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Aliases for MFSD4A Gene

Aliases for MFSD4A Gene

  • Major Facilitator Superfamily Domain Containing 4A 2 3 5
  • Major Facilitator Superfamily Domain-Containing Protein 4 3 4
  • Major Facilitator Superfamily Domain Containing 4 2 3
  • MFSD4 3 4
  • Major Facilitator Superfamily Domain-Containing Protein 4A 3
  • UNQ3064 3

External Ids for MFSD4A Gene

Previous HGNC Symbols for MFSD4A Gene

  • MFSD4

Summaries for MFSD4A Gene

GeneCards Summary for MFSD4A Gene

MFSD4A (Major Facilitator Superfamily Domain Containing 4A) is a Protein Coding gene. An important paralog of this gene is MFSD4B.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MFSD4A Gene

Genomics for MFSD4A Gene

Regulatory Elements for MFSD4A Gene

Enhancers for MFSD4A Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G205543 1.4 Ensembl ENCODE dbSUPER 25.4 -25.0 -24991 1.7 PKNOX1 FOXA2 ARID4B DMAP1 BRCA1 SLC30A9 GLIS2 FOS ZNF263 SP5 MFSD4A RNU2-19P CDK18 RNU6-418P LOC100420878 ELK4 LOC105371700 GC01M205361
GH01G205667 1.9 FANTOM5 Ensembl ENCODE dbSUPER 10.6 +101.5 101465 4.8 HDGF FOXA2 ARID4B SIN3A YY1 FOS MXD4 JUNB REST PPARG SLC45A3 RAB29 RNU6-418P NUCKS1 ELK4 LOC100420878 MFSD4A CDK18 PM20D1 LOC105371701
GH01G205293 2 FANTOM5 Ensembl ENCODE dbSUPER 9.8 -269.6 -269605 12.4 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766 TMCC2 NUAK2 DSTYK CDK18 LOC101929459 MFSD4A CNTN2 TMEM81 KLHDC8A ELK4
GH01G205629 1.2 ENCODE 15.9 +62.8 62781 4.6 CREB3L1 AGO1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC TBX21 MFSD4A RAB29 RNU6-418P CDK18 NUCKS1 ELK4 PM20D1 GC01P205631 LOC100420878
GH01G205540 0.7 FANTOM5 dbSUPER 25.3 -27.8 -27822 0.4 ZFHX2 ZNF394 PRDM10 MFSD4A CDK18 RNU2-19P RNU6-418P LOC100420878 ELK4 CNTN2 TMEM81 LOC105371700
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MFSD4A on UCSC Golden Path with GeneCards custom track

Genomic Location for MFSD4A Gene

Chromosome:
1
Start:
205,568,885 bp from pter
End:
205,602,918 bp from pter
Size:
34,034 bases
Orientation:
Plus strand

Genomic View for MFSD4A Gene

Genes around MFSD4A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MFSD4A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MFSD4A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MFSD4A Gene

Proteins for MFSD4A Gene

  • Protein details for MFSD4A Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N468-MFD4A_HUMAN
    Recommended name:
    Major facilitator superfamily domain-containing protein 4A
    Protein Accession:
    Q8N468
    Secondary Accessions:
    • B7Z8X3
    • Q6UY25
    • Q8NAY0
    • Q8TCP4

    Protein attributes for MFSD4A Gene

    Size:
    514 amino acids
    Molecular mass:
    56265 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAQ88474.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for MFSD4A Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for MFSD4A Gene

Post-translational modifications for MFSD4A Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for MFSD4A Gene

Domains & Families for MFSD4A Gene

Protein Domains for MFSD4A Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

Q8N468

UniProtKB/Swiss-Prot:

MFD4A_HUMAN :
  • Belongs to the major facilitator superfamily.
Family:
  • Belongs to the major facilitator superfamily.
genes like me logo Genes that share domains with MFSD4A: view

No data available for Gene Families for MFSD4A Gene

Function for MFSD4A Gene

Gene Ontology (GO) - Molecular Function for MFSD4A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005355 glucose transmembrane transporter activity IBA --
genes like me logo Genes that share ontologies with MFSD4A: view
genes like me logo Genes that share phenotypes with MFSD4A: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for MFSD4A Gene

Localization for MFSD4A Gene

Subcellular locations from UniProtKB/Swiss-Prot for MFSD4A Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for MFSD4A gene
Compartment Confidence
plasma membrane 3

Gene Ontology (GO) - Cellular Components for MFSD4A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with MFSD4A: view

Pathways & Interactions for MFSD4A Gene

SuperPathways for MFSD4A Gene

No Data Available

Interacting Proteins for MFSD4A Gene

Selected Interacting proteins: Q8N468-MFD4A_HUMAN for MFSD4A Gene via IID

Gene Ontology (GO) - Biological Process for MFSD4A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006810 transport IEA --
GO:0055085 transmembrane transport IEA --
GO:1904659 glucose transmembrane transport IEA --
genes like me logo Genes that share ontologies with MFSD4A: view

No data available for Pathways by source and SIGNOR curated interactions for MFSD4A Gene

Drugs & Compounds for MFSD4A Gene

No Compound Related Data Available

Transcripts for MFSD4A Gene

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MFSD4A Gene

No ASD Table

Relevant External Links for MFSD4A Gene

GeneLoc Exon Structure for
MFSD4A
ECgene alternative splicing isoforms for
MFSD4A

Expression for MFSD4A Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

NURSA nuclear receptor signaling pathways regulating expression of MFSD4A Gene:

MFSD4A

Evidence on tissue expression from TISSUES for MFSD4A Gene

  • Nervous system(4.9)
  • Kidney(4.3)
  • Stomach(2.4)
genes like me logo Genes that share expression patterns with MFSD4A: view

Primer Products

No data available for mRNA expression in normal human tissues , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for MFSD4A Gene

Orthologs for MFSD4A Gene

This gene was present in the common ancestor of chordates.

Orthologs for MFSD4A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia MFSD4 34 35
  • 99.47 (n)
dog
(Canis familiaris)
Mammalia MFSD4 34 35
  • 90.79 (n)
cow
(Bos Taurus)
Mammalia MFSD4 34 35
  • 88.89 (n)
mouse
(Mus musculus)
Mammalia Mfsd4 34 35
  • 87.45 (n)
Mfsd4a 16
rat
(Rattus norvegicus)
Mammalia Mfsd4 34
  • 86.11 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia MFSD4 35
  • 78 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia MFSD4 35
  • 72 (a)
OneToOne
chicken
(Gallus gallus)
Aves MFSD4 34 35
  • 76.33 (n)
lizard
(Anolis carolinensis)
Reptilia MFSD4 35
  • 70 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia mfsd4 34
  • 62.98 (n)
zebrafish
(Danio rerio)
Actinopterygii mfsd4a 34 35
  • 62.82 (n)
mfsd4b 35
  • 49 (a)
OneToMany
zgc66461 34
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 20 (a)
OneToOne
Species where no ortholog for MFSD4A was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for MFSD4A Gene

ENSEMBL:
Gene Tree for MFSD4A (if available)
TreeFam:
Gene Tree for MFSD4A (if available)

Paralogs for MFSD4A Gene

Paralogs for MFSD4A Gene

genes like me logo Genes that share paralogs with MFSD4A: view

Variants for MFSD4A Gene

Sequence variations from dbSNP and Humsavar for MFSD4A Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000004555 -- 205,582,395(+) TACTC(-/AT)GTGGG intron-variant
rs1000034645 -- 205,572,856(+) AAAAT(A/G)TATGT intron-variant
rs1000250374 -- 205,591,261(+) ATGGA(C/T)TGCTT intron-variant
rs1000280364 -- 205,603,150(+) TTCCC(C/T)ATTAC intron-variant, downstream-variant-500B
rs1000281579 -- 205,590,942(+) ACTAT(C/T)CCTAT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for MFSD4A Gene

Variant ID Type Subtype PubMed ID
nsv549044 CNV loss 21841781

Variation tolerance for MFSD4A Gene

Residual Variation Intolerance Score: 21.6% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 9.60; 89.04% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for MFSD4A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MFSD4A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for MFSD4A Gene

Disorders for MFSD4A Gene

Relevant External Links for MFSD4A

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MFSD4A
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MFSD4A

No disorders were found for MFSD4A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MFSD4A Gene

Publications for MFSD4A Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  3. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PMID: 12975309) Clark H.F. … Gray A.M. (Genome Res. 2003) 3 4 64
  4. The full-ORF clone resource of the German cDNA consortium. (PMID: 17974005) Bechtel S. … Schupp I. (BMC Genomics 2007) 4 64
  5. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 4 64

Products for MFSD4A Gene

Sources for MFSD4A Gene

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