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Aliases for MGC15885 Gene

Subcategory (RNA class) for MGC15885 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for MGC15885 Gene

  • Uncharacterized Protein MGC15885 3 5

External Ids for MGC15885 Gene

Previous GeneCards Identifiers for MGC15885 Gene

  • GC15M058715
  • GC15M055977
  • GC15M060508
  • GC15U900145
  • GC15M060645
  • GC15M060717
  • GC15M062929
  • GC15M062742
  • GC15M062777
  • GC15M063095
  • GC15M063283
  • GC15M063420
  • GC15M063545
  • GC15M063667

Summaries for MGC15885 Gene

GeneCards Summary for MGC15885 Gene

MGC15885 (Uncharacterized Protein MGC15885) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for MGC15885 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MGC15885 Gene

Genomics for MGC15885 Gene

GeneHancer (GH) Regulatory Elements for MGC15885 Gene

Promoters and enhancers for MGC15885 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15I062643 Enhancer 0.4 ENCODE 550.8 +0.4 361 2.6 POLR2A ZIC2 MAFK MGC15885 GC15P069436 TLN2
GH15I062647 Promoter/Enhancer 1.5 EPDnew Ensembl ENCODE 0.8 -2.4 -2409 1.2 KLF17 RAD21 RFX5 ZNF366 RCOR1 FOS DEK SMARCC1 USF2 CEBPB TLN2 MGC15885 LOC105370855
GH15I062649 Enhancer 0.9 Ensembl ENCODE 0.8 -4.6 -4586 0.6 BATF IRF4 ZFHX2 ZNF316 BCLAF1 IKZF2 MAFK RUNX3 EGR2 SRF MGC15885 LOC105370855 TLN2
GH15I062603 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +41.3 41290 1.4 JUN MAX BRCA1 RAD21 RFX5 GTF3C2 GATA3 HNF4G RCOR1 FOSL2 TLN2 VPS13C MGC15885 GC15P069436
GH15I062623 Enhancer 1 Ensembl ENCODE dbSUPER 0.3 +20.2 20213 2.2 NR2F1 JUNB BATF IRF4 ZFHX2 POLR2A RCOR1 RUNX3 EGR2 CHD2 TLN2 ENSG00000259727 LACTB MGC15885 GC15P069436
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MGC15885 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the MGC15885 gene promoter:

Genomic Locations for MGC15885 Gene

Genomic Locations for MGC15885 Gene
chr15:62,637,172-62,645,291
(GRCh38/hg38)
Size:
8,120 bases
Orientation:
Minus strand
chr15:62,929,371-62,937,490
(GRCh37/hg19)

Genomic View for MGC15885 Gene

Genes around MGC15885 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MGC15885 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MGC15885 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MGC15885 Gene

Proteins for MGC15885 Gene

Post-translational modifications for MGC15885 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MGC15885 Gene

Domains & Families for MGC15885 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MGC15885 Gene

Function for MGC15885 Gene

Phenotypes From GWAS Catalog for MGC15885 Gene

Phenotypes for MGC15885 Gene

GenomeRNAi human phenotypes for MGC15885:
genes like me logo Genes that share phenotypes with MGC15885: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MGC15885 Gene

Localization for MGC15885 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MGC15885 Gene

Pathways & Interactions for MGC15885 Gene

SuperPathways for MGC15885 Gene

No Data Available

Interacting Proteins for MGC15885 Gene

Gene Ontology (GO) - Biological Process for MGC15885 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MGC15885 Gene

Drugs & Compounds for MGC15885 Gene

No Compound Related Data Available

Transcripts for MGC15885 Gene

mRNA/cDNA for MGC15885 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(4) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MGC15885 Gene

Uncharacterized protein MGC15885:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MGC15885 Gene

No ASD Table

Relevant External Links for MGC15885 Gene

GeneLoc Exon Structure for
MGC15885

Expression for MGC15885 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MGC15885 Gene

mRNA differential expression in normal tissues according to GTEx for MGC15885 Gene

This gene is overexpressed in Testis (x8.5) and Vagina (x5.2).

SOURCE GeneReport for Unigene cluster for MGC15885 Gene:

Hs.352253
genes like me logo Genes that share expression patterns with MGC15885: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MGC15885 Gene

Orthologs for MGC15885 Gene

Evolution for MGC15885 Gene

ENSEMBL:
Gene Tree for MGC15885 (if available)
TreeFam:
Gene Tree for MGC15885 (if available)

No data available for Orthologs for MGC15885 Gene

Paralogs for MGC15885 Gene

No data available for Paralogs for MGC15885 Gene

Variants for MGC15885 Gene

Sequence variations from dbSNP and Humsavar for MGC15885 Gene

SNP ID Clin Chr 15 pos Variation AA Info Type
rs1000226179 -- 62,639,036(-) A/G intron_variant
rs1000276840 -- 62,638,768(-) C/G intron_variant
rs1000520412 -- 62,646,711(-) G/C upstream_transcript_variant
rs1000603069 -- 62,637,439(-) A/T non_coding_transcript_variant
rs1000818736 -- 62,641,035(-) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for MGC15885 Gene

Variant ID Type Subtype PubMed ID
nsv1035441 CNV gain 25217958
nsv1044132 CNV gain 25217958
nsv1116079 CNV deletion 24896259

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for MGC15885 Gene

Disorders for MGC15885 Gene

Additional Disease Information for MGC15885

No disorders were found for MGC15885 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MGC15885 Gene

Publications for MGC15885 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for MGC15885 Gene

Sources for MGC15885 Gene

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