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Aliases for MGC16275 Gene

Subcategory (RNA class) for MGC16275 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for MGC16275 Gene

  • Uncharacterized Protein MGC16275 3 5
  • CTD-2514K5.2 3

External Ids for MGC16275 Gene

Previous GeneCards Identifiers for MGC16275 Gene

  • GC17U990262
  • GC17M072206

Summaries for MGC16275 Gene

GeneCards Summary for MGC16275 Gene

MGC16275 (Uncharacterized Protein MGC16275) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MGC16275 Gene

Genomics for MGC16275 Gene

Regulatory Elements for MGC16275 Gene

Enhancers for MGC16275 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F074273 0.9 Ensembl ENCODE 16.7 -61.4 -61378 1.8 HDGF RFX1 USF1 BHLHE40 MAX SIN3A USF2 EBF1 RAD21 JUND TTYH2 MGC16275 DNAI2 GGA3 ENSG00000266106
GH17F074279 1.5 FANTOM5 Ensembl ENCODE 16.5 -66.9 -66939 1.4 MTA2 NR2F1 PBX2 IKZF1 EED EBF1 CREM SPI1 CD300E MGC16275 CD300C CD300LB TTYH2 TMEM104 CD300LF CD300LD CD300A DNAI2
GH17F074275 0.7 Ensembl ENCODE 16 -63.1 -63091 1.4 HDGF ZFHX2 SMARCA4 EBF1 ZIC2 ATF2 MAFK MGC16275 TTYH2 GGA3 DNAI2 ENSG00000266106
GH17F074511 1.1 FANTOM5 Ensembl ENCODE 14 -300.3 -300262 3.3 HDGF PKNOX1 ARNT SIN3A YBX1 FEZF1 ZNF2 ZNF302 CBX5 ZNF416 NUP85 NAT9 NT5C CD300E RN7SL573P LOC100130520 ENSG00000266765 ENSG00000265927 LINC02092 ENSG00000265935
GH17F075085 1.3 FANTOM5 Ensembl ENCODE 14 -878.2 -878154 11.9 MLX CREB3L1 ZFP64 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 MCM3 SP3 ENSG00000264829 MGC16275 SLC16A5 CDR2L ENSG00000267342 MIF4GD NAT9 MRPS7 MRPL58 MYO15B
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around MGC16275 on UCSC Golden Path with GeneCards custom track

Promoters for MGC16275 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001352950 42 2201 ZNF76 KLF17 DMAP1 GLIS2 ZNF366 SMARCA5 ZNF362 SP3 SP5 CEBPB

Genomic Location for MGC16275 Gene

Chromosome:
17
Start:
74,209,980 bp from pter
End:
74,213,342 bp from pter
Size:
3,363 bases
Orientation:
Minus strand

Genomic View for MGC16275 Gene

Genes around MGC16275 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MGC16275 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MGC16275 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MGC16275 Gene

Proteins for MGC16275 Gene

Post-translational modifications for MGC16275 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MGC16275 Gene

Domains & Families for MGC16275 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MGC16275 Gene

Function for MGC16275 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MGC16275 Gene

Localization for MGC16275 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MGC16275 Gene

Pathways & Interactions for MGC16275 Gene

SuperPathways for MGC16275 Gene

No Data Available

Interacting Proteins for MGC16275 Gene

Gene Ontology (GO) - Biological Process for MGC16275 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MGC16275 Gene

Transcripts for MGC16275 Gene

mRNA/cDNA for MGC16275 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MGC16275 Gene

Uncharacterized protein MGC16275:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MGC16275 Gene

No ASD Table

Relevant External Links for MGC16275 Gene

GeneLoc Exon Structure for
MGC16275

Expression for MGC16275 Gene

mRNA expression in normal human tissues for MGC16275 Gene

SOURCE GeneReport for Unigene cluster for MGC16275 Gene:

Hs.706954
genes like me logo Genes that share expression patterns with MGC16275: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MGC16275 Gene

Orthologs for MGC16275 Gene

Evolution for MGC16275 Gene

ENSEMBL:
Gene Tree for MGC16275 (if available)
TreeFam:
Gene Tree for MGC16275 (if available)

No data available for Orthologs for MGC16275 Gene

Paralogs for MGC16275 Gene

No data available for Paralogs for MGC16275 Gene

Variants for MGC16275 Gene

Sequence variations from dbSNP and Humsavar for MGC16275 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs10646 -- 74,209,819(+) GAAGG(A/T)ACTGA downstream-variant-500B, reference, missense
rs1105052 -- 74,214,753(+) ATTCA(A/G)AGCCA intron-variant, upstream-variant-2KB
rs111588072 -- 74,212,153(+) CCCCA(A/G)TGAGA intron-variant, upstream-variant-2KB
rs111642311 -- 74,214,951(+) ATGGT(A/G)CCTGC intron-variant, upstream-variant-2KB
rs111790288 -- 74,209,924(+) TACCT(C/T)GTAGT downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for MGC16275 Gene

Variant ID Type Subtype PubMed ID
dgv12e196 CNV duplication 17116639
dgv3282n100 CNV gain 25217958
dgv372n27 CNV gain 19166990
dgv5768n54 CNV gain 21841781
dgv587e214 CNV gain 21293372
esv2751770 CNV gain 17911159
esv2761978 CNV gain 21179565
esv3573820 CNV gain 25503493
esv3641230 CNV gain 21293372
nsv509673 CNV insertion 20534489
nsv517569 CNV gain+loss 19592680
nsv833538 CNV gain 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for MGC16275 Gene

Disorders for MGC16275 Gene

Relevant External Links for MGC16275

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MGC16275

No disorders were found for MGC16275 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MGC16275 Gene

Publications for MGC16275 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for MGC16275 Gene

Sources for MGC16275 Gene

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