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METRNL Gene

protein-coding   GIFtS: 45
GCID: GC17P081037

Meteorin, Glial Cell Differentiation Regulator-Like

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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Meteorin, Glial Cell Differentiation Regulator-Like1 2
Meteorin-Like Protein2

External Ids:    HGNC: 275841   Entrez Gene: 2842072   Ensembl: ENSG000001768457   UniProtKB: Q641Q33   

Export aliases for METRNL gene to outside databases

Previous GC identifers: GC17P078631 GC17P076439


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for METRNL Gene:
METRNL (meteorin, glial cell differentiation regulator-like) is a protein-coding gene. An important paralog of this gene is METRN.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000017.10  NT_010663.16  NT_187612.1  NC_018928.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the METRNL gene promoter:
         SRF   AML1a   SRF (504 AA)   SREBP-1c   LCR-F1   SREBP-1b   N-Myc   AREB6   SREBP-1a   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidMETRNL promoter sequence
   Search Chromatin IP Primers for METRNL

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat METRNL


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 17q25.3   Ensembl cytogenetic band:  17q25.3   HGNC cytogenetic band: 17q25.3

METRNL Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
METRNL gene location

GeneLoc information about chromosome 17         GeneLoc Exon Structure

GeneLoc location for GC17P081037:  view genomic region     (about GC identifiers)

Start:
81,037,567 bp from pter      End:
81,052,864 bp from pter
Size:
15,298 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: METRL_HUMAN, Q641Q3 (See protein sequence)
Recommended Name: Meteorin-like protein precursor  
Size: 311 amino acids; 34398 Da
Sequence caution: Sequence=AAH50568.1; Type=Erroneous initiation;
Secondary accessions: Q86VM0

Explore the universe of human proteins at neXtProt for METRNL: NX_Q641Q3

Explore proteomics data for METRNL at MOPED

Post-translational modifications: 

  • Glycosylation2 at Thr215
  • Modification sites at PhosphoSitePlus

  • See METRNL Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_001004431.1  
    ENSEMBL proteins: 
     ENSP00000315731   ENSP00000458566   ENSP00000460798   ENSP00000458275  

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    antibodies-online peptides for METRNL

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    ProtoNet protein and cluster: Q641Q3

    UniProtKB/Swiss-Prot: METRL_HUMAN, Q641Q3
    Similarity: Belongs to the meteorin family


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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         Gene Ontology (GO): 1 molecular function term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003674molecular_function ND--
         
    Find genes that share ontologies with METRNL           About GenesLikeMe


    Phenotypes:
         1 GenomeRNAi human phenotype for METRNL:
     Synthetic lethal with Ras 

    Animal Models:
       genOway: Develop your customized and physiologically relevant rodent model for METRNL

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    hsa-mir-107 (MIRT026973)

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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    METRL_HUMAN, Q641Q3: Secreted (Potential)
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    extracellular3
    cytoskeleton1
    endoplasmic reticulum1
    golgi apparatus1
    lysosome1
    mitochondrion1
    nucleus1
    plasma membrane1

    Gene Ontology (GO): 3 cellular component terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005576extracellular region ----
    GO:0005615extracellular space ISS--
    GO:0070062extracellular vesicular exosome IDA19199708

    Find genes that share ontologies with METRNL           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for METRNL
    Interactions:

        Search GeneGlobe Interaction Network for METRNL

    Gene Ontology (GO): 1 biological process term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0045444fat cell differentiation ISS--

    Find genes that share ontologies with METRNL           About GenesLikeMe



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
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      Browse compounds at ApexBio 

    Browse Tocris compounds for METRNL (METRL)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for METRNL gene: 
    NM_001004431.1  

    Unigene Cluster for METRNL:

    Meteorin, glial cell differentiation regulator-like
    Hs.378821  [show with all ESTs]
    Unigene Representative Sequence: AK093748
    5 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000320095(uc002kgh.3) ENST00000570778 ENST00000571814(uc002kgi.3)
    ENST00000571940 ENST00000574053
    miRNA
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    hsa-miR-369-3p hsa-miR-374b hsa-miR-374a hsa-miR-33b hsa-miR-33a
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    Inhib. RNA
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      QuantiFast Probe-based Assays in human, mouse, rat METRNL

    Additional mRNA sequence: 

    AF086149.1 AK093748.1 BC050568.1 BC082252.1 BC118558.1 BC118638.1 

    5 DOTS entries:

    DT.40120570  DT.100691512  DT.120935027  DT.100060301  DT.100783269 

    Selected AceView cDNA sequences (see all 111):

    AA454519 NM_001004431 BM710224 AI813302 CF264891 BQ575901 BU733639 BQ772108 
    AI879700 BC082252 AI798485 BM671640 BU681631 BM710375 BQ027062 BM671791 
    CF264755 BM709698 CB850650 BQ014457 BU734204 CF272400 CD369635 BM771530 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    METRNL expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: AGCTTCCAGC
    METRNL Expression
    About this image


    METRNL expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database
     selected tissues (see all 5) fully expand
     
     Neural Tube (Nervous System)    fully expand to see all 5 entries
             Floor Plate Cells Spinal Floor Plate
             Metencephalon
     
     Bone (Muscoskeletal System)    fully expand to see all 3 entries
             Zeugopod Long Bone
     
     Neurons
             Glycinergic Amacrine Cells Inner Nuclear Layer
     
     Eye (Sensory Organs)
             Glycinergic Amacrine Cells Inner Nuclear Layer
     
     Brain (Nervous System)
             Medulla Oblongata
    METRNL Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    METRNL Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.378821
        Custom PCR Arrays for METRNL
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for METRNL

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of chordates.

    Orthologs for METRNL gene from Selected species (see all 12)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Metrnl1 , 5 meteorin, glial cell differentiation regulator-like1, 5 78.45(n)1
    78.57(a)1
      11 (86.89 cM)5
    2100291  NM_144797.31  NP_659046.11 
     1217015445 
    chicken
    (Gallus gallus)
    Aves METRNL1 meteorin, glial cell differentiation regulator-like 72.46(n)
    75.1(a)
      417332  XM_415598.4  XP_415598.2 
    lizard
    (Anolis carolinensis)
    Reptilia METRNL6
    meteorin, glial cell differentiation regulator-lik...
    68(a)
    1 ↔ 1
    2(107923143-107957013)
    African clawed frog
    (Xenopus laevis)
    Amphibia 480501722   -- 75.42(n)    48050172 
    zebrafish
    (Danio rerio)
    Actinopterygii Dr.172002 Danio rerio mRNA similar to cDNA sequence BC019776 more 76.3(n)    BC046006.1 


    ENSEMBL Gene Tree for METRNL (if available)
    TreeFam Gene Tree for METRNL (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for METRNL gene
    METRN2  
    1 SIMAP similar gene for METRNL using alignment to 4 protein entries:     METRL_HUMAN (see all proteins):
    METRN

    Find genes that share paralogs with METRNL           About GenesLikeMe



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for METRNL (see all 478)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 17 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs64168561,2
    C,F,H--81035574(+) AGAGGT/CGGCCT 1 -- us2k122Minor allele frequency- C:0.20NS EA NA WA CSA 2344
    rs713765481,2
    C,F--81035656(+) ATGTCC/TGCATC 1 -- us2k13Minor allele frequency- T:0.05NA 124
    rs1388933261,2
    --81035703(+) CCGTGA/GTGTGA 1 -- us2k10--------
    rs75016721,2
    C,F,A,H--81035823(+) AAGCCG/ACAGGT 1 -- us2k118Minor allele frequency- A:0.39NS EA NA WA 2342
    rs1900314581,2
    --81035834(+) CCCTTC/TCCACA 1 -- us2k10--------
    rs75018521,2
    C,F--81035930(+) GCAGAC/GGGGGG 1 -- us2k17Minor allele frequency- G:0.41NA WA EA 366
    rs609757251,2
    C,F--81035979(+) CCAGAC/TCTTGA 1 -- us2k15Minor allele frequency- T:0.42WA NA EA 362
    rs586339061,2
    C,F--81036061(+) GAACAG/CATCCT 1 -- us2k15Minor allele frequency- C:0.42WA NA EA 362
    rs1823198461,2
    --81036096(+) CACTGC/TCATCG 1 -- us2k10--------
    rs1173258781,2
    F--81036175(+) TTTGCC/TGGTGA 1 -- us2k11Minor allele frequency- T:0.02EA 120

    HapMap Linkage Disequilibrium report for METRNL (81037567 - 81052864 bp)

    Structural Variations
         Database of Genomic Variants (DGV) Selected variations for METRNL (see all 12):    About this table    
    Variant IDTypeSubtypePubMed ID
    dgv3374n71CNV Loss21882294
    dgv3372n71CNV Loss21882294
    nsv522768CNV Loss19592680
    dgv3373n71CNV Loss21882294
    nsv909283CNV Loss21882294
    nsv828147CNV Loss20364138
    nsv529045CNV Loss19592680
    nsv828149CNV Gain20364138
    nsv819941CNV Gain19587683
    nsv828150CNV Gain20364138

    Site Specific Mutation Identification with PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for METRNL gene integrated from 10 sources:
    (articles sorted by number of sources associating them with METRNL)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Proteomic analysis of human parotid gland exosomes by multidimensional protein identification technology (MudPIT). (PubMed id 19199708)1 Gonzalez-Begne M....Yates J.R. (J. Proteome Res. 2009)
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1 Ota T.... Sugano S. (Nat. Genet. 2004)
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 284207 HGNC: 27584 AceView: LOC284207 Ensembl:ENSG00000176845 euGenes: HUgn284207
    ECgene: METRNL H-InvDB: METRNL

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for METRNL Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for METRNL gene:
    Search GeneIP for patents involving METRNL

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, eBioscience, antibodies-online, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from genOway)
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    GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014 , 21 Aug 2014 , 8 Sep 2014 , 7 Oct 2014

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