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Aliases for MELTF Gene

Aliases for MELTF Gene

  • Melanotransferrin 2 2 3 3 5
  • Antigen P97 (Melanoma Associated) Identified By Monoclonal Antibodies 133.2 And 96.5 2 3
  • Membrane-Bound Transferrin-Like Protein 2 3
  • Melanoma-Associated Antigen P97 3 4
  • MAP97 3 4
  • MFI2 3 4
  • CD228 Antigen 4
  • CD228 3
  • MTF1 3
  • MTF 3

External Ids for MELTF Gene

Previous HGNC Symbols for MELTF Gene

  • MFI2

Summaries for MELTF Gene

Entrez Gene Summary for MELTF Gene

  • The protein encoded by this gene is a cell-surface glycoprotein found on melanoma cells. The protein shares sequence similarity and iron-binding properties with members of the transferrin superfamily. The importance of the iron binding function has not yet been identified. This gene resides in the same region of chromosome 3 as members of the transferrin superfamily. Alternative splicing results in two transcript variants. [provided by RefSeq, Jul 2008]

GeneCards Summary for MELTF Gene

MELTF (Melanotransferrin) is a Protein Coding gene. Diseases associated with MELTF include Melanoma and Chromosome 3Q29 Deletion Syndrome. Among its related pathways are Post-translational modification- synthesis of GPI-anchored proteins and Metabolism of proteins. An important paralog of this gene is TF.

UniProtKB/Swiss-Prot for MELTF Gene

  • Involved in iron cellular uptake. Seems to be internalized and then recycled back to the cell membrane. Binds a single atom of iron per subunit. Could also bind zinc.

Gene Wiki entry for MELTF Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MELTF Gene

Genomics for MELTF Gene

Regulatory Elements for MELTF Gene

Enhancers for MELTF Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G197305 1.8 FANTOM5 Ensembl ENCODE dbSUPER 6.8 -278.2 -278152 5.1 ATF1 FOS PAF1 NCOA1 JUNB TBX21 ZNF518A MAFF ATF4 SMARCA4 DLG1 MELTF GC03M197310 GC03P197299
GH03G197295 1.3 ENCODE dbSUPER 6.6 -268.3 -268315 5.2 HDGF PKNOX1 CREB3L1 ZFP64 ARID4B SIN3A ZBTB7B YY1 ZNF766 FOS DLG1 MELTF CEP19 MIR4797 DLG1-AS1
GH03G197001 1.2 ENCODE dbSUPER 6.5 +25.9 25910 4.0 HDGF PKNOX1 CREB3L1 AGO1 ELK1 ZNF143 ZNF207 REST TBX21 ZNF592 PIGZ MELTF RPSAP69 GC03P197002
GH03G197028 1.4 FANTOM5 ENCODE 5.3 -0.6 -560 4.0 HDGF PKNOX1 FOXA2 CREB3L1 ARNT AGO1 SIN3A YY1 ZNF766 CBX5 ENSG00000234742 ENSG00000230732 MELTF-AS1 LOC220729 UBXN7 RNF168 DLG1 MELTF SENP5 NRROS
GH03G197215 1.4 Ensembl ENCODE 5.3 -186.6 -186587 1.3 HNRNPUL1 HDGF PKNOX1 CREB3L1 MLX AGO1 ARID4B SIN3A DMAP1 YY1 ENSG00000234742 RNF168 UBXN7 LOC220729 MELTF-AS1 ENSG00000230732 WDR53 MELTF GC03P197175 MIR4797
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MELTF on UCSC Golden Path with GeneCards custom track

Promoters for MELTF Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000164487 316 1001 HDGF ARNT AGO1 ZNF121 GTF3C2 GLIS2 CBX5 ZNF143 KLF7 SP5

Genomic Location for MELTF Gene

Chromosome:
3
Start:
196,987,559 bp from pter
End:
197,029,816 bp from pter
Size:
42,258 bases
Orientation:
Minus strand

Genomic View for MELTF Gene

Genes around MELTF on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MELTF Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MELTF Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MELTF Gene

Proteins for MELTF Gene

  • Protein details for MELTF Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P08582-TRFM_HUMAN
    Recommended name:
    Melanotransferrin
    Protein Accession:
    P08582
    Secondary Accessions:
    • Q9BQE2

    Protein attributes for MELTF Gene

    Size:
    738 amino acids
    Molecular mass:
    80215 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for MELTF Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for MELTF Gene

Post-translational modifications for MELTF Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for MELTF Gene

No data available for DME Specific Peptides for MELTF Gene

Domains & Families for MELTF Gene

Gene Families for MELTF Gene

Protein Domains for MELTF Gene

Suggested Antigen Peptide Sequences for MELTF Gene

Graphical View of Domain Structure for InterPro Entry

P08582

UniProtKB/Swiss-Prot:

TRFM_HUMAN :
  • Belongs to the transferrin family.
Family:
  • Belongs to the transferrin family.
genes like me logo Genes that share domains with MELTF: view

Function for MELTF Gene

Molecular function for MELTF Gene

UniProtKB/Swiss-Prot Function:
Involved in iron cellular uptake. Seems to be internalized and then recycled back to the cell membrane. Binds a single atom of iron per subunit. Could also bind zinc.

Gene Ontology (GO) - Molecular Function for MELTF Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005506 iron ion binding IMP 7556058
GO:0005515 protein binding IPI 19815549
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with MELTF: view
genes like me logo Genes that share phenotypes with MELTF: view

Animal Models for MELTF Gene

MGI Knock Outs for MELTF:

Animal Model Products

  • Taconic Biosciences Mouse Models for MELTF

CRISPR Products

Inhibitory RNA Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for MELTF Gene

Localization for MELTF Gene

Subcellular locations from UniProtKB/Swiss-Prot for MELTF Gene

Isoform 1: Cell membrane; Lipid-anchor, GPI-anchor.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for MELTF gene
Compartment Confidence
plasma membrane 5
extracellular 5
peroxisome 1
lysosome 1

Gene Ontology (GO) - Cellular Components for MELTF Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IEA,TAS --
GO:0005615 extracellular space IEA --
GO:0005788 endoplasmic reticulum lumen TAS --
GO:0005886 plasma membrane TAS --
GO:0005887 integral component of plasma membrane TAS 2419904
genes like me logo Genes that share ontologies with MELTF: view

Pathways & Interactions for MELTF Gene

genes like me logo Genes that share pathways with MELTF: view

Gene Ontology (GO) - Biological Process for MELTF Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001558 NOT regulation of cell growth IMP 7556058
GO:0006501 C-terminal protein lipidation TAS --
GO:0006810 transport IEA --
GO:0006811 ion transport IEA --
GO:0010756 positive regulation of plasminogen activation IDA 16713448
genes like me logo Genes that share ontologies with MELTF: view

No data available for SIGNOR curated interactions for MELTF Gene

Drugs & Compounds for MELTF Gene

(4) Drugs for MELTF Gene - From: Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials

(3) Additional Compounds for MELTF Gene - From: Novoseek and HMDB

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
Fe2+
  • Armco iron
  • Carbonyl iron
  • FE
  • Ferrovac e
  • Hematite
15438-31-0
genes like me logo Genes that share compounds with MELTF: view

Transcripts for MELTF Gene

CRISPR Products

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for MELTF Gene

No ASD Table

Relevant External Links for MELTF Gene

GeneLoc Exon Structure for
MELTF
ECgene alternative splicing isoforms for
MELTF

Expression for MELTF Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

NURSA nuclear receptor signaling pathways regulating expression of MELTF Gene:

MELTF

mRNA Expression by UniProt/SwissProt for MELTF Gene:

P08582-TRFM_HUMAN
Tissue specificity: Found predominantly in human melanomas and in certain fetal tissues; also found in liver, epithelium, umbilical chord, placenta and sweat gland ducts.

Evidence on tissue expression from TISSUES for MELTF Gene

  • Skin(4.6)
  • Liver(4.2)
genes like me logo Genes that share expression patterns with MELTF: view

Primer Products

No data available for mRNA expression in normal human tissues , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and Phenotype-based relationships between genes and organs from Gene ORGANizer for MELTF Gene

Orthologs for MELTF Gene

This gene was present in the common ancestor of animals.

Orthologs for MELTF Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia MFI2 34 35
  • 99.02 (n)
cow
(Bos Taurus)
Mammalia MFI2 34 35
  • 89.31 (n)
dog
(Canis familiaris)
Mammalia MFI2 34 35
  • 87.31 (n)
mouse
(Mus musculus)
Mammalia Mfi2 34 35
  • 83.22 (n)
Meltf 16
rat
(Rattus norvegicus)
Mammalia Mfi2 34
  • 83.12 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia MFI2 35
  • 73 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia MFI2 35
  • 59 (a)
OneToOne
chicken
(Gallus gallus)
Aves MFI2 34 35
  • 65.21 (n)
lizard
(Anolis carolinensis)
Reptilia MFI2 35
  • 54 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia mfi2 34
  • 59.11 (n)
zebrafish
(Danio rerio)
Actinopterygii mfi2 34 35
  • 56.32 (n)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP005003 34
  • 50.41 (n)
fruit fly
(Drosophila melanogaster)
Insecta Tsf2 34 35
  • 49.57 (n)
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 40 (a)
OneToOne
Species where no ortholog for MELTF was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for MELTF Gene

ENSEMBL:
Gene Tree for MELTF (if available)
TreeFam:
Gene Tree for MELTF (if available)

Paralogs for MELTF Gene

Paralogs for MELTF Gene

genes like me logo Genes that share paralogs with MELTF: view

Variants for MELTF Gene

Sequence variations from dbSNP and Humsavar for MELTF Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000022723 -- 197,006,800(+) AGAAG(C/T)TGCTA intron-variant
rs1000036512 -- 197,013,201(+) AACCC(A/G)GAAAT intron-variant
rs1000054898 -- 197,014,950(+) AAAAA(A/G)AAAGT intron-variant
rs1000108195 -- 197,013,479(+) GAAAA(A/G)ACCTC intron-variant
rs1000190221 -- 197,031,566(+) TTTGG(A/C)AAAAC upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MELTF Gene

Variant ID Type Subtype PubMed ID
dgv8855n54 CNV gain 21841781
dgv8856n54 CNV gain+loss 21841781
dgv8857n54 CNV loss 21841781
esv2763775 CNV gain+loss 21179565
esv29143 CNV loss 19812545
esv3599293 CNV gain 21293372
nsv1003135 CNV gain 25217958
nsv1073277 CNV deletion 25765185
nsv1144060 CNV deletion 24896259
nsv475582 CNV novel sequence insertion 20440878
nsv517987 CNV loss 19592680
nsv593106 CNV loss 21841781
nsv822421 CNV loss 20364138
nsv822422 CNV loss 20364138

Variation tolerance for MELTF Gene

Residual Variation Intolerance Score: 96.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 6.25; 76.28% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for MELTF Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MELTF

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for MELTF Gene

Disorders for MELTF Gene

MalaCards: The human disease database

(3) MalaCards diseases for MELTF Gene - From: DISEASES, Novoseek, and GeneCards

Disorder Aliases PubMed IDs
melanoma
  • malignant melanoma
chromosome 3q29 deletion syndrome
  • 3q29 microdeletion syndrome
chromosome 3q29 microdeletion syndrome
  • chromosome 3q29 deletion syndrome
- elite association - COSMIC cancer census association via MalaCards
Search MELTF in MalaCards View complete list of genes associated with diseases

Relevant External Links for MELTF

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MELTF
genes like me logo Genes that share disorders with MELTF: view

No data available for UniProtKB/Swiss-Prot and Genatlas for MELTF Gene

Publications for MELTF Gene

  1. A novel iron uptake mechanism mediated by GPI-anchored human p97. (PMID: 7556058) Kennard M.L. … Jefferies W.A. (EMBO J. 1995) 3 4 22 64
  2. Transport and expression in human melanomas of a transferrin-like glycosylphosphatidylinositol-anchored protein. (PMID: 8300636) Food M.R. … Jefferies W.A. (J. Biol. Chem. 1994) 3 4 22 64
  3. Human melanotransferrin (p97) has only one functional iron-binding site. (PMID: 1544447) Baker E.N. … Hellstroem I. (FEBS Lett. 1992) 3 4 22 64
  4. Biochemical and spectroscopic studies of human melanotransferrin (MTf): electron-paramagnetic resonance evidence for a difference between the iron-binding site of MTf and other transferrins. (PMID: 18691669) Farnaud S. … Richardson D.R. (Int. J. Biochem. Cell Biol. 2008) 3 22 64
  5. Plasminogen-dependent internalization of soluble melanotransferrin involves the low-density lipoprotein receptor-related protein and annexin II. (PMID: 17570828) Michaud-Levesque J. … BAcliveau R. (Biol. Chem. 2007) 3 22 64

Products for MELTF Gene

Sources for MELTF Gene

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