Aliases for METTL16 Gene
Aliases for METTL16 Gene
External Ids for METTL16 Gene
- HGNC: 28484
- Entrez Gene: 79066
- Ensembl: ENSG00000127804
- UniProtKB: Q86W50
Previous HGNC Symbols for METTL16 Gene
- METT10D
Previous GeneCards Identifiers for METTL16 Gene
- GC17M002319
- GC17M002316
Summaries for METTL16 Gene
GeneCards Summary for METTL16 Gene
METTL16 (Methyltransferase Like 16) is a Protein Coding gene. Gene Ontology (GO) annotations related to this gene include 23S rRNA (adenine(1618)-N(6))-methyltransferase activity.
UniProtKB/Swiss-Prot for METTL16 Gene
-
RNA N6-methyltransferase that methylates adenosine residues of a subset of RNAs and plays a key role in S-adenosyl-L-methionine homeostasis by regulating expression of MAT2A transcripts (PubMed:28525753). Able to N6-methylate a subset of mRNAs and U6 small nuclear RNAs (U6 snRNAs) (PubMed:28525753). In contrast to the METTL3-METTL14 heterodimer, only able to methylate a limited number of RNAs: requires both a 5UACAGAGAA-3 nonamer sequence and a specific RNA structure (PubMed:28525753). In presence of S-adenosyl-L-methionine, binds the 3-UTR region of MAT2A mRNA and specifically N6-methylates the first hairpin of MAT2A mRNA, leading to intron retention and preventing MAT2A mRNA splicing (PubMed:28525753). In S-adenosyl-L-methionine-limiting conditions, binds the 3-UTR region of MAT2A mRNA but stalls due to the lack of a methyl donor, leading to stimulate splicing of the MAT2A retained intron, and promoting expression of MAT2A (PubMed:28525753). In addition to mRNAs, also able to mediate N6-methylation of U6 small nuclear RNA (U6 snRNA): specifically N6-methylates adenine in position 43 of U6 snRNAs (PubMed:28525753). Specifically binds the 3-end of the MALAT1 long non-coding RNA (PubMed:27872311).
Additional gene information for METTL16 Gene
No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for METTL16 Gene
Genomics for METTL16 Gene
GeneHancer (GH) Regulatory Elements for METTL16 Gene
Regulatory Element Products
Genomic Locations for METTL16 Gene
- chr17:2,405,562-2,511,906
- (GRCh38/hg38)
- Size:
- 106,345 bases
- Orientation:
- Minus strand
- chr17:2,308,856-2,415,200
- (GRCh37/hg19)
Genomic View for METTL16 Gene
- Cytogenetic band:
-
- 17p13.3 by Ensembl
- 17p13.3 by Entrez Gene
- 17p13.3 by HGNC


RefSeq DNA sequence for METTL16 Gene
Proteins for METTL16 Gene
-
Protein details for METTL16 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q86W50-MET16_HUMAN
- Recommended name:
- U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase
- Protein Accession:
- Q86W50
- D3DTI8
- Q86TE5
- Q96T16
- Q9BVG7
Protein attributes for METTL16 Gene
- Size:
- 562 amino acids
- Molecular mass:
- 63621 Da
- Quaternary structure:
- No Data Available
- SequenceCaution:
-
- Sequence=BAB55094.1; Type=Erroneous termination; Positions=505; Note=Translated as Lys.; Evidence={ECO:0000305}; Sequence=CAD89999.2; Type=Frameshift; Positions=424; Evidence={ECO:0000305};
Protein Expression for METTL16 Gene
Post-translational modifications for METTL16 Gene
Other Protein References for METTL16 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
- Novus Biologicals Antibodies for METTL16
-
Abcam antibodies for METTL16
- Invitrogen Antibodies for METTL16
- Search GeneTex for Antibodies for METTL16
Protein Products
-
OriGene Purified Proteins for METTL16
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- antibodies-online: Search results for 3 available METTL16 Proteins ranked by validation data
- Compare Top METTL16 Proteins
-
Quality Products:
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Assay Products
No data available for DME Specific Peptides for METTL16 Gene
Domains & Families for METTL16 Gene
Gene Families for METTL16 Gene
- HGNC:
- Human Protein Atlas (HPA):
-
- Predicted intracellular proteins
Protein Domains for METTL16 Gene
- InterPro:
- ProtoNet:
Suggested Antigen Peptide Sequences for METTL16 Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
Q86W50UniProtKB/Swiss-Prot:
MET16_HUMAN :- The VCR (vertebrate conserved) regions bind the first hairpin of MAT2A mRNAs and regulate MAT2A splicing.
- Belongs to the methyltransferase superfamily. METTL16/RlmF family.
- Domain:
-
- The VCR (vertebrate conserved) regions bind the first hairpin of MAT2A mRNAs and regulate MAT2A splicing.
- Family:
-
- Belongs to the methyltransferase superfamily. METTL16/RlmF family.
Function for METTL16 Gene
Molecular function for METTL16 Gene
- UniProtKB/Swiss-Prot CatalyticActivity:
- S-adenosyl-L-methionine + adenine(43) in U6 snRNA = S-adenosyl-L-homocysteine + N(6)-methyladenine(43) in U6 snRNA.
- UniProtKB/Swiss-Prot CatalyticActivity:
- S-adenosyl-L-methionine + m(7)G(5)pppAm = S-adenosyl-L-homocysteine + m(7)G(5)pppm(6)Am.
- UniProtKB/Swiss-Prot Function:
- RNA N6-methyltransferase that methylates adenosine residues of a subset of RNAs and plays a key role in S-adenosyl-L-methionine homeostasis by regulating expression of MAT2A transcripts (PubMed:28525753). Able to N6-methylate a subset of mRNAs and U6 small nuclear RNAs (U6 snRNAs) (PubMed:28525753). In contrast to the METTL3-METTL14 heterodimer, only able to methylate a limited number of RNAs: requires both a 5UACAGAGAA-3 nonamer sequence and a specific RNA structure (PubMed:28525753). In presence of S-adenosyl-L-methionine, binds the 3-UTR region of MAT2A mRNA and specifically N6-methylates the first hairpin of MAT2A mRNA, leading to intron retention and preventing MAT2A mRNA splicing (PubMed:28525753). In S-adenosyl-L-methionine-limiting conditions, binds the 3-UTR region of MAT2A mRNA but stalls due to the lack of a methyl donor, leading to stimulate splicing of the MAT2A retained intron, and promoting expression of MAT2A (PubMed:28525753). In addition to mRNAs, also able to mediate N6-methylation of U6 small nuclear RNA (U6 snRNA): specifically N6-methylates adenine in position 43 of U6 snRNAs (PubMed:28525753). Specifically binds the 3-end of the MALAT1 long non-coding RNA (PubMed:27872311).
Enzyme Numbers (IUBMB) for METTL16 Gene
Phenotypes From GWAS Catalog for METTL16 Gene
GO ID | Qualified GO term | Evidence | PubMed IDs |
---|---|---|---|
GO:0003723 | RNA binding | IDA | 27872311 |
GO:0008168 | methyltransferase activity | IEA | -- |
GO:0016422 | mRNA (2-O-methyladenosine-N6-)-methyltransferase activity | IEA,IDA | 28525753 |
GO:0016740 | transferase activity | IEA | -- |
GO:0030629 | U6 snRNA 3-end binding | IDA | 28525753 |
Phenotypes for METTL16 Gene
- MGI mutant phenotypes for METTL16:
- inferred from 1 alleles
- GenomeRNAi human phenotypes for METTL16:
Animal Models for METTL16 Gene
- MGI Knock Outs for METTL16:
-
- Mettl16 tm1b(KOMP)Mbp
Animal Model Products
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-
-
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-
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CRISPR Products
-
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- Overview of 71 available METTL16 gene related products
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-
Vectors and viruses for KO, Activation, Repression, and more
-
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miRNA for METTL16 Gene
- miRTarBase miRNAs that target METTL16
-
- hsa-mir-26b-5p (MIRT029350)
- hsa-mir-193b-3p (MIRT041591)
- hsa-mir-423-3p (MIRT042576)
- hsa-mir-92a-3p (MIRT049235)
- hsa-mir-1178-3p (MIRT614545)
- hsa-mir-3941 (MIRT614546)
- hsa-mir-4643 (MIRT614547)
- hsa-mir-603 (MIRT614548)
- hsa-mir-362-3p (MIRT614549)
- hsa-mir-329-3p (MIRT614550)
- hsa-mir-8485 (MIRT614551)
- hsa-mir-587 (MIRT664733)
- hsa-mir-3692-3p (MIRT664734)
- hsa-mir-3156-3p (MIRT664735)
- hsa-mir-1260b (MIRT664736)
- hsa-mir-1260a (MIRT664737)
- hsa-mir-188-3p (MIRT664738)
- hsa-mir-6509-3p (MIRT664739)
- hsa-mir-4436b-5p (MIRT664740)
- hsa-mir-3119 (MIRT664741)
- hsa-mir-876-5p (MIRT664742)
- hsa-mir-3167 (MIRT664743)
- hsa-mir-627-3p (MIRT664744)
- hsa-mir-6777-3p (MIRT664745)
miRNA Products
- Search ViGene Biosciences for METTL16
Inhibitory RNA Products
- Origene shrna, sirna, and RNAi products in human, mouse, rat for METTL16
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- genomics-online: shRNA clones - Search results for 71 available METTL16 gene related products
- Overview of 71 available METTL16 gene related products
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ViGene Biosciences ready-to-package AAV shRNAs for METTL16 gene
Clone Products
- Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat
- VectorBuilder custom plasmid, inducible vectors for METTL16
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for METTL16
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Applied Biological Materials Clones for METTL16
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
Cell Line Products
-
ViGene Biosciences adenoviral particle packaged cDNA for METTL16 gene
-
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-
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No data available for Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for METTL16 Gene
Localization for METTL16 Gene
Subcellular locations from UniProtKB/Swiss-Prot for METTL16 Gene
- Nucleus.
- Nucleoplasm (3)
- Cytosol (2)
GO ID | Qualified GO term | Evidence | PubMed IDs |
---|---|---|---|
GO:0005634 | nucleus | IDA,IBA | 27872311 |
Pathways & Interactions for METTL16 Gene
Interacting Proteins for METTL16 Gene
GO ID | Qualified GO term | Evidence | PubMed IDs |
---|---|---|---|
GO:0006397 | mRNA processing | IEA | -- |
GO:0008380 | RNA splicing | IEA | -- |
GO:0010608 | posttranscriptional regulation of gene expression | IDA | 28525753 |
GO:0032259 | methylation | IEA | -- |
GO:0048024 | regulation of mRNA splicing, via spliceosome | IDA | 28525753 |
No data available for Pathways by source and SIGNOR curated interactions for METTL16 Gene
Transcripts for METTL16 Gene
mRNA/cDNA for METTL16 Gene
- (4) REFSEQ mRNAs :
- (9) Additional mRNA sequences :
- (198) Selected AceView cDNA sequences:
- (10) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for METTL16 Gene
CRISPR Products
-
OriGene CRISPR knockouts for METTL16
- genomics-online: gRNA clones - Search results for 71 available METTL16 gene related products
- Overview of 71 available METTL16 gene related products
- Applied Biological Materials CRISPR for METTL16
-
Vectors and viruses for KO, Activation, Repression, and more
-
Santa Cruz Biotechnology (SCBT) CRISPR for METTL16
- GenScript: Design CRISPR guide RNA sequences for METTL16
miRNA Products
- Search ViGene Biosciences for METTL16
Inhibitory RNA Products
- Origene shrna, sirna, and RNAi products in human, mouse, rat for METTL16
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- genomics-online: shRNA clones - Search results for 71 available METTL16 gene related products
- Overview of 71 available METTL16 gene related products
-
ViGene Biosciences ready-to-package AAV shRNAs for METTL16 gene
Clone Products
- Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat
- VectorBuilder custom plasmid, inducible vectors for METTL16
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for METTL16
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Applied Biological Materials Clones for METTL16
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
Expression for METTL16 Gene
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for METTL16 Gene
NURSA nuclear receptor signaling pathways regulating expression of METTL16 Gene:
METTL16SOURCE GeneReport for Unigene cluster for METTL16 Gene:
Hs.632237Evidence on tissue expression from TISSUES for METTL16 Gene
- Nervous system(4.7)
- Muscle(4.2)
Primer Products
-
OriGene qPCR primer pairs and template standards for METTL16
-
OriGene qPCR primer pairs for METTL16
- genomics-online: primer clones - Search results for 71 available METTL16 gene related products
- Overview of 71 available METTL16 gene related products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for METTL16 Gene
Orthologs for METTL16 Gene
This gene was present in the common ancestor of animals.
Organism | Taxonomy | Gene | Similarity | Type | Details |
---|---|---|---|---|---|
chimpanzee (Pan troglodytes) |
Mammalia | METTL16 33 34 |
|
||
dog (Canis familiaris) |
Mammalia | METTL16 33 34 |
|
||
cow (Bos Taurus) |
Mammalia | METTL16 33 34 |
|
||
-- 34 |
|
OneToMany | |||
mouse (Mus musculus) |
Mammalia | Mettl16 33 16 34 |
|
||
oppossum (Monodelphis domestica) |
Mammalia | METTL16 34 |
|
OneToOne | |
platypus (Ornithorhynchus anatinus) |
Mammalia | METTL16 34 |
|
OneToOne | |
chicken (Gallus gallus) |
Aves | METTL16 33 34 |
|
||
lizard (Anolis carolinensis) |
Reptilia | METTL16 34 |
|
OneToOne | |
tropical clawed frog (Silurana tropicalis) |
Amphibia | mettl16 33 |
|
||
Str.3947 33 |
|
||||
African clawed frog (Xenopus laevis) |
Amphibia | Xl.7647 33 |
|
||
zebrafish (Danio rerio) |
Actinopterygii | mettl16 33 34 |
|
||
rainbow trout (Oncorhynchus mykiss) |
Actinopterygii | Omy.2774 33 |
|
||
fruit fly (Drosophila melanogaster) |
Insecta | CG7544 33 34 |
|
||
African malaria mosquito (Anopheles gambiae) |
Insecta | AgaP_AGAP011889 33 |
|
||
worm (Caenorhabditis elegans) |
Secernentea | mett-10 33 34 |
|
- Species where no ortholog for METTL16 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rat (Rattus norvegicus)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- wheat (Triticum aestivum)
Paralogs for METTL16 Gene
No data available for Paralogs for METTL16 Gene
Variants for METTL16 Gene
SNP ID | Clin | Chr 17 pos | Variation | AA Info | Type |
---|---|---|---|---|---|
rs1000002512 | -- | 2,449,497(-) | C/T | intron_variant | |
rs1000010457 | -- | 2,452,732(-) | A/G | intron_variant | |
rs1000050927 | -- | 2,492,754(-) | A/G | intron_variant | |
rs1000138064 | -- | 2,449,140(-) | C/G | intron_variant | |
rs1000152506 | -- | 2,487,968(-) | G/A | intron_variant |
Variant ID | Type | Subtype | PubMed ID |
---|---|---|---|
esv22012 | CNV | loss | 19812545 |
esv2669015 | CNV | deletion | 23128226 |
esv2675053 | CNV | deletion | 23128226 |
esv3554000 | CNV | deletion | 23714750 |
esv3639709 | CNV | loss | 21293372 |
esv3639710 | CNV | loss | 21293372 |
esv3892947 | CNV | gain | 25118596 |
nsv1063109 | CNV | gain | 25217958 |
nsv1066055 | CNV | gain | 25217958 |
nsv1109041 | CNV | deletion | 24896259 |
nsv1110917 | OTHER | inversion | 24896259 |
nsv1113841 | CNV | deletion | 24896259 |
nsv111844 | CNV | deletion | 16902084 |
nsv1144785 | CNV | deletion | 24896259 |
nsv574224 | CNV | gain | 21841781 |
nsv819217 | CNV | loss | 19587683 |
nsv833338 | CNV | loss | 17160897 |
Additional Variant Information for METTL16 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- METTL16
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for METTL16 Gene
Disorders for METTL16 Gene
Additional Disease Information for METTL16
No disorders were found for METTL16 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for METTL16 Gene
Publications for METTL16 Gene
- The U6 snRNA m6A Methyltransferase METTL16 Regulates SAM Synthetase Intron Retention. (PMID: 28525753) Pendleton KE … Conrad NK (Cell 2017) 2 3 4 58
- Human METTL16 is a N6-methyladenosine (m6A) methyltransferase that targets pre-mRNAs and various non-coding RNAs. (PMID: 29051200) Warda AS … Bohnsack MT (EMBO reports 2017) 2 3 58
- Methyltransferase-like protein 16 binds the 3'-terminal triple helix of MALAT1 long noncoding RNA. (PMID: 27872311) Brown JA … Steitz JA (Proceedings of the National Academy of Sciences of the United States of America 2016) 3 4 58
- The ybiN gene of Escherichia coli encodes adenine-N6 methyltransferase specific for modification of A1618 of 23 S ribosomal RNA, a methylated residue located close to the ribosomal exit tunnel. (PMID: 18021804) Sergiev PV … Dontsova OA (Journal of molecular biology 2008) 2 3 58
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
Products for METTL16 Gene
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- VectorBuilder custom plasmid, inducible vectors for METTL16
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for METTL16
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- antibodies-online: Search results for 43 available METTL16 Antibodies ranked by validation data
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- antibodies-online: Search results for available METTL16 related products ranked by validation data
- antibodies-online: Search results for 3 available METTL16 Proteins ranked by validation data
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- Quality Products:
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- ViGene Biosciences adenoviral particle packaged cDNA for METTL16 gene
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- Search ViGene Biosciences for METTL16
- genomics-online: cdna clones - Search results for 71 available METTL16 gene related products
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- Overview of 71 available METTL16 gene related products
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- Overview of 71 available METTL16 gene related products
Sources for METTL16 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
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