- 74,211,579(+) GACCA(A/C/T)CCACT nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MGC16275 Gene

Variant ID Type Subtype PubMed ID
nsv833538 CNV gain 17160897
nsv517569 CNV gain+loss 19592680
nsv509673 CNV insertion 20534489
esv3641230 CNV gain 21293372
esv3573820 CNV gain 25503493
esv2761978 CNV gain 21179565
esv2751770 CNV gain 17911159
dgv587e214 CNV gain 21293372
dgv5768n54 CNV gain 21841781
dgv372n27 CNV gain 19166990
dgv3282n100 CNV gain 25217958
dgv12e196 CNV duplication 17116639

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for MGC16275 Gene

Disorders for MGC16275 Gene

Relevant External Links for MGC16275

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MGC16275

No disorders were found for MGC16275 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MGC16275 Gene

Publications for MGC16275 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for MGC16275 Gene

Sources for MGC16275 Gene

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