MEIS3P1 Gene
pseudogene GIFtS: 33
GCID: GC17P015694
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Meis homeobox 3 pseudogene 1(Previous names: Meis1, myeloid ecotropic viral integration site 1 homolog...)
(Previous symbols: MEIS3, MEIS4)
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Aliases
for MEIS3P1 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
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This gene clusters with an RNA gene
Subcategory (RNA class): lncRNA
Quality score for the ORGUL clustered with this gene is 3
| Aliases |
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| Meis Homeobox 3 Pseudogene 11 2 | | Meis1 Homolog 3 (Mouse) Pseudogene 11 | | MEIS31 2 | | Meis1, Myeloid Ecotropic Viral Integration Site 1 Homolog 3 (Mouse)1 | | MEIS41 2 | | Meis1, Myeloid Ecotropic Viral Integration Site 1 Homolog 4 (Mouse)1 | | MRG21 2 | | |
| External Ids: | HGNC: 70021 | Entrez Gene: 42132 | Ensembl: ENSG000001792777 | UniProtKB: A6NDR63 | | ORGUL members: | |
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| NONCODE:n405457 | |
Export aliases for MEIS3P1 gene to outside databasesPrevious GC identifers: GC17P015632 GC17P015689 GC17P015691
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Summaries
for MEIS3P1 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
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Entrez Gene summary for MEIS3P1:
This gene appears to be a retrotransposed pseudogene based on its lack of exons compared to other family members, oneof which is found on chromosome 19 (MEIS3). It does appear to be transcribed and has an ORF that may encode a proteinof similar size and sequence to that encoded by MEIS3. (provided by RefSeq, Jul 2008)
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Genomic Views
for MEIS3P1 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000017.10 NC_018928.1 NT_010718.16
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the MEIS3P1 gene promoter:
HOXA9B HOXA9 SRF SRF (504 AA) CUTL1 Meis-1b C/EBPalpha AREB6 PPAR-gamma1 Meis-1
Other transcription factors
Search SABiosciences Chromatin IP Primers for MEIS3P1
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat MEIS3P1 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 17p12 Ensembl cytogenetic band: 17p12 HGNC cytogenetic band: 17p12MEIS3P1 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 17 GeneLoc Exon Structure GeneLoc location for GC17P015694: view genomic region
(about GC identifiers)
Start:
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15,690,066 bp from pter |
End:
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15,693,019 bp from pter |
Size:
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2,954 bases |
Orientation:
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plus strand |
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Proteins
for MEIS3P1 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
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UniProtKB/Swiss-Prot: ME3L1_HUMAN, A6NDR6 (See
protein sequence)Recommended Name: Putative homeobox protein Meis3-like 1 Size: 274 amino acids; 30204 Da
Subcellular location: Nucleus (By similarity)
Caution: Could be the product of a pseudogeneExplore the universe of human proteins at neXtProt for MEIS3P1: NX_A6NDR6
MEIS3P1 Protein expression data from MOPED and PaxDb: About this image 
Human Recombinant Protein Products:
Gene Ontology (GO): 1 cellular component term (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
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| GO:0005634 | nucleus |
IEA | -- |
MEIS3P1 for ontologies About GeneDecksing
MEIS3P1 Antibody Products:
Assay Products for MEIS3P1: |
Protein
Domains /
Families
for MEIS3P1 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
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MEIS3P1 for domains About GeneDecksing
3 InterPro domains/families:Graphical View of Domain Structure for InterPro Entry A6NDR6ProtoNet protein and cluster: A6NDR6 UniProtKB/Swiss-Prot: ME3L1_HUMAN, A6NDR6Similarity: Belongs to the TALE/MEIS homeobox familySimilarity: Contains 1 homeobox DNA-binding domain |
Function
for MEIS3P1 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
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In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for MEIS3P1 |
Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
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| GO:0003700 | sequence-specific DNA binding transcription factor activity |
IEA | -- | | GO:0043565 | sequence-specific DNA binding |
IEA | -- |
MEIS3P1 for ontologies About GeneDecksing
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Pathways & Interactions
for MEIS3P1 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
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Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for MEIS3P1
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Drugs & Compounds
for MEIS3P1 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
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 Browse Tocris compounds for MEIS3P1
Search CenterWatch for drugs/clinical trials and news about MEIS3P1 
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Transcripts
for MEIS3P1 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
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Unigene Cluster for MEIS3P1: Meis homeobox 3 pseudogene 1 Hs.356135 [show with all ESTs]Unigene Representative Sequence: NR_0022111 Ensembl transcript including schematic representation, and UCSC links where relevant: ENST00000495167(uc002gpc.3)
Additional cDNA sequence: AK054814.1 NR_002211.1 U68385.1 3 DOTS entries: DT.95179990 DT.95072800 DT.91662826 24/47 AceView cDNA sequences (see all 47): BU685266 BU507682 BU686816 BM463727 BQ575773 AI633525 BF434206 BE644900 AI278906 AI079175 AI393146 AW270098 AW468707 AA846880 BU568566 AA700511 AA369192 AI186723 AI740483 AJ009667 BE041535 CB108677 AI383066 AI823495
GeneLoc Exon Structure
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Expression
for MEIS3P1 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| MEIS3P1 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: TTTAGAATAG
About this image
See MEIS3P1 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for MEIS3P1
SOURCE GeneReport for Unigene cluster: Hs.356135
SABiosciences Custom PCR Arrays for MEIS3P1
Primer
Products: |  | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for MEIS3P1
Browse OriGene validated miRNA SYBR primer pairs
| | | Search SABiosciences RT2 qPCR
Primer Assays in human, mouse, rat MEIS3P1 | | | Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat MEIS3P1 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat MEIS3P1 | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for MEIS3P1 |
Orthologs
for MEIS3P1 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
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ENSEMBL Gene Tree for MEIS3P1 (if available)
TreeFam Gene Tree for MEIS3P1 (if available) |
Paralogs
for MEIS3P1 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
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Genomic Variants
for MEIS3P1 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
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Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 1 variation for MEIS3P1
1 CNV: 38349 | SABiosciences Cancer Mutation PCR Assays |
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Disorders
/ Diseases
for MEIS3P1 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
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Publications
for MEIS3P1 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
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PubMed articles for MEIS3P1 gene integrated from 9 sources:
(articles sorted by number of sources associating them with MEIS3P1) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage. (PubMed id 16625196)1, 2 Zody M.C.... Nusbaum C. (2006)
- Identification of a conserved family of Meis1-related homeobox genes. (PubMed id 9049632)1, 3 Steelman S.... Buchberg A.M. (1997)
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1 Ota T.... Sugano S. (2004)
- Normalization and subtraction: two approaches to facilitate gene discovery. (PubMed id 8889548)1 Bonaldo M.F.... Soares M.B. (1996)
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External Searches for MEIS3P1 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
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Genome Databases showing MEIS3P1 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
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Other Databases showing MEIS3P1 gene
(According to HUGE)
About This Section
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Specialized Databases showing MEIS3P1 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
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| Name | Description |
| PharmGKB entry for MEIS3P1 | Pharmacogenomics, SNPs, Pathways |
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About This Section
| Patent Information for MEIS3P1 gene:
Search GeneIP for patents involving MEIS3P1
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Products
for MEIS3P1 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
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|  | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat MEIS3P1 | | | Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing MEIS3P1 | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat MEIS3P1 | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat MEIS3P1 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat MEIS3P1 | | | Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat MEIS3P1 |
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| | | | Search Tocris compounds for MEIS3P1 |
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 | | | MEIS3P1 Proteins, Antibodies, CLIAs, and ELISAs |
| | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for MEIS3P1 |
|  |  |  | | | | Search ThermoFisher Antibodies for MEIS3P1 |
| | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat MEIS3P1 |
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GeneCards Homepage -
Last full update: 19 Mar 2013 -
Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013
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