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Aliases for METAP1 Gene

Aliases for METAP1 Gene

  • Methionyl Aminopeptidase 1 2 3 5
  • Peptidase M 1 3 4
  • MetAP 1 3 4
  • MAP 1 3 4
  • Methionine Aminopeptidase 1 3
  • EC 3.4.11.18 4
  • Peptidase M 2
  • KIAA0094 4
  • MetAP1A 3
  • MAP1A 3

External Ids for METAP1 Gene

Previous GeneCards Identifiers for METAP1 Gene

  • GC04P100162
  • GC04P100309
  • GC04P100375
  • GC04P100274
  • GC04P099916
  • GC04P095655

Summaries for METAP1 Gene

GeneCards Summary for METAP1 Gene

METAP1 (Methionyl Aminopeptidase 1) is a Protein Coding gene. Among its related pathways are Metabolism of fat-soluble vitamins and Signaling by GPCR. GO annotations related to this gene include hydrolase activity and metalloexopeptidase activity. An important paralog of this gene is METAP1D.

UniProtKB/Swiss-Prot for METAP1 Gene

  • Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Required for normal progression through the cell cycle.

Gene Wiki entry for METAP1 Gene

No data available for Entrez Gene Summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for METAP1 Gene

Genomics for METAP1 Gene

Regulatory Elements for METAP1 Gene

Enhancers for METAP1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04F098994 1.1 ENCODE 0.8 +1.3 1269 5.1 HDGF PKNOX1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 CBX5 ZNF143 ENSG00000272777 LOC100507053 EIF4E ADH5 RNU7-149P ADH1A ADH4 METAP1 MIR3684
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around METAP1 on UCSC Golden Path with GeneCards custom track

Promoters for METAP1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001246047 280 2601 HDGF PKNOX1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 CBX5 ZNF143

Genomic Location for METAP1 Gene

Chromosome:
4
Start:
98,995,620 bp from pter
End:
99,062,813 bp from pter
Size:
67,194 bases
Orientation:
Plus strand

Genomic View for METAP1 Gene

Genes around METAP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
METAP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for METAP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for METAP1 Gene

Proteins for METAP1 Gene

  • Protein details for METAP1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P53582-MAP11_HUMAN
    Recommended name:
    Methionine aminopeptidase 1
    Protein Accession:
    P53582
    Secondary Accessions:
    • B4E2E6

    Protein attributes for METAP1 Gene

    Size:
    386 amino acids
    Molecular mass:
    43215 Da
    Cofactor:
    Name=Co(2+); Xref=ChEBI:CHEBI:48828; Name=Zn(2+); Xref=ChEBI:CHEBI:29105; Name=Mn(2+); Xref=ChEBI:CHEBI:29035; Name=Fe(2+); Xref=ChEBI:CHEBI:29033;
    Quaternary structure:
    • Associates with the 60S ribosomal subunit of the 80S translational complex.
    SequenceCaution:
    • Sequence=AAH30054.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=BAA07679.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for METAP1 Gene

neXtProt entry for METAP1 Gene

Post-translational modifications for METAP1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Antibody Products

  • R&D Systems Antibodies for METAP1 (Methionine Aminopeptidase 1/METAP1)

No data available for DME Specific Peptides for METAP1 Gene

Domains & Families for METAP1 Gene

Gene Families for METAP1 Gene

Suggested Antigen Peptide Sequences for METAP1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P53582

UniProtKB/Swiss-Prot:

MAP11_HUMAN :
  • Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
Family:
  • Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
genes like me logo Genes that share domains with METAP1: view

Function for METAP1 Gene

Molecular function for METAP1 Gene

UniProtKB/Swiss-Prot CatalyticActivity:
Release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
UniProtKB/Swiss-Prot Function:
Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Required for normal progression through the cell cycle.

Enzyme Numbers (IUBMB) for METAP1 Gene

Gene Ontology (GO) - Molecular Function for METAP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004177 aminopeptidase activity TAS 16386852
GO:0008233 peptidase activity IEA --
GO:0008235 metalloexopeptidase activity IEA,TAS 16386852
GO:0016787 hydrolase activity IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with METAP1: view
genes like me logo Genes that share phenotypes with METAP1: view

Animal Model Products

miRNA for METAP1 Gene

miRTarBase miRNAs that target METAP1

Inhibitory RNA Products

Flow Cytometry Products

No data available for Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for METAP1 Gene

Localization for METAP1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for METAP1 Gene

Cytoplasm.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for METAP1 Gene COMPARTMENTS Subcellular localization image for METAP1 gene
Compartment Confidence
cytosol 5
nucleus 5
mitochondrion 2
plasma membrane 2
chloroplast 1
cytoskeleton 1
golgi apparatus 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for METAP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA --
GO:0005737 cytoplasm TAS 14532271
GO:0005829 cytosol TAS --
GO:0022626 cytosolic ribosome IEA --
genes like me logo Genes that share ontologies with METAP1: view

Pathways & Interactions for METAP1 Gene

genes like me logo Genes that share pathways with METAP1: view

Gene Ontology (GO) - Biological Process for METAP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006417 regulation of translation TAS 16386852
GO:0006508 proteolysis IEA --
GO:0018206 peptidyl-methionine modification TAS 16386852
GO:0022400 regulation of rhodopsin mediated signaling pathway TAS --
GO:0031365 N-terminal protein amino acid modification TAS 16386852
genes like me logo Genes that share ontologies with METAP1: view

No data available for SIGNOR curated interactions for METAP1 Gene

Drugs & Compounds for METAP1 Gene

(7) Drugs for METAP1 Gene - From: DrugBank, HMDB, and Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Nitroxoline Approved Pharma 0
Ovalicin Experimental Pharma Target 0
3-[(2,2-DIMETHYLPROPANOYL)AMINO]-N-1,3-THIAZOL-2-YLPYRIDINE-2-CARBOXAMIDE Experimental Pharma Target 0
5-CHLORO-6-METHYL-N-(2-PHENYLETHYL)-2-PYRIDIN-2-YLPYRIMIDIN-4-AMINE Experimental Pharma Target 0
TERT-BUTYL {2-[(1,3-THIAZOL-2-YLAMINO)CARBONYL]PYRIDIN-3-YL}CARBAMATE Experimental Pharma Target 0

(1) Additional Compounds for METAP1 Gene - From: HMDB

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
sodium
  • Sodium
  • Sodium ion
7440-23-5
genes like me logo Genes that share compounds with METAP1: view

Transcripts for METAP1 Gene

Unigene Clusters for METAP1 Gene

Methionyl aminopeptidase 1:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for METAP1 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b · 7c ^ 8 ^ 9 ^ 10a · 10b · 10c · 10d ^ 11a · 11b ^ 12 ^ 13a · 13b · 13c
SP1: - - -
SP2: - -
SP3:
SP4:
SP5: - -
SP6: -
SP7: -

Relevant External Links for METAP1 Gene

GeneLoc Exon Structure for
METAP1
ECgene alternative splicing isoforms for
METAP1

Expression for METAP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for METAP1 Gene

Protein differential expression in normal tissues from HIPED for METAP1 Gene

This gene is overexpressed in Bone (11.8), Peripheral blood mononuclear cells (11.2), and Heart (10.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for METAP1 Gene



Protein tissue co-expression partners for METAP1 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of METAP1 Gene:

METAP1

SOURCE GeneReport for Unigene cluster for METAP1 Gene:

Hs.480364
genes like me logo Genes that share expression patterns with METAP1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for METAP1 Gene

Orthologs for METAP1 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for METAP1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia METAP1 34 35
  • 99.65 (n)
dog
(Canis familiaris)
Mammalia METAP1 34 35
  • 94.35 (n)
oppossum
(Monodelphis domestica)
Mammalia METAP1 35
  • 94 (a)
OneToOne
cow
(Bos Taurus)
Mammalia METAP1 34 35
  • 92.92 (n)
mouse
(Mus musculus)
Mammalia Metap1 34 16 35
  • 90.93 (n)
rat
(Rattus norvegicus)
Mammalia Metap1 34
  • 89.46 (n)
chicken
(Gallus gallus)
Aves METAP1 34 35
  • 84.5 (n)
lizard
(Anolis carolinensis)
Reptilia METAP1 35
  • 92 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia metap1 34
  • 80.21 (n)
African clawed frog
(Xenopus laevis)
Amphibia Xl.29016 34
zebrafish
(Danio rerio)
Actinopterygii metap1 34 35
  • 75.58 (n)
wufc84e12 34
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.6937 34
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP003700 34
  • 62.02 (n)
fruit fly
(Drosophila melanogaster)
Insecta CG13630 34 35
  • 61.65 (n)
worm
(Caenorhabditis elegans)
Secernentea map-1 34 35
  • 59.64 (n)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes MAP1 34 35 37
  • 59.15 (n)
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0D18436g 34
  • 56.71 (n)
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_AGL122W 34
  • 55.56 (n)
thale cress
(Arabidopsis thaliana)
eudicotyledons MAP1A 34
  • 60.87 (n)
soybean
(Glycine max)
eudicotyledons Gma.10853 34
rice
(Oryza sativa)
Liliopsida Os10g0508400 34
  • 59.02 (n)
Os.6154 34
barley
(Hordeum vulgare)
Liliopsida Hv.11208 34
wheat
(Triticum aestivum)
Liliopsida Ta.7894 34
corn
(Zea mays)
Liliopsida Zm.16004 34
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes fma1 34
  • 57.46 (n)
bread mold
(Neurospora crassa)
Ascomycetes NCU06923 34
  • 56.46 (n)
Species where no ortholog for METAP1 was found in the sources mined by GeneCards:
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)

Evolution for METAP1 Gene

ENSEMBL:
Gene Tree for METAP1 (if available)
TreeFam:
Gene Tree for METAP1 (if available)

Paralogs for METAP1 Gene

Paralogs for METAP1 Gene

(2) SIMAP similar genes for METAP1 Gene using alignment to 7 proteins:

Pseudogenes.org Pseudogenes for METAP1 Gene

genes like me logo Genes that share paralogs with METAP1: view

Variants for METAP1 Gene

Sequence variations from dbSNP and Humsavar for METAP1 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs10002449 -- 99,014,014(+) ctttc(C/T)gaata intron-variant
rs10016255 -- 98,998,633(+) GGTCC(C/T)TGGCC intron-variant
rs10016708 -- 99,020,039(+) ttcca(C/T)tgtgg intron-variant
rs10018631 -- 99,034,728(+) CTTCC(A/G)TATCA intron-variant
rs10034645 -- 99,027,159(+) aggga(A/G)aattt intron-variant

Structural Variations from Database of Genomic Variants (DGV) for METAP1 Gene

Variant ID Type Subtype PubMed ID
esv2728030 CNV deletion 23290073
esv2728031 CNV deletion 23290073
esv2728032 CNV deletion 23290073
esv3601551 CNV gain 21293372
nsv1002927 CNV gain 25217958
nsv4438 CNV insertion 18451855

Variation tolerance for METAP1 Gene

Residual Variation Intolerance Score: 33.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.87; 18.17% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for METAP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
METAP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for METAP1 Gene

Disorders for METAP1 Gene

Relevant External Links for METAP1

Genetic Association Database (GAD)
METAP1
Human Genome Epidemiology (HuGE) Navigator
METAP1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
METAP1

No disorders were found for METAP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for METAP1 Gene

Publications for METAP1 Gene

  1. Prediction of the coding sequences of unidentified human genes. III. The coding sequences of 40 new genes (KIAA0081-KIAA0120) deduced by analysis of cDNA clones from human cell line KG-1. (PMID: 7788527) Nagase T. … Nomura N. (DNA Res. 1995) 2 3 4 64
  2. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 46 64
  3. Genetic variants in TPMT and COMT are associated with hearing loss in children receiving cisplatin chemotherapy. (PMID: 19898482) Ross C.J. … Hayden M.R. (Nat. Genet. 2009) 3 46 64
  4. Elucidation of the function of type 1 human methionine aminopeptidase during cell cycle progression. (PMID: 17114291) Hu X. … Liu J.O. (Proc. Natl. Acad. Sci. U.S.A. 2006) 3 4 64
  5. Structural basis for the functional differences between type I and type II human methionine aminopeptidases. (PMID: 16274222) Addlagatta A. … Matthews B.W. (Biochemistry 2005) 3 4 64

Products for METAP1 Gene

Sources for METAP1 Gene

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