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Aliases for MFSD9 Gene

Aliases for MFSD9 Gene

  • Major Facilitator Superfamily Domain Containing 9 2 3

External Ids for MFSD9 Gene

Summaries for MFSD9 Gene

GeneCards Summary for MFSD9 Gene

MFSD9 (Major Facilitator Superfamily Domain Containing 9) is a Protein Coding gene. GO annotations related to this gene include transporter activity. An important paralog of this gene is SLC22A18.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MFSD9 Gene

Genomics for MFSD9 Gene

Genomic Location for MFSD9 Gene

Start:
102,714,630 bp from pter
End:
102,736,888 bp from pter
Size:
22,259 bases
Orientation:
Minus strand

Genomic View for MFSD9 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for MFSD9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MFSD9 Gene

Regulatory Elements for MFSD9 Gene

Proteins for MFSD9 Gene

  • Protein details for MFSD9 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NBP5-MFSD9_HUMAN
    Recommended name:
    Major facilitator superfamily domain-containing protein 9
    Protein Accession:
    Q8NBP5
    Secondary Accessions:
    • Q4ZG89
    • Q53TU0
    • Q96GQ4
    • Q9BRI8

    Protein attributes for MFSD9 Gene

    Size:
    474 amino acids
    Molecular mass:
    50619 Da
    Quaternary structure:
    No Data Available

neXtProt entry for MFSD9 Gene

Proteomics data for MFSD9 Gene at MOPED

Post-translational modifications for MFSD9 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for MFSD9 Gene

No data available for DME Specific Peptides for MFSD9 Gene

Domains for MFSD9 Gene

Protein Domains for MFSD9 Gene

UniProtKB/Swiss-Prot:

MFSD9_HUMAN
Family:
  • Belongs to the major facilitator superfamily.:
    • Q8NBP5
genes like me logo Genes that share domains with MFSD9: view

No data available for Gene Families for MFSD9 Gene

Function for MFSD9 Gene

Gene Ontology (GO) - Molecular Function for MFSD9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005215 transporter activity IEA --
GO:0022857 transmembrane transporter activity --
genes like me logo Genes that share ontologies with MFSD9: view

miRNA for MFSD9 Gene

miRTarBase miRNAs that target MFSD9

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for MFSD9 Gene

Localization for MFSD9 Gene

Subcellular locations from UniProtKB/Swiss-Prot for MFSD9 Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for MFSD9 Gene COMPARTMENTS Subcellular localization image for MFSD9 gene
Compartment Confidence
plasma membrane 3

Gene Ontology (GO) - Cellular Components for MFSD9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with MFSD9: view

Pathways for MFSD9 Gene

SuperPathways for MFSD9 Gene

No Data Available

Interacting Proteins for MFSD9 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000258436%0d%0a9606.ENSP00000359518%0d%0a
Selected Interacting proteins: ENSP00000258436 for MFSD9 Gene via STRING

Symbol External ID(s) Details
MRGBP

Gene Ontology (GO) - Biological Process for MFSD9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0055085 transmembrane transport IEA --
genes like me logo Genes that share ontologies with MFSD9: view

No data available for Pathways by source for MFSD9 Gene

Transcripts for MFSD9 Gene

Unigene Clusters for MFSD9 Gene

Major facilitator superfamily domain containing 9:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MFSD9 Gene

ExUns: 1a · 1b · 1c ^ 2a · 2b · 2c ^ 3a · 3b ^ 4 ^ 5 ^ 6a · 6b · 6c · 6d ^ 7a · 7b
SP1: - - - -
SP2: - -
SP3: - - - - -
SP4: -
SP5:

Relevant External Links for MFSD9 Gene

GeneLoc Exon Structure for
MFSD9
ECgene alternative splicing isoforms for
MFSD9

Expression for MFSD9 Gene

mRNA expression in normal human tissues for MFSD9 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for MFSD9 Gene

SOURCE GeneReport for Unigene cluster for MFSD9 Gene Hs.720914

genes like me logo Genes that share expressions with MFSD9: view

Orthologs for MFSD9 Gene

This gene was present in the common ancestor of animals.

Orthologs for MFSD9 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia MFSD9 36
  • 98.73 (n)
  • 97.47 (a)
MFSD9 37
  • 97 (a)
OneToOne
cow
(Bos Taurus)
Mammalia MFSD9 36
  • 76.67 (n)
  • 69.13 (a)
MFSD9 37
  • 66 (a)
OneToOne
dog
(Canis familiaris)
Mammalia MFSD9 36
  • 78.69 (n)
  • 74.56 (a)
MFSD9 37
  • 74 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Mfsd9 36
  • 76.03 (n)
  • 74.78 (a)
Mfsd9 16
Mfsd9 37
  • 72 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia MFSD9 37
  • 65 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia MFSD9 37
  • 65 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Mfsd9 36
  • 76.42 (n)
  • 73.84 (a)
chicken
(Gallus gallus)
Aves MFSD9 36
  • 65.28 (n)
  • 64.11 (a)
MFSD9 37
  • 61 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia MFSD9 37
  • 58 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia mfsd9 36
  • 60.37 (n)
  • 58.85 (a)
zebrafish
(Danio rerio)
Actinopterygii mfsd9 36
  • 60.94 (n)
  • 63.06 (a)
mfsd9 37
  • 56 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea C53B4.3 37
  • 18 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.4725 37
  • 29 (a)
OneToOne
Species with no ortholog for MFSD9:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for MFSD9 Gene

ENSEMBL:
Gene Tree for MFSD9 (if available)
TreeFam:
Gene Tree for MFSD9 (if available)

Paralogs for MFSD9 Gene

Paralogs for MFSD9 Gene

Selected SIMAP similar genes for MFSD9 Gene using alignment to 5 proteins:

genes like me logo Genes that share paralogs with MFSD9: view

Variants for MFSD9 Gene

Sequence variations from dbSNP and Humsavar for MFSD9 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type MAF
rs7835 -- 102,714,786(-) TCTAA(A/C)ACAGG utr-variant-3-prime
rs955915 -- 102,735,277(+) AAGCC(A/G)CCCTC intron-variant
rs955916 -- 102,735,320(+) ATTTG(A/G)TGAAC intron-variant
rs1051783 -- 102,716,131(-) CCACT(A/C)GTGAC utr-variant-3-prime
rs1052431 -- 102,718,510(+) ACAGC(A/G)CCCAG reference, synonymous-codon

Relevant External Links for MFSD9 Gene

HapMap Linkage Disequilibrium report
MFSD9

No data available for Structural Variations from Database of Genomic Variants (DGV) for MFSD9 Gene

Disorders for MFSD9 Gene

Relevant External Links for MFSD9

Genetic Association Database (GAD)
MFSD9
genes like me logo Genes that share disorders with MFSD9: view

No data available for UniProtKB/Swiss-Prot for MFSD9 Gene

Publications for MFSD9 Gene

  1. Signal sequence and keyword trap in silico for selection of full- length human cDNAs encoding secretion or membrane proteins from oligo- capped cDNA libraries. (PMID: 16303743) Otsuki T. … Isogai T. (DNA Res. 2005) 3 4
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  3. Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13). (PMID: 22952603) Hart A.B. … Palmer A.A. (PLoS ONE 2012) 3
  4. Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans. (PMID: 23400010) Del-Aguila J.L. … Boerwinkle E. (Pharmacogenomics J. 2013) 3
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4

Products for MFSD9 Gene

Sources for MFSD9 Gene

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