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Aliases for METTL5 Gene

Aliases for METTL5 Gene

  • Methyltransferase Like 5 2 3 5
  • Methyltransferase-Like Protein 5 3
  • EC 2.1.1.- 4
  • HSPC133 3

External Ids for METTL5 Gene

Previous GeneCards Identifiers for METTL5 Gene

  • GC02M170493
  • GC02M170376
  • GC02M170666
  • GC02M162556

Summaries for METTL5 Gene

GeneCards Summary for METTL5 Gene

METTL5 (Methyltransferase Like 5) is a Protein Coding gene. Diseases associated with METTL5 include Epilepsy, Familial Temporal Lobe, 4. GO annotations related to this gene include nucleic acid binding and protein methyltransferase activity.

UniProtKB/Swiss-Prot for METTL5 Gene

  • Probable methyltransferase.

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for METTL5 Gene

Genomics for METTL5 Gene

Regulatory Elements for METTL5 Gene

Enhancers for METTL5 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02G169925 0.9 ENCODE 16.9 -101.3 -101333 0.7 HDAC1 HDGF PKNOX1 CBX3 ARNT CHAMP1 TCF12 ZNF121 GATA2 ZBTB11 METTL5 UBR3 GC02P169970 GC02P169866
GH02G169798 1.1 ENCODE 12 +25.5 25517 2.8 HDGF CREB3L1 ARID4B SIN3A DMAP1 YY1 ZNF143 ZNF207 KLF13 SP3 UBR3 METTL5 SSB PHOSPHO2 GC02P169805
GH02G169528 1.1 ENCODE dbSUPER 10.5 +296.5 296516 0.2 HDAC1 CTCF SAP130 ARNT WRNIP1 ARID4B ZNF2 RAD21 CHAMP1 ZKSCAN1 CYB5AP2 SSB METTL5 UBR3 FASTKD1 GC02M169527
GH02G170013 1.5 VISTA ENCODE 7.3 -189.1 -189090 1.8 PKNOX1 ATF1 ARNT TCF12 ZNF766 CBX5 ELK1 GATA2 NCOA1 REST METTL5 UBR3 GC02P169970 LOC100421689
GH02G169709 1 ENCODE 10.7 +113.4 113383 4.1 ATF1 ZNF766 GATA2 ELK1 FOS KLF13 CAVIN1 ZNF592 MEF2D CREB3 PHOSPHO2 SSB CCDC173 CYB5AP2 METTL5 UBR3 GC02P169728 KLHL23
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around METTL5 on UCSC Golden Path with GeneCards custom track

Promoters for METTL5 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000126027 331 1601 HDGF CREB3L1 ARID4B SIN3A DMAP1 SLC30A9 CBX5 ZNF143 ZNF207 KLF13

Genomic Location for METTL5 Gene

Chromosome:
2
Start:
169,810,081 bp from pter
End:
169,824,931 bp from pter
Size:
14,851 bases
Orientation:
Minus strand

Genomic View for METTL5 Gene

Genes around METTL5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
METTL5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for METTL5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for METTL5 Gene

Proteins for METTL5 Gene

  • Protein details for METTL5 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9NRN9-METL5_HUMAN
    Recommended name:
    Methyltransferase-like protein 5
    Protein Accession:
    Q9NRN9
    Secondary Accessions:
    • D3DPC9
    • Q9NVX1

    Protein attributes for METTL5 Gene

    Size:
    209 amino acids
    Molecular mass:
    23719 Da
    Quaternary structure:
    No Data Available

neXtProt entry for METTL5 Gene

Post-translational modifications for METTL5 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for METTL5 Gene

Domains & Families for METTL5 Gene

Gene Families for METTL5 Gene

Suggested Antigen Peptide Sequences for METTL5 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9NRN9

UniProtKB/Swiss-Prot:

METL5_HUMAN :
  • Belongs to the methyltransferase superfamily. PrmA family.
Family:
  • Belongs to the methyltransferase superfamily. PrmA family.
genes like me logo Genes that share domains with METTL5: view

Function for METTL5 Gene

Molecular function for METTL5 Gene

UniProtKB/Swiss-Prot Function:
Probable methyltransferase.

Enzyme Numbers (IUBMB) for METTL5 Gene

Gene Ontology (GO) - Molecular Function for METTL5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding IEA --
GO:0008168 methyltransferase activity IEA --
GO:0016740 transferase activity IEA --
genes like me logo Genes that share ontologies with METTL5: view

Phenotypes for METTL5 Gene

GenomeRNAi human phenotypes for METTL5:
genes like me logo Genes that share phenotypes with METTL5: view

Animal Model Products

  • Taconic Biosciences Mouse Models for METTL5

CRISPR Products

miRNA for METTL5 Gene

miRTarBase miRNAs that target METTL5

Inhibitory RNA Products

Clone Products

No data available for Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for METTL5 Gene

Localization for METTL5 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for METTL5 gene
Compartment Confidence
cytosol 4
nucleus 3
mitochondrion 2
peroxisome 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for METTL5 Gene

Pathways & Interactions for METTL5 Gene

SuperPathways for METTL5 Gene

No Data Available

Interacting Proteins for METTL5 Gene

Gene Ontology (GO) - Biological Process for METTL5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0032259 methylation IEA --
genes like me logo Genes that share ontologies with METTL5: view

No data available for Pathways by source and SIGNOR curated interactions for METTL5 Gene

Drugs & Compounds for METTL5 Gene

No Compound Related Data Available

Transcripts for METTL5 Gene

Unigene Clusters for METTL5 Gene

Methyltransferase like 5:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for METTL5 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3a · 3b · 3c · 3d ^ 4 ^ 5 ^ 6 ^ 7 ^ 8a · 8b ^ 9a · 9b · 9c
SP1: - - - -
SP2: - - -
SP3: - -
SP4: -
SP5: - -
SP6: - - - - - -
SP7: - - -
SP8: -

Relevant External Links for METTL5 Gene

GeneLoc Exon Structure for
METTL5
ECgene alternative splicing isoforms for
METTL5

Expression for METTL5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for METTL5 Gene

Protein differential expression in normal tissues from HIPED for METTL5 Gene

This gene is overexpressed in Peripheral blood mononuclear cells (25.3), Skin (13.1), Blymphocyte (6.3), and Lymph node (6.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for METTL5 Gene



NURSA nuclear receptor signaling pathways regulating expression of METTL5 Gene:

METTL5

SOURCE GeneReport for Unigene cluster for METTL5 Gene:

Hs.470553

Evidence on tissue expression from TISSUES for METTL5 Gene

  • Nervous system(4.5)
  • Lymph node(4.3)
  • Blood(4.2)
  • Spleen(4.2)
genes like me logo Genes that share expression patterns with METTL5: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for METTL5 Gene

Orthologs for METTL5 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for METTL5 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia METTL5 34 35
  • 99.84 (n)
dog
(Canis familiaris)
Mammalia METTL5 34 35
  • 93.78 (n)
cow
(Bos Taurus)
Mammalia METTL5 34 35
  • 93.46 (n)
mouse
(Mus musculus)
Mammalia Mettl5 34 16 35
  • 91.55 (n)
rat
(Rattus norvegicus)
Mammalia Mettl5 34
  • 89.79 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia METTL5 35
  • 89 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia METTL5 35
  • 86 (a)
OneToOne
chicken
(Gallus gallus)
Aves METTL5 34 35
  • 78.53 (n)
lizard
(Anolis carolinensis)
Reptilia METTL5 35
  • 78 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia mettl5 34
  • 74.43 (n)
zebrafish
(Danio rerio)
Actinopterygii mettl5 34 35
  • 71.71 (n)
fruit fly
(Drosophila melanogaster)
Insecta CG9666 34 35
  • 57.97 (n)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP000172 34
  • 54.75 (n)
worm
(Caenorhabditis elegans)
Secernentea CELE_C38D4.9 34
  • 56.19 (n)
C38D4.9 35
  • 43 (a)
OneToOne
thale cress
(Arabidopsis thaliana)
eudicotyledons AT4G28830 34
  • 57.38 (n)
soybean
(Glycine max)
eudicotyledons Gma.6728 34
rice
(Oryza sativa)
Liliopsida Os06g0162600 34
  • 56.55 (n)
sea squirt
(Ciona savignyi)
Ascidiacea CSA.1427 35
  • 57 (a)
OneToOne
Species where no ortholog for METTL5 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for METTL5 Gene

ENSEMBL:
Gene Tree for METTL5 (if available)
TreeFam:
Gene Tree for METTL5 (if available)

Paralogs for METTL5 Gene

Pseudogenes.org Pseudogenes for METTL5 Gene

genes like me logo Genes that share paralogs with METTL5: view

No data available for Paralogs for METTL5 Gene

Variants for METTL5 Gene

Sequence variations from dbSNP and Humsavar for METTL5 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1000062870 -- 169,812,221(+) AATAA(C/T)TACTT intron-variant, downstream-variant-500B
rs1000117530 -- 169,818,871(+) CAGTC(C/T)CTTAC intron-variant
rs1000226919 -- 169,819,308(+) CACAC(-/TT)TTCTA intron-variant
rs1000350487 -- 169,824,868(+) CGCAC(C/T)TCTGG utr-variant-5-prime
rs1000399055 -- 169,812,515(+) TAAAA(C/T)AAAAG intron-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for METTL5 Gene

Variant ID Type Subtype PubMed ID
esv3584166 CNV loss 25503493
nsv1011368 CNV loss 25217958
nsv10201 CNV loss 18304495
nsv3026 CNV deletion 18451855
nsv583606 CNV loss 21841781
nsv583607 CNV gain 21841781
nsv583608 CNV gain 21841781

Variation tolerance for METTL5 Gene

Residual Variation Intolerance Score: 51.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.26; 40.62% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for METTL5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
METTL5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for METTL5 Gene

Disorders for METTL5 Gene

MalaCards: The human disease database

(1) MalaCards diseases for METTL5 Gene - From: DISEASES

Disorder Aliases PubMed IDs
epilepsy, familial temporal lobe, 4
  • familial temporal lobe epilepsy 4
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for METTL5

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
METTL5
genes like me logo Genes that share disorders with METTL5: view

No data available for UniProtKB/Swiss-Prot and Genatlas for METTL5 Gene

Publications for METTL5 Gene

  1. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PMID: 15815621) Hillier L.W. … Wilson R.K. (Nature 2005) 3 4 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  4. Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells. (PMID: 11042152) Zhang Q.-H. … Chen Z. (Genome Res. 2000) 2 3 64
  5. Panorama of ancient metazoan macromolecular complexes. (PMID: 26344197) Wan C. … Emili A. (Nature 2015) 3 64

Products for METTL5 Gene

Sources for METTL5 Gene

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