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Aliases for MFSD12 Gene

Aliases for MFSD12 Gene

  • Major Facilitator Superfamily Domain Containing 12 2 3 5
  • C19orf28 3 4
  • Major Facilitator Superfamily Domain-Containing Protein 12 3
  • Chromosome 19 Open Reading Frame 28 2
  • PP3501 3

External Ids for MFSD12 Gene

Previous HGNC Symbols for MFSD12 Gene

  • C19orf28

Summaries for MFSD12 Gene

GeneCards Summary for MFSD12 Gene

MFSD12 (Major Facilitator Superfamily Domain Containing 12) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MFSD12 Gene

Genomics for MFSD12 Gene

Regulatory Elements for MFSD12 Gene

Enhancers for MFSD12 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19F003525 0.9 FANTOM5 Ensembl ENCODE 33.1 +36.6 36580 23.7 HDGF PKNOX1 ARID4B SIN3A GLI4 ZNF2 ZNF121 ZNF143 KLF13 ZNF263 MFSD12 C19orf71 FZR1 PIP5K1C S1PR4 GNA15 PIAS4 GC19P003535 PIR52859
GH19F003517 1.3 FANTOM5 Ensembl ENCODE 32.4 +54.3 54285 4.4 HDGF ATF1 PKNOX1 ARNT CREB3L1 SIN3A GATA2 FOS NCOA1 REST MFSD12 C19orf71 FZR1 ENSG00000252408 GC19M003522
GH19F003504 0.2 ENCODE 30.9 +65.8 65844 7.8 HDGF PKNOX1 MLX CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 MFSD12 C19orf71 FZR1 ENSG00000252408 GC19M003522
GH19F003570 1.1 FANTOM5 ENCODE 20.3 +0.2 155 7.0 HDGF PKNOX1 ZFP64 SIN3A ARID4B ZNF2 ZNF143 FOS KLF13 ZNF263 MFSD12 HMG20B ENSG00000267980 GIPC3
GH19F003477 0.8 ENCODE 14 +94.0 93968 4.9 HDGF PKNOX1 ARID4B DMAP1 ZNF48 SLC30A9 SP3 SP5 NFYC MXD4 CACTIN MFSD12 CACTIN-AS1 ZNF77 APBA3 ENSG00000269807 SMIM24 LOC105372247 ENSG00000279599
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around MFSD12 on UCSC Golden Path with GeneCards custom track

Promoters for MFSD12 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000342091 990 2201 HDGF PKNOX1 SIN3A ARID4B ZNF2 ZNF143 FOS KLF13 ZNF263 SP3

Genomic Location for MFSD12 Gene

Chromosome:
19
Start:
3,538,261 bp from pter
End:
3,574,290 bp from pter
Size:
36,030 bases
Orientation:
Minus strand

Genomic View for MFSD12 Gene

Genes around MFSD12 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MFSD12 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MFSD12 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MFSD12 Gene

Proteins for MFSD12 Gene

  • Protein details for MFSD12 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6NUT3-MFS12_HUMAN
    Recommended name:
    Major facilitator superfamily domain-containing protein 12
    Protein Accession:
    Q6NUT3
    Secondary Accessions:
    • A8MXP7
    • D6W615
    • E9PAJ8
    • Q8N459

    Protein attributes for MFSD12 Gene

    Size:
    480 amino acids
    Molecular mass:
    52075 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for MFSD12 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for MFSD12 Gene

Post-translational modifications for MFSD12 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for MFSD12 Gene

Domains & Families for MFSD12 Gene

Protein Domains for MFSD12 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for MFSD12 Gene

Graphical View of Domain Structure for InterPro Entry

Q6NUT3

UniProtKB/Swiss-Prot:

MFS12_HUMAN :
  • Belongs to the major facilitator superfamily.
Family:
  • Belongs to the major facilitator superfamily.
genes like me logo Genes that share domains with MFSD12: view

No data available for Gene Families for MFSD12 Gene

Function for MFSD12 Gene

Phenotypes for MFSD12 Gene

genes like me logo Genes that share phenotypes with MFSD12: view

Animal Model Products

Inhibitory RNA Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for MFSD12 Gene

Localization for MFSD12 Gene

Subcellular locations from UniProtKB/Swiss-Prot for MFSD12 Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for MFSD12 Gene COMPARTMENTS Subcellular localization image for MFSD12 gene
Compartment Confidence
lysosome 5
vacuole 5
plasma membrane 3
mitochondrion 2
nucleus 2

Gene Ontology (GO) - Cellular Components for MFSD12 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005765 lysosomal membrane IDA 17897319
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with MFSD12: view

Pathways & Interactions for MFSD12 Gene

SuperPathways for MFSD12 Gene

No Data Available

Interacting Proteins for MFSD12 Gene

Selected Interacting proteins: Q6NUT3-MFS12_HUMAN for MFSD12 Gene via IID

Symbol External ID(s) Details
SLC39A4

Gene Ontology (GO) - Biological Process for MFSD12 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006810 transport IEA --
genes like me logo Genes that share ontologies with MFSD12: view

No data available for Pathways by source and SIGNOR curated interactions for MFSD12 Gene

Transcripts for MFSD12 Gene

Unigene Clusters for MFSD12 Gene

Major facilitator superfamily domain containing 12:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MFSD12 Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8 ^ 9 ^ 10a · 10b · 10c
SP1:
SP2: -
SP3:

Relevant External Links for MFSD12 Gene

GeneLoc Exon Structure for
MFSD12
ECgene alternative splicing isoforms for
MFSD12

Expression for MFSD12 Gene

mRNA expression in normal human tissues for MFSD12 Gene

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for MFSD12 Gene



NURSA nuclear receptor signaling pathways regulating expression of MFSD12 Gene:

MFSD12

SOURCE GeneReport for Unigene cluster for MFSD12 Gene:

Hs.656901
genes like me logo Genes that share expression patterns with MFSD12: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MFSD12 Gene

Orthologs for MFSD12 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for MFSD12 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia MFSD12 34 35
  • 99.07 (n)
cow
(Bos Taurus)
Mammalia MFSD12 35
  • 88 (a)
OneToOne
dog
(Canis familiaris)
Mammalia MFSD12 34 35
  • 86.02 (n)
mouse
(Mus musculus)
Mammalia Mfsd12 34 16 35
  • 83.33 (n)
rat
(Rattus norvegicus)
Mammalia Mfsd12 34
  • 82.61 (n)
oppossum
(Monodelphis domestica)
Mammalia MFSD12 35
  • 77 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia MFSD12 35
  • 73 (a)
OneToOne
chicken
(Gallus gallus)
Aves C28H19ORF28 34
  • 74.8 (n)
MFSD12 35
  • 66 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia mfsd12 34
  • 64.56 (n)
Str.19055 34
zebrafish
(Danio rerio)
Actinopterygii mfsd12a 35
  • 59 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP011492 34
  • 52.74 (n)
worm
(Caenorhabditis elegans)
Secernentea F16H11.1 34 35
  • 45.36 (n)
rice
(Oryza sativa)
Liliopsida Os03g0168000 34
  • 47.62 (n)
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 46 (a)
OneToOne
Species where no ortholog for MFSD12 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for MFSD12 Gene

ENSEMBL:
Gene Tree for MFSD12 (if available)
TreeFam:
Gene Tree for MFSD12 (if available)

Paralogs for MFSD12 Gene

genes like me logo Genes that share paralogs with MFSD12: view

No data available for Paralogs for MFSD12 Gene

Variants for MFSD12 Gene

Sequence variations from dbSNP and Humsavar for MFSD12 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs10403904 -- 3,542,950(+) CCTCT(C/T)CCCTC intron-variant, reference, missense
rs10406138 -- 3,537,979(+) acagc(C/T)atgca downstream-variant-500B, upstream-variant-2KB
rs10410627 -- 3,552,066(+) GCACC(C/T)GGGAA intron-variant
rs10414697 -- 3,547,576(+) CTGGC(A/C)GGGGT intron-variant
rs10414812 -- 3,547,957(+) GCCGG(C/T)GCCTC reference, missense

Structural Variations from Database of Genomic Variants (DGV) for MFSD12 Gene

Variant ID Type Subtype PubMed ID
esv1009517 CNV insertion 20482838
esv1722786 CNV insertion 17803354
nsv1129615 CNV tandem duplication 24896259
nsv470114 CNV loss 18288195
nsv953948 CNV deletion 24416366

Variation tolerance for MFSD12 Gene

Residual Variation Intolerance Score: 72% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 6.56; 77.91% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for MFSD12 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MFSD12

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for MFSD12 Gene

Disorders for MFSD12 Gene

Relevant External Links for MFSD12

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MFSD12

No disorders were found for MFSD12 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MFSD12 Gene

Publications for MFSD12 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
  3. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3 64
  4. A human interactome in three quantitative dimensions organized by stoichiometries and abundances. (PMID: 26496610) Hein M.Y. … Mann M. (Cell 2015) 3 64
  5. Novel protein pp3501 mediates the inhibitory effect of sodium butyrate on SH-SY5Y cell proliferation. (PMID: 22441875) Wang Y. … Wu J. (J. Cell. Biochem. 2012) 3 64

Products for MFSD12 Gene

Sources for MFSD12 Gene

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