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Aliases for MEIS1-AS3 Gene

Subcategory (RNA class) for MEIS1-AS3 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for MEIS1-AS3 Gene

  • MEIS1 Antisense RNA 3 2 3 5
  • MEIS1 Antisense RNA 3 (Non-Protein Coding) 2

External Ids for MEIS1-AS3 Gene

Previous GeneCards Identifiers for MEIS1-AS3 Gene

  • GC02M066655

Summaries for MEIS1-AS3 Gene

GeneCards Summary for MEIS1-AS3 Gene

MEIS1-AS3 (MEIS1 Antisense RNA 3) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MEIS1-AS3 Gene

Genomics for MEIS1-AS3 Gene

Regulatory Elements for MEIS1-AS3 Gene

Enhancers for MEIS1-AS3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02F066430 1.3 FANTOM5 Ensembl ENCODE 25.8 -6.2 -6249 18.4 PKNOX1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 FOS ZNF263 MEIS1-AS3 ETAA1 MEIS1-AS2
GH02F066424 1 FANTOM5 Ensembl ENCODE 25.5 +7.2 7210 3.4 SOX13 PKNOX1 SAP130 SUZ12 MLX ZIC2 E2F1 ZNF664 POLR2A ZNF600 MEIS1-AS3 MEIS1 LINC01873
GH02F066568 1.6 ENCODE 12.7 -135.9 -135921 1.7 PKNOX1 CBX3 ETV1 BMI1 FEZF1 FOXK2 ZNF366 SCRT2 TRIM24 ZNF362 MEIS1 MEIS1-AS3 MEIS1-AS2 GC02M066566 LINC01798
GH02F066572 1.4 FANTOM5 Ensembl ENCODE 12.1 -145.2 -145189 11.5 PKNOX1 ARNT ARID4B ZNF2 YY1 ZNF263 SP3 SP5 REST CBX8 MEIS1 MEIS1-AS2 MEIS1-AS3 LINC01798 LINC01797
GH02F066476 0.5 ENCODE 12 -44.2 -44221 1.5 PKNOX1 JUN JUNB JUND ATF3 IKZF1 EED PBX2 ETV6 CREM MEIS1-AS2 MEIS1 MEIS1-AS3 GC02P066470 GC02M066566
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around MEIS1-AS3 on UCSC Golden Path with GeneCards custom track

Genomic Location for MEIS1-AS3 Gene

Chromosome:
2
Start:
66,423,342 bp from pter
End:
66,433,470 bp from pter
Size:
10,129 bases
Orientation:
Minus strand

Genomic View for MEIS1-AS3 Gene

Genes around MEIS1-AS3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MEIS1-AS3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MEIS1-AS3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MEIS1-AS3 Gene

Proteins for MEIS1-AS3 Gene

Post-translational modifications for MEIS1-AS3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MEIS1-AS3 Gene

Domains & Families for MEIS1-AS3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MEIS1-AS3 Gene

Function for MEIS1-AS3 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MEIS1-AS3 Gene

Localization for MEIS1-AS3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MEIS1-AS3 Gene

Pathways & Interactions for MEIS1-AS3 Gene

SuperPathways for MEIS1-AS3 Gene

No Data Available

Interacting Proteins for MEIS1-AS3 Gene

Gene Ontology (GO) - Biological Process for MEIS1-AS3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MEIS1-AS3 Gene

Transcripts for MEIS1-AS3 Gene

mRNA/cDNA for MEIS1-AS3 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MEIS1-AS3 Gene

MEIS1 antisense RNA 3:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MEIS1-AS3 Gene

No ASD Table

Relevant External Links for MEIS1-AS3 Gene

GeneLoc Exon Structure for
MEIS1-AS3
ECgene alternative splicing isoforms for
MEIS1-AS3

Expression for MEIS1-AS3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MEIS1-AS3 Gene

mRNA differential expression in normal tissues according to GTEx for MEIS1-AS3 Gene

This gene is overexpressed in Esophagus - Gastroesophageal Junction (x5.7), Cervix - Ectocervix (x5.2), Cervix - Endocervix (x5.0), and Esophagus - Muscularis (x4.2).

SOURCE GeneReport for Unigene cluster for MEIS1-AS3 Gene:

Hs.526753
genes like me logo Genes that share expression patterns with MEIS1-AS3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MEIS1-AS3 Gene

Orthologs for MEIS1-AS3 Gene

Evolution for MEIS1-AS3 Gene

ENSEMBL:
Gene Tree for MEIS1-AS3 (if available)
TreeFam:
Gene Tree for MEIS1-AS3 (if available)

No data available for Orthologs for MEIS1-AS3 Gene

Paralogs for MEIS1-AS3 Gene

No data available for Paralogs for MEIS1-AS3 Gene

Variants for MEIS1-AS3 Gene

Sequence variations from dbSNP and Humsavar for MEIS1-AS3 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs10166494 -- 66,425,156(+) TCTTC(G/T)TAGGA nc-transcript-variant
rs10167067 -- 66,425,775(+) ACCAG(C/T)GCTGG nc-transcript-variant
rs10177403 -- 66,424,956(+) TCCCT(A/G)CCTGG nc-transcript-variant
rs10183293 -- 66,432,242(+) CAGCC(A/G)TCGGA intron-variant
rs10200708 -- 66,430,670(+) CCAAG(C/T)CTCCA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for MEIS1-AS3 Gene

Variant ID Type Subtype PubMed ID
esv1226948 CNV insertion 17803354

Relevant External Links for MEIS1-AS3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MEIS1-AS3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MEIS1-AS3 Gene

Disorders for MEIS1-AS3 Gene

Relevant External Links for MEIS1-AS3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MEIS1-AS3

No disorders were found for MEIS1-AS3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MEIS1-AS3 Gene

Publications for MEIS1-AS3 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3 64

Products for MEIS1-AS3 Gene

Sources for MEIS1-AS3 Gene

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