MESP1 Gene
protein-coding GIFtS : 46
GCID: GC15 M090291
mesoderm posterior 1 homolog (mouse)
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Aliasesfor MESP1 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section This gene clusters with an RNA geneSubcategory (RNA class): lncRNAQuality score for the ORGUL clustered with this gene is 3 Aliases Mesoderm Posterior 1 Homolog (Mouse) 1 2 BHLHc51 Class C Basic Helix-Loop-Helix Protein 52 3 MGC106761 Mesoderm Posterior Protein 12 BHLHC53
External Ids: HGNC: 29658 1 Entrez Gene: 55897 2 Ensembl: ENSG00000166823 7 OMIM: 608689 5 UniProtKB: Q9BRJ9 3 ORGUL members: NONCODE:n338119
Export aliases for MESP1 gene to outside databases Previous GC identifers: GC15M087880 GC15M088022 GC15M088095 GC15M066406
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Summariesfor MESP1 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section UniProtKB/Swiss-Prot: MESP1_HUMAN, Q9BRJ9 Function : Transcription factor. Plays a role in the epithelialization of somitic mesoderm and in the development ofcardiac mesoderm. Defines the rostrocaudal patterning of the somites by participating in distinct Notch pathways (By similarity)
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Genomic Viewsfor MESP1 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000015.9 NC_018926.1 NT_010274.17 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the MESP1 gene promoter: HOXA9 AhR HOXA9B HTF Lmo2 Meis-1a Nkx2-5 Meis-1 Other transcription factors Search SABiosciences Chromatin IP Primers for MESP1 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat MESP1
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 15q26.1 Ensembl cytogenetic band: 15q26.1 HGNC cytogenetic band: 15q26.1 MESP1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 15 GeneLoc Exon Structure
GeneLoc location for GC15M090291: view genomic region
(about GC identifiers )
Start:
90,291,892 bp from pter
End:
90,294,541 bp from pter
Size:
2,650 bases
Orientation:
minus strand
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Proteinsfor MESP1 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: MESP1_HUMAN, Q9BRJ9 (See
protein sequence )Recommended Name: Mesoderm posterior protein 1 Size : 268 amino acids; 28501 Da
Subcellular location : Nucleus (Probable)
Miscellaneous : The N- and C-terminal domains are separated by a 2-repeat G-Q region
Secondary accessions : Q9NSF1 Q9NSF2Explore the universe of human proteins at neXtProt for MESP1: NX_Q9BRJ9 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q9BRJ9 MESP1 Protein expression data from MOPED and PaxDb : About this image REFSEQ proteins: NP_061140.1 ENSEMBL proteins: ENSP00000300057 Human Recombinant Protein Products for MESP1: Gene Ontology (GO): 1 cellular component term (GO ID links to tree view) : About this table
MESP1 for ontologies About GeneDecksing MESP1 Antibody Products: Assay Products for MESP1:
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Protein
Domains / Familiesfor MESP1 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
MESP1 for domains About GeneDecksing 1 InterPro domain/family :
Graphical View of Domain Structure for InterPro Entry Q9BRJ9 ProtoNet protein and cluster: Q9BRJ9
1 Blocks protein family : IPB001092 Basic helix-loop-helix dimerization domain bHLH UniProtKB/Swiss-Prot: MESP1_HUMAN, Q9BRJ9 Similarity : Contains 1 bHLH (basic helix-loop-helix) domain
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Functionfor MESP1 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory ,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase ,
shRNA from
OriGene ,
Sirion Biotech ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Sirion Biotech ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
Sirion Biotech ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Molecular Function: UniProtKB/Swiss-Prot Summary: MESP1_HUMAN, Q9BRJ9 Function : Transcription factor. Plays a role in the epithelialization of somitic mesoderm and in the development ofcardiac mesoderm. Defines the rostrocaudal patterning of the somites by participating in distinct Notch pathways (By similarity)
Gene Ontology (GO): 4 molecular function terms (GO ID links to tree view) : About this table
MESP1 for ontologies About GeneDecksing Phenotypes: 14 MGI mutant phenotypes (inferred from 5 alleles ) (MGI details for Mesp1) :
MESP1 for phenotypes About GeneDecksing Animal Models: Mouse knock-outs for MESP1: Mesp1 tm4Ysa Mesp1 tm3Ysa Mesp1/Mesp2 Mesp1/tm1Ysa Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for MESP1 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for MESP1OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: MESP1 (NM_018670 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for MESP1 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat MESP1
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Pathways & Interactionsfor MESP1 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for MESP1 Gene Ontology (GO): 5/33 biological process terms (GO ID links to tree view) (see all 33 ): About this table
MESP1 for ontologies About GeneDecksing
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Drugs & Compoundsfor MESP1 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for MESP1 Search CenterWatch for drugs/clinical trials and news about MESP1
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Transcriptsfor MESP1 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
Sirion Biotech ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for MESP1 gene: NM_018670.3 Unigene Cluster for MESP1:
Mesoderm posterior 1 homolog (mouse) Hs.447531 [show with all ESTs ] Unigene Representative Sequence: AL357535 2 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000300057 (uc002bol.3 ) ENST00000559894 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for MESP1 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for MESP1OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: MESP1 (NM_018670 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for MESP1 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat MESP1
Additional cDNA sequence: AL357533.1 AL357534.1 AL357535.1 AL357570.1 AL357571.1 BC006219.1
2 DOTS entries : DT.201847 DT.86853082
24/48 AceView cDNA sequences (see all 48 ):
AI160116 AI973116 BC006219 BE794535 AI361605 AI797472 NM_018670 AL357534 CK826088 AL357535 AW295958 BI759784 AW135833 AI825438 BF514903 AI096885 BM995554 BQ417147 BF526448 BM845762 AI969913 AI954630 AI635386 AI991102 GeneLoc Exon Structure 2 Alternative Splicing Database (ASD) splice patterns (SP) for MESP1 About this scheme ExUns: 1a · 1b · 1c ^ 2a · 2b SP1 :           SP2 :     -      
ECgene alternative splicing isoforms for MESP1
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Expression for MESP1 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section MESP1 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: GAGGGACCCAAbout this image MESP1 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table
See MESP1 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for MESP1 SOURCE GeneReport for Unigene cluster: Hs.447531 SABiosciences Custom PCR Arrays for MESP1 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for MESP1Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat MESP1 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat MESP1 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat MESP1
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Orthologsfor MESP1 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of chordates.
Orthologs for MESP1 gene from 3/8 species (see all 8 ) About this table
ENSEMBL Gene Tree for MESP1 (if available)TreeFam Gene Tree for MESP1 (if available)
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Paralogsfor MESP1 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for MESP1 gene MSGN1 2 MESP2 2 1 SIMAP similar gene for MESP1 using alignment to 1 protein entry: MESP1_HUMAN :MESP2
MESP1 for paralogs About GeneDecksing
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Genomic Variantsfor MESP1 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 15 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for MESP1 (90291892 - 90294541 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for MESP1: --
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing MESP1
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Disorders
/ Diseasesfor MESP1 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
MESP1 for disorders About GeneDecksing
OMIM gene information: 608689
OMIM disorders : --3 diseases for MESP1 : About MalaCards spondylocostal dysostosis dysostosis sinusitis Export disorders for MESP1 gene to outside databases
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Publicationsfor MESP1 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for MESP1 gene, integrated from 9 sources (see all 12 ): (articles sorted by number of sources associating them with MESP1) Utopia : connect your pdf to the dynamic world of online information
Transcriptional regulation of Mesp1 and Mesp2 genes: differential usage of enhancers during development. (PubMed id 11578861) 1 , 3, 9 Haraguchi S....Saga Y. (2001) MesP1: a novel basic helix-loop-helix protein expressed in the nascent mesodermal cells during mouse gastrulation. (PubMed id 8787751) 1 , 3 Saga Y....Taketo M.M. (1996) Transcription factors ETS2 and MESP1 transdifferentiat e human dermal fibroblasts into cardiac progenitors. (PubMed id 22826236) 1 Islas J.F....Schwartz R.J. (2012) MesP1 drives vertebrate cardiovascular differentiation through Dkk-1-mediated blockade of Wnt-signalling. (PubMed id 18297060) 1 David R....Franz W.M. (2008) Mutated MESP2 causes spondylocostal dysostosis in humans. (PubMed id 15122512) 2 Whittock N.V.... Turnpenny P.D. (2004) Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions. (PubMed id 15342556) 1 Suzuki Y.... Sugano S. (2004) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 2 Gerhard D.S....Malek J. (2004) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 Strausberg R.L....Marra M.A. (2002) Mesp1 coordinately regulates cardiovascular fate restriction and epithelial-mesenchymal transition in differentiating ESCs. (PubMed id 18593559) 9 Lindsley R.C....Murphy K.M. (2008) Generation of functional murine cardiac myocytes from induced pluripotent stem cells. (PubMed id 18625890) 9 Mauritz C....Martin U. (2008)
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External Searches for MESP1 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing MESP1 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing MESP1 gene
(According to HUGE )
About This Section --
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Specialized Databases showing MESP1 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for MESP1 Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for MESP1 gene: Search GeneIP for patents involving MESP1 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor MESP1 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 and Sirion Biotech , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript , LifeMap BioReagents , and Sirion Biotech , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences , In Situ Hybridization Assays from Advanced Cell Diagnostics , Animal models from inGenious Targeting Laboratory )About This Section
Browse OriGene Antibodies OriGene shRNA RFP for MESP1 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for MESP1 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for MESP1 OriGene Protein Over-expression Lysate for MESP1 Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for MESP1 Browse 3'-UTR reporter clones for miRNA target validation OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for MESP1 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for MESP1 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for MESP1 OriGene Custom Protein Services for MESP1 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat MESP1 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing MESP1 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat MESP1 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat MESP1 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat MESP1 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat MESP1
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MESP1 Proteins, Antibodies, CLIAs, and ELISAs
ThermoFisher Antibodies for MESP1
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat MESP1
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