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Aliases for MEIS3P1 Gene

Aliases for MEIS3P1 Gene

  • Meis Homeobox 3 Pseudogene 1 2 3
  • Meis1, Myeloid Ecotropic Viral Integration Site 1 Homolog 3 (Mouse) 2
  • Meis1, Myeloid Ecotropic Viral Integration Site 1 Homolog 4 (Mouse) 2
  • Meis1, Myeloid Ecotropic Viral Integration Site 1 Homolog 3 3
  • Meis1, Myeloid Ecotropic Viral Integration Site 1 Homolog 4 3
  • Putative Homeobox Protein Meis3-Like 1 3
  • Meis1 Homolog 3 (Mouse) Pseudogene 1 2
  • Meis1 Homolog 3 Pseudogene 1 3
  • Meis Homolog 3 3
  • MEIS3 3
  • MEIS4 3
  • MRG2 3

External Ids for MEIS3P1 Gene

Previous HGNC Symbols for MEIS3P1 Gene

  • MEIS3
  • MEIS4

Previous GeneCards Identifiers for MEIS3P1 Gene

  • GC17P015632
  • GC17P015689
  • GC17P015691
  • GC17P015694

Summaries for MEIS3P1 Gene

Entrez Gene Summary for MEIS3P1 Gene

  • This gene appears to be a retrotransposed pseudogene based on its lack of exons compared to other family members, one of which is found on chromosome 19 (MEIS3). It does appear to be transcribed and has an ORF that may encode a protein of similar size and sequence to that encoded by MEIS3. [provided by RefSeq, Jul 2008]

GeneCards Summary for MEIS3P1 Gene

MEIS3P1 (Meis Homeobox 3 Pseudogene 1) is a Pseudogene. GO annotations related to this gene include sequence-specific DNA binding transcription factor activity and sequence-specific DNA binding.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MEIS3P1 Gene

Genomics for MEIS3P1 Gene

Regulatory Elements for MEIS3P1 Gene

Genomic Location for MEIS3P1 Gene

Start:
15,786,618 bp from pter
End:
15,789,705 bp from pter
Size:
3,088 bases
Orientation:
Plus strand

Genomic View for MEIS3P1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for MEIS3P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MEIS3P1 Gene

Proteins for MEIS3P1 Gene

  • Protein details for MEIS3P1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NDR6-ME3L1_HUMAN
    Recommended name:
    Putative homeobox protein Meis3-like 1
    Protein Accession:
    A6NDR6
    Secondary Accessions:

    Protein attributes for MEIS3P1 Gene

    Size:
    274 amino acids
    Molecular mass:
    30204 Da
    Quaternary structure:
    No Data Available

neXtProt entry for MEIS3P1 Gene

Proteomics data for MEIS3P1 Gene at MOPED

Post-translational modifications for MEIS3P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MEIS3P1 Gene

Domains for MEIS3P1 Gene

Gene Families for MEIS3P1 Gene

HGNC:
  • TALE :Homeoboxes / TALE class

Protein Domains for MEIS3P1 Gene

Suggested Antigen Peptide Sequences for MEIS3P1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

A6NDR6

UniProtKB/Swiss-Prot:

ME3L1_HUMAN :
  • A6NDR6
Domain:
  • Contains 1 homeobox DNA-binding domain.
Family:
  • Belongs to the TALE/MEIS homeobox family.
genes like me logo Genes that share domains with MEIS3P1: view

Function for MEIS3P1 Gene

Gene Ontology (GO) - Molecular Function for MEIS3P1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
genes like me logo Genes that share ontologies with MEIS3P1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for MEIS3P1 Gene

Localization for MEIS3P1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for MEIS3P1 Gene

Gene Ontology (GO) - Cellular Components for MEIS3P1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with MEIS3P1: view

No data available for Subcellular locations from COMPARTMENTS for MEIS3P1 Gene

Pathways for MEIS3P1 Gene

SuperPathways for MEIS3P1 Gene

No Data Available

Interacting Proteins for MEIS3P1 Gene

Gene Ontology (GO) - Biological Process for MEIS3P1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with MEIS3P1: view

No data available for Pathways by source for MEIS3P1 Gene

Transcripts for MEIS3P1 Gene

mRNA/cDNA for MEIS3P1 Gene

(47) Selected AceView cDNA sequences:
(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MEIS3P1 Gene

Meis homeobox 3 pseudogene 1:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for MEIS3P1

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for MEIS3P1
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MEIS3P1 Gene

No ASD Table

Relevant External Links for MEIS3P1 Gene

GeneLoc Exon Structure for
MEIS3P1
ECgene alternative splicing isoforms for
MEIS3P1

Expression for MEIS3P1 Gene

mRNA expression in normal human tissues for MEIS3P1 Gene

SOURCE GeneReport for Unigene cluster for MEIS3P1 Gene Hs.356135

genes like me logo Genes that share expressions with MEIS3P1: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for MEIS3P1 Gene

Orthologs for MEIS3P1 Gene

Evolution for MEIS3P1 Gene

ENSEMBL:
Gene Tree for MEIS3P1 (if available)
TreeFam:
Gene Tree for MEIS3P1 (if available)

No data available for Orthologs for MEIS3P1 Gene

Paralogs for MEIS3P1 Gene

Selected SIMAP similar genes for MEIS3P1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with MEIS3P1: view

No data available for Paralogs for MEIS3P1 Gene

Variants for MEIS3P1 Gene

Sequence variations from dbSNP and Humsavar for MEIS3P1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
rs10780 -- 15,788,068(+) GATTC(C/T)TTCAC nc-transcript-variant
rs11218 -- 15,788,009(+) GGGAC(A/G)GGGTG nc-transcript-variant
rs11766 -- 15,788,074(+) TTCAC(C/T)CTCCT nc-transcript-variant
rs12607 -- 15,787,992(-) GTCCT(C/G)GCGGC nc-transcript-variant
rs13877 -- 15,787,860(+) GCCCA(C/T)CCAAG nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for MEIS3P1 Gene

Variant ID Type Subtype PubMed ID
nsv907705 CNV Gain 21882294
esv2715702 CNV Deletion 23290073
nsv442411 CNV CNV 18776908

Relevant External Links for MEIS3P1 Gene

HapMap Linkage Disequilibrium report
MEIS3P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for MEIS3P1 Gene

Disorders for MEIS3P1 Gene

Relevant External Links for MEIS3P1

Genetic Association Database (GAD)
MEIS3P1
genes like me logo Genes that share disorders with MEIS3P1: view

No data available for UniProtKB/Swiss-Prot for MEIS3P1 Gene

Publications for MEIS3P1 Gene

  1. DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage. (PMID: 16625196) Zody M.C. … Nusbaum C. (Nature 2006) 3 4
  2. Identification of a conserved family of Meis1-related homeobox genes. (PMID: 9049632) Steelman S. … Buchberg A.M. (Genome Res. 1997) 2 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  4. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3
  5. Genetic correlates of brain aging on MRI and cognitive test measures: a genome-wide association and linkage analysis in the Framingham Study. (PMID: 17903297) Seshadri S. … Wolf P.A. (BMC Med. Genet. 2007) 48

Products for MEIS3P1 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate MEIS3P1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for MEIS3P1
    • Block miRNA regulation of MEIS3P1 using miScript Target Protectors

    Sources for MEIS3P1 Gene

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