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Aliases for MGC12916 Gene

Subcategory (RNA class) for MGC12916 Gene

lncRNA

Quality Score for this RNA gene is

2

Aliases for MGC12916 Gene

  • Uncharacterized Protein MGC12916 3
  • RP11-214O1.2 5

External Ids for MGC12916 Gene

ORGUL Members for MGC12916 Gene

Previous GeneCards Identifiers for MGC12916 Gene

  • GC17U990260
  • GC17P014207

Summaries for MGC12916 Gene

GeneCards Summary for MGC12916 Gene

MGC12916 (Uncharacterized Protein MGC12916) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MGC12916 Gene

Genomics for MGC12916 Gene

Regulatory Elements for MGC12916 Gene

Enhancers for MGC12916 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F014299 1.4 FANTOM5 Ensembl ENCODE 8.6 +1.3 1300 12.0 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 HS3ST3B1 ENSG00000262786 ENSG00000266744 LINC02096 RPL23AP76 CDRT7 LOC101928475 LINC02093 CDRT8 MGC12916
GH17F014351 1.3 FANTOM5 Ensembl ENCODE 6.6 +49.3 49279 3.6 RFX1 CEBPB NR2F2 HS3ST3B1 MGC12916 GC17P014349 GC17M014360
GH17F014297 0.2 ENCODE 5.7 -6.1 -6090 1.2 ARID4B DMAP1 ZNF48 GLIS2 ZNF202 ZNF263 SP3 SP5 REST PPARG MGC12916 ENSG00000262786 HS3ST3B1
GH17F013419 1.1 Ensembl ENCODE 4.6 -882.8 -882792 2.2 ATF1 MLX ARID4B DMAP1 YY1 SLC30A9 FOS YY2 ZHX2 MIER2 CDRT15P1 MGC12916 GC17P013414 GC17P013426
GH17F014311 0.5 Ensembl ENCODE 0.4 +8.6 8561 1.0 NR2F2 MGC12916 ENSG00000266378
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around MGC12916 on UCSC Golden Path with GeneCards custom track

Genomic Location for MGC12916 Gene

Chromosome:
17
Start:
14,303,740 bp from pter
End:
14,305,745 bp from pter
Size:
2,006 bases
Orientation:
Plus strand

Genomic View for MGC12916 Gene

Genes around MGC12916 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MGC12916 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MGC12916 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MGC12916 Gene

Proteins for MGC12916 Gene

Post-translational modifications for MGC12916 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MGC12916 Gene

Domains & Families for MGC12916 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MGC12916 Gene

Function for MGC12916 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MGC12916 Gene

Localization for MGC12916 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MGC12916 Gene

Pathways & Interactions for MGC12916 Gene

SuperPathways for MGC12916 Gene

No Data Available

Interacting Proteins for MGC12916 Gene

Gene Ontology (GO) - Biological Process for MGC12916 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MGC12916 Gene

Transcripts for MGC12916 Gene

mRNA/cDNA for MGC12916 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MGC12916 Gene

Uncharacterized protein MGC12916:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MGC12916 Gene

No ASD Table

Relevant External Links for MGC12916 Gene

GeneLoc Exon Structure for
MGC12916

Expression for MGC12916 Gene

mRNA expression in normal human tissues for MGC12916 Gene

mRNA differential expression in normal tissues according to GTEx for MGC12916 Gene

This gene is overexpressed in Whole Blood (x10.9).

SOURCE GeneReport for Unigene cluster for MGC12916 Gene:

Hs.597458
genes like me logo Genes that share expression patterns with MGC12916: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MGC12916 Gene

Orthologs for MGC12916 Gene

Evolution for MGC12916 Gene

ENSEMBL:
Gene Tree for MGC12916 (if available)
TreeFam:
Gene Tree for MGC12916 (if available)

No data available for Orthologs for MGC12916 Gene

Paralogs for MGC12916 Gene

No data available for Paralogs for MGC12916 Gene

Variants for MGC12916 Gene

Sequence variations from dbSNP and Humsavar for MGC12916 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1052686 -- 14,304,113(+) GCTGC(C/G)GACTT intron-variant, nc-transcript-variant
rs111541238 -- 14,302,664(+) AGGGT(A/G)AGCCG intron-variant, upstream-variant-2KB
rs112708858 -- 14,305,415(+) ACATA(A/T)GCTAA intron-variant, nc-transcript-variant
rs112974862 -- 14,302,453(+) AGACG(A/C)TGGGA intron-variant, upstream-variant-2KB
rs113186063 -- 14,303,310(+) CCTGT(A/G)CCCAC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MGC12916 Gene

Variant ID Type Subtype PubMed ID
esv3640020 CNV loss 21293372
esv3640021 CNV gain 21293372
nsv574377 CNV gain 21841781

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for MGC12916 Gene

Disorders for MGC12916 Gene

Relevant External Links for MGC12916

Genetic Association Database (GAD)
MGC12916
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MGC12916

No disorders were found for MGC12916 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MGC12916 Gene

Publications for MGC12916 Gene

  1. A genome-wide association study identifies protein quantitative trait loci (pQTLs). (PMID: 18464913) Melzer D. … Ferrucci L. (PLoS Genet. 2008) 46 64
  2. A genome-wide association for kidney function and endocrine-related traits in the NHLBI's Framingham Heart Study. (PMID: 17903292) Hwang S.J. … Fox C.S. (BMC Med. Genet. 2007) 46 64
  3. Genome-wide association to body mass index and waist circumference: the Framingham Heart Study 100K project. (PMID: 17903300) Fox C.S. … Atwood L.D. (BMC Med. Genet. 2007) 46 64
  4. Genome-wide association of echocardiographic dimensions, brachial artery endothelial function and treadmill exercise responses in the Framingham Heart Study. (PMID: 17903301) Vasan R.S. … Benjamin E.J. (BMC Med. Genet. 2007) 46 64
  5. Framingham Heart Study genome-wide association: results for pulmonary function measures. (PMID: 17903307) Wilk J.B. … O'Connor G.T. (BMC Med. Genet. 2007) 46 64

Products for MGC12916 Gene

Sources for MGC12916 Gene

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