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Aliases for METTL15 Gene

Aliases for METTL15 Gene

  • Methyltransferase Like 15 2 3 5
  • Methyltransferase 5 Domain-Containing Protein 1 3 4
  • Methyltransferase 5 Domain Containing 1 2 3
  • METT5D1 3 4
  • Probable S-Adenosyl-L-Methionine-Dependent Methyltransferase METT5D1 3
  • Putative S-Adenosyl-L-Methionine-Dependent Methyltransferase METT5D1 3
  • Probable Methyltransferase-Like Protein 15 3
  • EC 2.1.1.- 4

External Ids for METTL15 Gene

Previous HGNC Symbols for METTL15 Gene

  • METT5D1

Summaries for METTL15 Gene

GeneCards Summary for METTL15 Gene

METTL15 (Methyltransferase Like 15) is a Protein Coding gene. GO annotations related to this gene include methyltransferase activity and rRNA (cytosine-N4-)-methyltransferase activity.

UniProtKB/Swiss-Prot for METTL15 Gene

  • Probable S-adenosyl-L-methionine-dependent methyltransferase.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for METTL15 Gene

Genomics for METTL15 Gene

Regulatory Elements for METTL15 Gene

Enhancers for METTL15 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11F028105 1.6 FANTOM5 ENCODE 7.8 +0.4 361 6.2 HDGF PKNOX1 ARNT CREB3L1 WRNIP1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 LINC00678 ENSG00000255094 CBX3P1 RPS25P1 ENSG00000249867 METTL15 BDNF KIF18A GC11M028129
GH11F028122 0.7 Ensembl ENCODE 5.5 +15.2 15242 1.1 JUND FOS MIR610 BDNF METTL15 GC11M028129 KIF18A
GH11F028086 1.1 ENCODE 0.3 -21.4 -21364 1.7 HDGF PKNOX1 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 ZNF207 MIR610 METTL15 GC11M028056
GH11F028104 0.2 Ensembl 0.8 -3.9 -3948 0.2 METTL15 GC11M028056
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around METTL15 on UCSC Golden Path with GeneCards custom track

Promoters for METTL15 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

Genomic Location for METTL15 Gene

28,108,248 bp from pter
28,527,041 bp from pter
418,794 bases
Plus strand

Genomic View for METTL15 Gene

Genes around METTL15 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
METTL15 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for METTL15 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for METTL15 Gene

Proteins for METTL15 Gene

  • Protein details for METTL15 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Probable methyltransferase-like protein 15
    Protein Accession:
    Secondary Accessions:
    • A8MRS5
    • B7WNU2
    • Q3MHD3
    • Q8N601
    • Q8NBA7

    Protein attributes for METTL15 Gene

    407 amino acids
    Molecular mass:
    46121 Da
    Quaternary structure:
    No Data Available
    • Sequence=AAH30997.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

    Alternative splice isoforms for METTL15 Gene


neXtProt entry for METTL15 Gene

Post-translational modifications for METTL15 Gene

  • Ubiquitination at Lys 352 and Lys 381
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for METTL15 Gene

Domains & Families for METTL15 Gene

Gene Families for METTL15 Gene

Protein Domains for METTL15 Gene

Suggested Antigen Peptide Sequences for METTL15 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry



  • Belongs to the methyltransferase superfamily. RsmH family.
  • Belongs to the methyltransferase superfamily. RsmH family.
genes like me logo Genes that share domains with METTL15: view

Function for METTL15 Gene

Molecular function for METTL15 Gene

UniProtKB/Swiss-Prot Function:
Probable S-adenosyl-L-methionine-dependent methyltransferase.

Enzyme Numbers (IUBMB) for METTL15 Gene

Gene Ontology (GO) - Molecular Function for METTL15 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016740 transferase activity IEA --
GO:0071424 rRNA (cytosine-N4-)-methyltransferase activity IBA --
genes like me logo Genes that share ontologies with METTL15: view

Phenotypes for METTL15 Gene

GenomeRNAi human phenotypes for METTL15:
genes like me logo Genes that share phenotypes with METTL15: view

Animal Model Products

Inhibitory RNA Products

Flow Cytometry Products

No data available for Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for METTL15 Gene

Localization for METTL15 Gene

Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for METTL15 gene
Compartment Confidence
nucleus 4
cytosol 3
plasma membrane 2
mitochondrion 2

Gene Ontology (GO) - Cellular Components for METTL15 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with METTL15: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for METTL15 Gene

Pathways & Interactions for METTL15 Gene

SuperPathways for METTL15 Gene

No Data Available

Interacting Proteins for METTL15 Gene

Gene Ontology (GO) - Biological Process for METTL15 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0032259 methylation IEA --
GO:0070475 rRNA base methylation IBA --
genes like me logo Genes that share ontologies with METTL15: view

No data available for Pathways by source and SIGNOR curated interactions for METTL15 Gene

Drugs & Compounds for METTL15 Gene

(1) Drugs for METTL15 Gene - From: HMDB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
S-Adenosylmethionine Approved Nutra 0
genes like me logo Genes that share compounds with METTL15: view

Transcripts for METTL15 Gene

Unigene Clusters for METTL15 Gene

Methyltransferase like 15:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for METTL15 Gene

ExUns: 1 ^ 2a · 2b ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9a · 9b ^ 10 ^ 11a · 11b
SP1: - - - - -
SP2: - - -
SP3: - - - -

Relevant External Links for METTL15 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for METTL15 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for METTL15 Gene

Protein differential expression in normal tissues from HIPED for METTL15 Gene

This gene is overexpressed in Bone marrow mesenchymal stem cell (39.7), Cervix (14.2), and Plasma (6.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for METTL15 Gene

NURSA nuclear receptor signaling pathways regulating expression of METTL15 Gene:


SOURCE GeneReport for Unigene cluster for METTL15 Gene:

genes like me logo Genes that share expression patterns with METTL15: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for METTL15 Gene

Orthologs for METTL15 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for METTL15 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia METTL15 34 35
  • 99.59 (n)
(Canis familiaris)
Mammalia METTL15 34 35
  • 88.7 (n)
(Bos Taurus)
Mammalia METTL15 34 35
  • 88.62 (n)
(Mus musculus)
Mammalia Mettl15 34 16 35
  • 80.79 (n)
(Monodelphis domestica)
Mammalia METTL15 35
  • 73 (a)
(Ornithorhynchus anatinus)
Mammalia METTL15 35
  • 70 (a)
(Gallus gallus)
Aves METTL15 34 35
  • 70.77 (n)
(Anolis carolinensis)
Reptilia METTL15 35
  • 76 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia mettl15 34
  • 68.18 (n)
Str.17107 34
African clawed frog
(Xenopus laevis)
Amphibia Xl.3963 34
(Danio rerio)
Actinopterygii LOC560573 34
  • 60.5 (n)
METTL15 35
  • 50 (a)
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.8699 34
fruit fly
(Drosophila melanogaster)
Insecta CG14683 34 35
  • 51.38 (n)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP002831 34
  • 50.95 (n)
thale cress
(Arabidopsis thaliana)
eudicotyledons AT5G10910 34
  • 47.04 (n)
(Oryza sativa)
Liliopsida Os02g0137600 34
  • 45.99 (n)
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 41 (a)
Species where no ortholog for METTL15 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rat (Rattus norvegicus)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for METTL15 Gene

Gene Tree for METTL15 (if available)
Gene Tree for METTL15 (if available)

Paralogs for METTL15 Gene

(1) SIMAP similar genes for METTL15 Gene using alignment to 3 proteins: Pseudogenes for METTL15 Gene

genes like me logo Genes that share paralogs with METTL15: view

No data available for Paralogs for METTL15 Gene

Variants for METTL15 Gene

Sequence variations from dbSNP and Humsavar for METTL15 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs10047455 -- 28,456,389(+) TCAGG(A/G)TGCTA intron-variant
rs10128588 -- 28,456,379(+) GATAT(G/T)TTGCT intron-variant
rs1020281 -- 28,466,977(-) GGACT(C/T)CAGGT intron-variant
rs1032090 -- 28,155,995(-) GCTAA(C/G)TCACG intron-variant
rs1032091 -- 28,270,531(-) caatg(C/T)ctcta intron-variant

Structural Variations from Database of Genomic Variants (DGV) for METTL15 Gene

Variant ID Type Subtype PubMed ID
esv2670715 CNV deletion 23128226
esv3579455 CNV loss 25503493
esv3625779 CNV loss 21293372
esv3625780 CNV loss 21293372
esv3625781 CNV loss 21293372
esv3891958 CNV gain 25118596
esv3891960 CNV loss 25118596
esv3891961 CNV loss 25118596
nsv1040043 CNV loss 25217958
nsv38603 CNV deletion 16902084
nsv553915 CNV loss 21841781
nsv832096 CNV loss 17160897
nsv951594 CNV deletion 24416366
nsv975896 CNV duplication 23825009

Variation tolerance for METTL15 Gene

Residual Variation Intolerance Score: 63.6% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 3.44; 54.71% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for METTL15 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for METTL15 Gene

Disorders for METTL15 Gene

Relevant External Links for METTL15

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for METTL15 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for METTL15 Gene

Publications for METTL15 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
  3. KCMF1 (potassium channel modulatory factor 1) Links RAD6 to UBR4 (ubiquitin N-recognin domain-containing E3 ligase 4) and lysosome-mediated degradation. (PMID: 25582440) Hong J.H. … Raught B. (Mol. Cell Proteomics 2015) 3 64
  4. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3 64
  5. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3 64

Products for METTL15 Gene

Sources for METTL15 Gene

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