Free for academic non-profit institutions. Other users need a Commercial license

Aliases for MGC16275 Gene

Subcategory (RNA class) for MGC16275 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for MGC16275 Gene

  • Uncharacterized Protein MGC16275 3 5
  • CTD-2514K5.2 3

External Ids for MGC16275 Gene

Previous GeneCards Identifiers for MGC16275 Gene

  • GC17U990262
  • GC17M072206

Summaries for MGC16275 Gene

GeneCards Summary for MGC16275 Gene

MGC16275 (Uncharacterized Protein MGC16275) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MGC16275 Gene

Genomics for MGC16275 Gene

Regulatory Elements for MGC16275 Gene

Enhancers for MGC16275 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17G074511 2 FANTOM5 Ensembl ENCODE dbSUPER 14 -300.3 -300262 3.3 HDGF PKNOX1 ARNT SIN3A YBX1 FEZF1 ZNF2 ZNF302 CBX5 ZNF416 NAT9 NT5C NUP85 RN7SL573P CD300E HID1-AS1 CD300A MGC16275 KCTD2 CD300C
GH17G074461 2 FANTOM5 Ensembl ENCODE dbSUPER 14 -252.4 -252428 9.3 HDGF PKNOX1 FOXA2 WRNIP1 ZFP64 ARID4B SIN3A YBX1 ZNF766 ZNF143 CD300A MGC16275 GPR142 CD300LB BTBD17 NAT9 CD300C CD300E CD300LF CD300LD
GH17G075085 2 FANTOM5 Ensembl ENCODE dbSUPER 14 -878.2 -878154 11.9 CREB3L1 MLX ZFP64 YBX1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 ENSG00000267342 NAT9 MGC16275 SLC16A5 CDR2L RN7SL573P MIF4GD SUMO2 MRPS7 MRPL58
GH17G074568 1.8 FANTOM5 Ensembl ENCODE dbSUPER 14 -356.2 -356215 1.5 TBP ZNF473 ZSCAN4 SIN3A ZNF195 YBX1 GLI4 EGR1 FOS EGR2 CD300E NAT9 CD300C NUP85 CD300LB NT5C CD300LD MGC16275 CASKIN2 RN7SL573P
GH17G074273 1.2 Ensembl ENCODE dbSUPER 16.7 -61.2 -61217 1.4 USF1 MAX SIN3A EBF1 RAD21 GATA3 IKZF2 EZH2 RFX1 BHLHE40 TTYH2 MGC16275 DNAI2 GGA3 ENSG00000266106
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MGC16275 on UCSC Golden Path with GeneCards custom track

Promoters for MGC16275 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000098164 42 1801 PKNOX1 AGO1 DMAP1 GLIS2 SP3 TAF15 SP5 GLIS1 HNF4A PRDM4

Genomic Location for MGC16275 Gene

Chromosome:
17
Start:
74,209,980 bp from pter
End:
74,213,342 bp from pter
Size:
3,363 bases
Orientation:
Minus strand

Genomic View for MGC16275 Gene

Genes around MGC16275 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MGC16275 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MGC16275 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MGC16275 Gene

Proteins for MGC16275 Gene

Post-translational modifications for MGC16275 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MGC16275 Gene

Domains & Families for MGC16275 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MGC16275 Gene

Function for MGC16275 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MGC16275 Gene

Localization for MGC16275 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MGC16275 Gene

Pathways & Interactions for MGC16275 Gene

SuperPathways for MGC16275 Gene

No Data Available

Interacting Proteins for MGC16275 Gene

Gene Ontology (GO) - Biological Process for MGC16275 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MGC16275 Gene

Transcripts for MGC16275 Gene

mRNA/cDNA for MGC16275 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MGC16275 Gene

Uncharacterized protein MGC16275:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MGC16275 Gene

No ASD Table

Relevant External Links for MGC16275 Gene

GeneLoc Exon Structure for
MGC16275

Expression for MGC16275 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MGC16275 Gene

SOURCE GeneReport for Unigene cluster for MGC16275 Gene:

Hs.706954
genes like me logo Genes that share expression patterns with MGC16275: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MGC16275 Gene

Orthologs for MGC16275 Gene

Evolution for MGC16275 Gene

ENSEMBL:
Gene Tree for MGC16275 (if available)
TreeFam:
Gene Tree for MGC16275 (if available)

No data available for Orthologs for MGC16275 Gene

Paralogs for MGC16275 Gene

No data available for Paralogs for MGC16275 Gene

Variants for MGC16275 Gene

Sequence variations from dbSNP and Humsavar for MGC16275 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1000108139 -- 74,212,251(+) GGCCC(C/G)GAGGC intron-variant, upstream-variant-2KB
rs1000859198 -- 74,211,892(+) ACCCC(C/G)CTCTT intron-variant, upstream-variant-2KB
rs1001280115 -- 74,211,360(+) CACCT(C/T)TCTGG nc-transcript-variant
rs1001307131 -- 74,213,331(+) ACCTC(C/G)AGACT upstream-variant-2KB
rs1001709978 -- 74,211,579(+) GACCA(A/C/T)CCACT nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MGC16275 Gene

Variant ID Type Subtype PubMed ID
dgv12e196 CNV duplication 17116639
dgv3282n100 CNV gain 25217958
dgv372n27 CNV gain 19166990
dgv5768n54 CNV gain 21841781
dgv587e214 CNV gain 21293372
esv2751770 CNV gain 17911159
esv2761978 CNV gain 21179565
esv3573820 CNV gain 25503493
esv3641230 CNV gain 21293372
nsv509673 CNV insertion 20534489
nsv517569 CNV gain+loss 19592680
nsv833538 CNV gain 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for MGC16275 Gene

Disorders for MGC16275 Gene

Relevant External Links for MGC16275

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MGC16275

No disorders were found for MGC16275 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MGC16275 Gene

Publications for MGC16275 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for MGC16275 Gene

Sources for MGC16275 Gene

Content
Loading form....