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Aliases for MEIS1-AS3 Gene

Subcategory (RNA class) for MEIS1-AS3 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for MEIS1-AS3 Gene

  • MEIS1 Antisense RNA 3 2 3 5
  • MEIS1 Antisense RNA 3 (Non-Protein Coding) 2

External Ids for MEIS1-AS3 Gene

Previous GeneCards Identifiers for MEIS1-AS3 Gene

  • GC02M066655

Summaries for MEIS1-AS3 Gene

GeneCards Summary for MEIS1-AS3 Gene

MEIS1-AS3 (MEIS1 Antisense RNA 3) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MEIS1-AS3 Gene

Genomics for MEIS1-AS3 Gene

Regulatory Elements for MEIS1-AS3 Gene

Enhancers for MEIS1-AS3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02G066430 2 FANTOM5 Ensembl ENCODE dbSUPER 25.8 -6.2 -6249 18.4 PKNOX1 CREB3L1 ARNT ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 MEIS1-AS3 ETAA1 MEIS1-AS2
GH02G066424 1.4 FANTOM5 ENCODE dbSUPER 25.6 +7.2 7210 3.4 PKNOX1 FOXA2 MLX ZSCAN4 FOS ZNF398 ZNF623 CEBPA ZBTB26 SOX13 MEIS1-AS3 MEIS1 LINC01873
GH02G066568 2.1 ENCODE dbSUPER 12.7 -135.9 -135921 1.7 HDGF PKNOX1 CBX3 FEZF1 BMI1 ZNF366 SCRT2 ZNF362 USF2 ZEB2 MEIS1 MEIS1-AS3 MEIS1-AS2 GC02M066566 LINC01798
GH02G066535 2.3 VISTA dbSUPER 11.3 -103.2 -103200 2.6 ARNT INSM2 PYGO2 FEZF1 CEBPG ZNF384 ZIC2 BCL11B GLI2 EZH2 MEIS1 MEIS1-AS3 MEIS1-AS2 GC02M066566 GC02P066470
GH02G066506 2.3 Ensembl ENCODE dbSUPER 10.9 -75.3 -75272 3.5 RING1 PKNOX1 JUN TEAD4 INSM2 FEZF1 ZNF335 ZNF121 ZNF366 GLI2 MEIS1 MEIS1-AS3 GC02P066470 GC02M066566
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MEIS1-AS3 on UCSC Golden Path with GeneCards custom track

Genomic Location for MEIS1-AS3 Gene

Chromosome:
2
Start:
66,423,342 bp from pter
End:
66,433,470 bp from pter
Size:
10,129 bases
Orientation:
Minus strand

Genomic View for MEIS1-AS3 Gene

Genes around MEIS1-AS3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MEIS1-AS3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MEIS1-AS3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MEIS1-AS3 Gene

Proteins for MEIS1-AS3 Gene

Post-translational modifications for MEIS1-AS3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MEIS1-AS3 Gene

Domains & Families for MEIS1-AS3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MEIS1-AS3 Gene

Function for MEIS1-AS3 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MEIS1-AS3 Gene

Localization for MEIS1-AS3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MEIS1-AS3 Gene

Pathways & Interactions for MEIS1-AS3 Gene

SuperPathways for MEIS1-AS3 Gene

No Data Available

Interacting Proteins for MEIS1-AS3 Gene

Gene Ontology (GO) - Biological Process for MEIS1-AS3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MEIS1-AS3 Gene

Drugs & Compounds for MEIS1-AS3 Gene

No Compound Related Data Available

Transcripts for MEIS1-AS3 Gene

mRNA/cDNA for MEIS1-AS3 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MEIS1-AS3 Gene

MEIS1 antisense RNA 3:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MEIS1-AS3 Gene

No ASD Table

Relevant External Links for MEIS1-AS3 Gene

GeneLoc Exon Structure for
MEIS1-AS3
ECgene alternative splicing isoforms for
MEIS1-AS3

Expression for MEIS1-AS3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MEIS1-AS3 Gene

mRNA differential expression in normal tissues according to GTEx for MEIS1-AS3 Gene

This gene is overexpressed in Esophagus - Gastroesophageal Junction (x5.7), Cervix - Ectocervix (x5.2), Cervix - Endocervix (x5.0), and Esophagus - Muscularis (x4.2).

SOURCE GeneReport for Unigene cluster for MEIS1-AS3 Gene:

Hs.526753
genes like me logo Genes that share expression patterns with MEIS1-AS3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MEIS1-AS3 Gene

Orthologs for MEIS1-AS3 Gene

Evolution for MEIS1-AS3 Gene

ENSEMBL:
Gene Tree for MEIS1-AS3 (if available)
TreeFam:
Gene Tree for MEIS1-AS3 (if available)

No data available for Orthologs for MEIS1-AS3 Gene

Paralogs for MEIS1-AS3 Gene

No data available for Paralogs for MEIS1-AS3 Gene

Variants for MEIS1-AS3 Gene

Sequence variations from dbSNP and Humsavar for MEIS1-AS3 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1000160593 -- 66,425,724(+) CGAAG(C/T)AGAAA nc-transcript-variant
rs1000223855 -- 66,428,351(+) CTATG(G/T)TAACA intron-variant
rs1000295236 -- 66,431,926(+) ATATA(C/T)TGACC intron-variant
rs1000437149 -- 66,431,141(+) CGGAA(A/G)GCCTG intron-variant
rs1001211821 -- 66,432,193(+) CAGAT(A/G)CCTGG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for MEIS1-AS3 Gene

Variant ID Type Subtype PubMed ID
esv1226948 CNV insertion 17803354

Relevant External Links for MEIS1-AS3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MEIS1-AS3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MEIS1-AS3 Gene

Disorders for MEIS1-AS3 Gene

Relevant External Links for MEIS1-AS3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MEIS1-AS3

No disorders were found for MEIS1-AS3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MEIS1-AS3 Gene

Publications for MEIS1-AS3 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3 64

Products for MEIS1-AS3 Gene

Sources for MEIS1-AS3 Gene

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