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Aliases for METTL2A Gene

Aliases for METTL2A Gene

  • Methyltransferase Like 2A 2 3
  • METTL2 3 4
  • Methyltransferase-Like Protein 2A 3
  • EC 2.1.1.- 4

External Ids for METTL2A Gene

Summaries for METTL2A Gene

GeneCards Summary for METTL2A Gene

METTL2A (Methyltransferase Like 2A) is a Protein Coding gene. GO annotations related to this gene include tRNA (cytosine) methyltransferase activity. An important paralog of this gene is METTL8.

UniProtKB/Swiss-Prot for METTL2A Gene

  • Probable S-adenosyl-L-methionine-dependent methyltransferase that mediates 3-methylcytidine modification of some tRNAs.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for METTL2A Gene

Genomics for METTL2A Gene

Genomic Location for METTL2A Gene

Start:
62,423,867 bp from pter
End:
62,450,822 bp from pter
Size:
26,956 bases
Orientation:
Plus strand

Genomic View for METTL2A Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for METTL2A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for METTL2A Gene

Regulatory Elements for METTL2A Gene

Proteins for METTL2A Gene

  • Protein details for METTL2A Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96IZ6-MET2A_HUMAN
    Recommended name:
    Methyltransferase-like protein 2A
    Protein Accession:
    Q96IZ6
    Secondary Accessions:
    • A6NNC4
    • Q9H9G9
    • Q9NUI8
    • Q9P0B5

    Protein attributes for METTL2A Gene

    Size:
    378 amino acids
    Molecular mass:
    43537 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAB14260.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for METTL2A Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for METTL2A Gene

Proteomics data for METTL2A Gene at MOPED

Post-translational modifications for METTL2A Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for METTL2A Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for METTL2A Gene

Domains for METTL2A Gene

Protein Domains for METTL2A Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

MET2A_HUMAN
Family:
  • Belongs to the methyltransferase superfamily. METL family.:
    • Q96IZ6
genes like me logo Genes that share domains with METTL2A: view

No data available for Gene Families for METTL2A Gene

Function for METTL2A Gene

Molecular function for METTL2A Gene

UniProtKB/Swiss-Prot Function: Probable S-adenosyl-L-methionine-dependent methyltransferase that mediates 3-methylcytidine modification of some tRNAs.

Enzyme Numbers (IUBMB) for METTL2A Gene

Gene Ontology (GO) - Molecular Function for METTL2A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008168 methyltransferase activity --
GO:0016427 tRNA (cytosine) methyltransferase activity ISS --
genes like me logo Genes that share ontologies with METTL2A: view

miRNA for METTL2A Gene

No data available for Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for METTL2A Gene

Localization for METTL2A Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for METTL2A Gene COMPARTMENTS Subcellular localization image for METTL2A gene
Compartment Confidence
cytosol 3
mitochondrion 1
nucleus 1
peroxisome 1

No data available for Gene Ontology (GO) - Cellular Components for METTL2A Gene

Pathways for METTL2A Gene

SuperPathways for METTL2A Gene

No Data Available

Interacting Proteins for METTL2A Gene

Gene Ontology (GO) - Biological Process for METTL2A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008152 metabolic process --
GO:0030488 tRNA methylation ISS --
genes like me logo Genes that share ontologies with METTL2A: view

No data available for Pathways by source for METTL2A Gene

Transcripts for METTL2A Gene

Unigene Clusters for METTL2A Gene

Methyltransferase like 2A:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for METTL2A Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b
SP1:
SP2:

Relevant External Links for METTL2A Gene

GeneLoc Exon Structure for
METTL2A
ECgene alternative splicing isoforms for
METTL2A

Expression for METTL2A Gene

mRNA expression in normal human tissues for METTL2A Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for METTL2A Gene

SOURCE GeneReport for Unigene cluster for METTL2A Gene Hs.381204

genes like me logo Genes that share expressions with METTL2A: view

Orthologs for METTL2A Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for METTL2A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia METTL2A 36
  • 98.94 (n)
  • 98.14 (a)
METTL2A 37
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia METTL2 37
  • 84 (a)
OneToMany
METTL2B 36
  • 87.02 (n)
  • 86.13 (a)
dog
(Canis familiaris)
Mammalia -- 37
  • 63 (a)
OneToMany
METTL2A 36
  • 88.89 (n)
  • 88.62 (a)
mouse
(Mus musculus)
Mammalia Mettl2 36
  • 83.06 (n)
  • 81.35 (a)
Mettl2 37
  • 76 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 37
  • 74 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 37
  • 66 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Mettl2b 36
  • 83.11 (n)
  • 82.04 (a)
chicken
(Gallus gallus)
Aves METTL2 37
  • 65 (a)
OneToMany
METTL2A 36
  • 70.31 (n)
  • 69.19 (a)
lizard
(Anolis carolinensis)
Reptilia -- 37
  • 60 (a)
OneToMany
African clawed frog
(Xenopus laevis)
Amphibia Xl.5270 36
tropical clawed frog
(Silurana tropicalis)
Amphibia mettl2b 36
  • 68.11 (n)
  • 70.68 (a)
Str.3463 36
zebrafish
(Danio rerio)
Actinopterygii Dr.25461 36
mettl2a 36
  • 70.72 (n)
  • 74.14 (a)
mettl2a 37
  • 66 (a)
OneToMany
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP005973 36
  • 56.37 (n)
  • 56.37 (a)
fruit fly
(Drosophila melanogaster)
Insecta metl 36
  • 57.45 (n)
  • 56.36 (a)
metl 37
  • 49 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea CELE_Y53F4B.42 36
  • 54.9 (n)
  • 51.4 (a)
Y53F4B.42 37
  • 48 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes ABP140 37
  • 21 (a)
OneToMany
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0F11385g 36
  • 50.96 (n)
  • 49.64 (a)
bread mold
(Neurospora crassa)
Ascomycetes NCU04647 36
  • 51.27 (n)
  • 44.36 (a)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes SPBC21C3.07c 36
  • 52.89 (n)
  • 47.23 (a)
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.4466 36
Species with no ortholog for METTL2A:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for METTL2A Gene

ENSEMBL:
Gene Tree for METTL2A (if available)
TreeFam:
Gene Tree for METTL2A (if available)

Paralogs for METTL2A Gene

Paralogs for METTL2A Gene

Selected SIMAP similar genes for METTL2A Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with METTL2A: view

Variants for METTL2A Gene

Sequence variations from dbSNP and Humsavar for METTL2A Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
rs896143 -- 62,443,172(+) gctca(A/G)gacca intron-variant
rs1053119 -- 62,426,438(+) AAGGA(C/T)TGGTT reference, synonymous-codon
rs1053125 -- 62,448,633(+) GTGGA(C/T)CGCCG synonymous-codon, reference
rs1053126 -- 62,448,657(+) CGAGG(A/G)AAGCA reference, synonymous-codon
rs1053127 -- 62,448,728(+) CAGCT(A/G)AGAGG synonymous-codon, reference

Structural Variations from Database of Genomic Variants (DGV) for METTL2A Gene

Variant ID Type Subtype PubMed ID
nsv908677 CNV Gain 21882294

Relevant External Links for METTL2A Gene

HapMap Linkage Disequilibrium report
METTL2A

Disorders for METTL2A Gene

No disorders were found for METTL2A Gene.

No data available for UniProtKB/Swiss-Prot for METTL2A Gene

Publications for METTL2A Gene

  1. DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage. (PMID: 16625196) Zody M.C. … Nusbaum C. (Nature 2006) 3 4
  2. Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells. (PMID: 11042152) Zhang Q.-H. … Chen Z. (Genome Res. 2000) 3 4
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4

Products for METTL2A Gene

Sources for METTL2A Gene

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