MGC16025 Gene
RNA gene GIFtS: 22
GCID: GC02M240115
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MGC16025
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Aliases
for MGC16025 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
Subcategory (RNA class): lncRNA
Quality score for this RNA gene is 1
| Aliases |
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| Uncharacterized LOC850092 |
| External Ids: | Entrez Gene: 850092 | UniProtKB: Q53SB44 | UniProtKB: Q53SM24 | | ORGUL members: | |
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| NONCODE:n387175 | |
Export aliases for MGC16025 gene to outside databasesPrevious GC identifers: GC02M238057 GC02M238688 GC02M240030 GC02M240327 GC02U900722 GC02M239781
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Summaries
for MGC16025 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
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Genomic Views
for MGC16025 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000002.11 NC_018913.1 NT_022173.11
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the MGC16025 gene promoter:
Max1 NF-1 NF-1/L XBP-1 Nkx5-1 Roaz HEN1 E2F-1 E2F c-Myc
Other transcription factors
Search SABiosciences Chromatin IP Primers for MGC16025
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat MGC16025 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 2q37.3 MGC16025 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 2 GeneLoc Exon Structure GeneLoc location for GC02M240115: view genomic region
(about GC identifiers)
Start:
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240,115,027 bp from pter |
End:
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240,117,153 bp from pter |
Size:
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2,127 bases |
Orientation:
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minus strand |
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Proteins
for MGC16025 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
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UniProtKB/TrEMBL: Q53SB4 (See
protein sequence)Recommended Name: Putative uncharacterized protein MGC16025 Size: 31 amino acids; 3359 DaUniProtKB/TrEMBL: Q53SM2 (See
protein sequence) Recommended Name: Putative uncharacterized protein MGC16025 Size: 1052 amino acids; 115600 Da |
Protein
Domains /
Families
for MGC16025 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
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MGC16025 for domains About GeneDecksing
5 InterPro domains/families:Graphical View of Domain Structure for InterPro Entry Q53SB4Graphical View of Domain Structure for InterPro Entry Q53SM2ProtoNet protein and cluster: Q53SB4 |
Function
for MGC16025 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for MGC16025 |
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Pathways & Interactions
for MGC16025 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
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Unified GeneCards pathways - 5/13 super-pathways (see all 13) About this table 
See pathways by source
| Super-pathway | contained gene-specific pathways |
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| 1 | Cyclins and Cell Cycle Regulation | | | 2 | DNA Methylation and Transcriptional Repression | | | 3 | BRCA1 Pathway | | | 4 | SMAD Signaling Network | | | 5 | NFAT and Cardiac Hypertrophy | |
5/15 Downloadable PowerPoint Slides of QIAGEN Pathway Central Maps for MGC16025 (see all 15)
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for MGC16025
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Drugs & Compounds
for MGC16025 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for MGC16025
Search CenterWatch for drugs/clinical trials and news about MGC16025
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Transcripts
for MGC16025 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
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REFSEQ mRNAs for MGC16025 gene: NM_032923.1 Unigene Cluster for MGC16025: Uncharacterized LOC85009 Hs.744565 [show with all ESTs]Unigene Representative Sequence: BC008026
Additional cDNA sequence: BC008026.1 NR_026664.1 1 DOTS entry: DT.92045609
GeneLoc Exon Structure
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Expression
for MGC16025 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| Expression evidence for MGC16025:none
MGC16025 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: TTTTTGAAGT
About this image
Genevestigator expression for MGC16025
SOURCE GeneReport for Unigene cluster: Hs.744565
SABiosciences Custom PCR Arrays for MGC16025
Primer
Products: |  | Browse OriGene genome-wide validated SYBR primer pairs
Browse OriGene validated miRNA SYBR primer pairs
| | | Search SABiosciences RT2 qPCR
Primer Assays in human, mouse, rat MGC16025 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat MGC16025 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat MGC16025 | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for MGC16025 |
Orthologs
for MGC16025 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
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Paralogs
for MGC16025 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
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Genomic Variants
for MGC16025 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 1 variation for MGC16025
1 CNV: 4330 | SABiosciences Cancer Mutation PCR Assays |
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Disorders
/ Diseases
for MGC16025 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
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MGC16025 for disorders About GeneDecksing
2  diseases for MGC16025: About MalaCardsmelanoma huntington's disease
Export disorders for MGC16025 gene to outside databases
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Publications
for MGC16025 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
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PubMed articles for MGC16025 gene integrated from 9 sources:
(articles sorted by number of sources associating them with MGC16025) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Frequent occurrence of high affinity T cells against MELOE-1 makes this antigen an attractive target for melanoma immunotherapy. (PubMed id 20217862)1 Godet Y....LabarriA"re N. (2010)
- MELOE-1 is a new antigen overexpressed in melanomas and involved in adoptive T cell transfer efficiency. (PubMed id 18936238)1 Godet Y....Labarriere N. (2008)
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
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External Searches for MGC16025 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
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Genome Databases showing MGC16025 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
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Other Databases showing MGC16025 gene
(According to HUGE)
About This Section
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Specialized Databases showing MGC16025 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
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About This Section
| Patent Information for MGC16025 gene:
Search GeneIP for patents involving MGC16025
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Products
for MGC16025 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
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|  | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat MGC16025 | | | Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing MGC16025 | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat MGC16025 | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat MGC16025 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat MGC16025 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat MGC16025 |
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 | | | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for MGC16025 |
|  |  |  | | | | Search ThermoFisher Antibodies for MGC16025 |
| | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat MGC16025 |
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GeneCards Homepage -
Last full update: 19 Mar 2013 -
Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013
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