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Aliases for MEIS3P1 Gene

Aliases for MEIS3P1 Gene

  • Meis Homeobox 3 Pseudogene 1 2 3 5
  • Meis1, Myeloid Ecotropic Viral Integration Site 1 Homolog 3 (Mouse) 2
  • Meis1, Myeloid Ecotropic Viral Integration Site 1 Homolog 4 (Mouse) 2
  • Meis1, Myeloid Ecotropic Viral Integration Site 1 Homolog 3 3
  • Meis1, Myeloid Ecotropic Viral Integration Site 1 Homolog 4 3
  • Putative Homeobox Protein Meis3-Like 1 3
  • Meis1 Homolog 3 (Mouse) Pseudogene 1 2
  • Meis1 Homolog 3 Pseudogene 1 3
  • Meis Homolog 3 3
  • CTD-3157E16.2 3
  • MEIS3 3
  • MEIS4 3
  • MRG2 3

External Ids for MEIS3P1 Gene

Previous HGNC Symbols for MEIS3P1 Gene

  • MEIS3
  • MEIS4

Previous GeneCards Identifiers for MEIS3P1 Gene

  • GC17P015632
  • GC17P015689
  • GC17P015691
  • GC17P015694

Summaries for MEIS3P1 Gene

Entrez Gene Summary for MEIS3P1 Gene

  • This gene appears to be a retrotransposed pseudogene based on its lack of exons compared to other family members, one of which is found on chromosome 19 (MEIS3). It does appear to be transcribed and has an ORF that may encode a protein of similar size and sequence to that encoded by MEIS3. [provided by RefSeq, Jul 2008]

GeneCards Summary for MEIS3P1 Gene

MEIS3P1 (Meis Homeobox 3 Pseudogene 1) is a Pseudogene.

Additional gene information for MEIS3P1 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MEIS3P1 Gene

Genomics for MEIS3P1 Gene

GeneHancer (GH) Regulatory Elements for MEIS3P1 Gene

Promoters and enhancers for MEIS3P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I015785 Promoter 0.8 Ensembl 550.8 -0.3 -317 1 ZNF335 GABPB1 ZSCAN4 ELF1 FOXA1 ENSG00000265519 MEIS3P1 IL6STP1 GC17P015777
GH17I016406 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 24.7 +621.1 621093 2.2 HDGF SMAD1 ZFP64 SIN3A FEZF1 YBX1 IRF4 ZNF213 ZNF207 ZNF548 PIGL PPIAP53 ENSG00000266538 NCOR1 TVP23C MPRIP-AS1 ZNF286A LOC644422 UPF3AP1 MPRIP
GH17I016484 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 16.7 +701.8 701848 8.3 HDAC1 RB1 NFIB ZSCAN4 KLF17 ZNF335 TCF12 GLIS2 SCRT2 EGR2 LRRC75A ZNF286A ENSG00000266538 PPIAP53 PIGL MPRIP-AS1 MEIS3P1 ENSG00000265519 TVP23C CDRT4
GH17I015998 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 16.1 +213.1 213130 3.1 PKNOX1 FOXA2 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 ZSWIM7 TTC19 MEIS3P1 ENSG00000265519 ZNF286A UPF3AP1 GC17M016015
GH17I015464 Enhancer 0.9 FANTOM5 dbSUPER 20.7 -321.6 -321617 0.3 ZSCAN5A ZNF146 SUZ12 ZSCAN4 ZNF133 ZNF266 ZNF175 CDC5L ZKSCAN1 ZNF791 PIR54188 NCOR1 PPIAP53 ENSG00000266538 TVP23C PIGL ZNF286A MEIS3P1 ENSG00000265519 LRRC75A-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MEIS3P1 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the MEIS3P1 gene promoter:

Genomic Locations for MEIS3P1 Gene

Genomic Locations for MEIS3P1 Gene
chr17:15,786,618-15,789,705
(GRCh38/hg38)
Size:
3,088 bases
Orientation:
Plus strand
chr17:15,689,932-15,693,019
(GRCh37/hg19)

Genomic View for MEIS3P1 Gene

Genes around MEIS3P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MEIS3P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MEIS3P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MEIS3P1 Gene

Proteins for MEIS3P1 Gene

  • Protein details for MEIS3P1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NDR6-ME3L1_HUMAN
    Recommended name:
    Putative homeobox protein Meis3-like 1
    Protein Accession:
    A6NDR6

    Protein attributes for MEIS3P1 Gene

    Size:
    274 amino acids
    Molecular mass:
    30204 Da
    Quaternary structure:
    No Data Available

neXtProt entry for MEIS3P1 Gene

Post-translational modifications for MEIS3P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MEIS3P1 Gene

Domains & Families for MEIS3P1 Gene

Gene Families for MEIS3P1 Gene

Protein Domains for MEIS3P1 Gene

Suggested Antigen Peptide Sequences for MEIS3P1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

A6NDR6

UniProtKB/Swiss-Prot:

ME3L1_HUMAN :
  • Belongs to the TALE/MEIS homeobox family.
Family:
  • Belongs to the TALE/MEIS homeobox family.
genes like me logo Genes that share domains with MEIS3P1: view

Function for MEIS3P1 Gene

Gene Ontology (GO) - Molecular Function for MEIS3P1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
genes like me logo Genes that share ontologies with MEIS3P1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for MEIS3P1 Gene

Localization for MEIS3P1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for MEIS3P1 Gene

Gene Ontology (GO) - Cellular Components for MEIS3P1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with MEIS3P1: view

No data available for Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for MEIS3P1 Gene

Pathways & Interactions for MEIS3P1 Gene

SuperPathways for MEIS3P1 Gene

No Data Available

Interacting Proteins for MEIS3P1 Gene

Gene Ontology (GO) - Biological Process for MEIS3P1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with MEIS3P1: view

No data available for Pathways by source and SIGNOR curated interactions for MEIS3P1 Gene

Drugs & Compounds for MEIS3P1 Gene

No Compound Related Data Available

Transcripts for MEIS3P1 Gene

mRNA/cDNA for MEIS3P1 Gene

(3) Additional mRNA sequences :
(47) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MEIS3P1 Gene

Meis homeobox 3 pseudogene 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MEIS3P1 Gene

No ASD Table

Relevant External Links for MEIS3P1 Gene

GeneLoc Exon Structure for
MEIS3P1
ECgene alternative splicing isoforms for
MEIS3P1

Expression for MEIS3P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MEIS3P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of MEIS3P1 Gene:

MEIS3P1

SOURCE GeneReport for Unigene cluster for MEIS3P1 Gene:

Hs.356135
genes like me logo Genes that share expression patterns with MEIS3P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MEIS3P1 Gene

Orthologs for MEIS3P1 Gene

Evolution for MEIS3P1 Gene

ENSEMBL:
Gene Tree for MEIS3P1 (if available)
TreeFam:
Gene Tree for MEIS3P1 (if available)

No data available for Orthologs for MEIS3P1 Gene

Paralogs for MEIS3P1 Gene

(11) SIMAP similar genes for MEIS3P1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with MEIS3P1: view

No data available for Paralogs for MEIS3P1 Gene

Variants for MEIS3P1 Gene

Sequence variations from dbSNP and Humsavar for MEIS3P1 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000834059 -- 15,789,040(+) G/T non_coding_transcript_variant
rs1001286211 -- 15,788,671(+) C/T non_coding_transcript_variant
rs1001400272 -- 15,788,200(+) A/G non_coding_transcript_variant
rs1002286519 -- 15,787,801(+) T/G non_coding_transcript_variant
rs1002951161 -- 15,785,665(+) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MEIS3P1 Gene

Variant ID Type Subtype PubMed ID
dgv3107n100 CNV gain 25217958
dgv563e214 CNV gain 21293372
esv2715702 CNV deletion 23290073
esv3640084 CNV loss 21293372
nsv1160456 CNV deletion 26073780
nsv442411 CNV loss 18776908

Additional Variant Information for MEIS3P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MEIS3P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MEIS3P1 Gene

Disorders for MEIS3P1 Gene

Additional Disease Information for MEIS3P1

No disorders were found for MEIS3P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MEIS3P1 Gene

Publications for MEIS3P1 Gene

  1. DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage. (PMID: 16625196) Zody MC … Nusbaum C (Nature 2006) 3 4 58
  2. Identification of a conserved family of Meis1-related homeobox genes. (PMID: 9049632) Steelman S … Buchberg AM (Genome research 1997) 2 3 58
  3. Genetic correlates of brain aging on MRI and cognitive test measures: a genome-wide association and linkage analysis in the Framingham Study. (PMID: 17903297) Seshadri S … Wolf PA (BMC medical genetics 2007) 44 58
  4. A genome-wide association study for blood lipid phenotypes in the Framingham Heart Study. (PMID: 17903299) Kathiresan S … Cupples LA (BMC medical genetics 2007) 44 58
  5. Framingham Heart Study genome-wide association: results for pulmonary function measures. (PMID: 17903307) Wilk JB … O'Connor GT (BMC medical genetics 2007) 44 58

Products for MEIS3P1 Gene

Sources for MEIS3P1 Gene

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