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MEIS1 Gene

protein-coding   GIFtS: 59

GC02P066574
Meis homeobox 1
(Previous names: Meis1 (mouse) homolog, Meis1, myeloid ecotropic viral integration site 1 homolog (mouse) )
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
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Aliases
MGC43380 2
WUGSC:H_NH0444B04.1 2
Descriptions
Meis homeobox 1 2
Meis1 (mouse) homolog 1
Meis1, myeloid ecotropic viral integration site 1 homolog 2
Meis1, myeloid ecotropic viral integration site 1 homolog
(mouse) 1
leukemogenic homolog protein 2
External Ids
HGNC: 70001
Entrez Gene: 42112
UniProtKB: O004703
Ensembl: ENSG000001439957
Search outside databases for aliases for MEIS1 gene

Previous GC identifers: GC02P066796 GC02P066620 GC02P066637

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

EntrezGene summary for MEIS1:
Homeobox genes, of which the most well-characterized category is represented by the HOX genes, play
a crucial role in normal development. In addition, several homeoproteins are involved in
neoplasia. This gene encodes a homeobox protein belonging to the TALE ('three amino acid loop
extension') family of homeodomain-containing proteins. [provided by RefSeq]

UniProtKB/Swiss-Prot: MEIS1_HUMAN, O00470
Function: Acts as a transcriptional regulator of PAX6. Acts as a transcriptional activator of PF4
in complex with PBX1 or PBX2. Required for hematopoiesis, megakaryocyte lineage development and
vascular patterning. May function as a cofactor for HOXA7 and HOXA9 in the induction of myeloid
leukemias

Gene Wiki entry for MEIS1

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
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Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the MEIS1 gene  

Entrez Gene cytogenetic band: 2p14-p13   Ensembl cytogenetic band:  2p14   HGNC cytogenetic band: 2p14

MEIS1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 2         GeneLoc Exon Structure

GeneLoc location for GC02P066574:     (about GC identifiers)

Start:
66,516,036 bp from pter
End:
66,653,395 bp from pter
Size:
137,360 bases
Orientation:
plus strand
RefSeq DNA sequence:
NC_000002.10  NT_022184.14  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: MEIS1_HUMAN, O00470 (See protein sequence)
Recommended Name: Homeobox protein Meis1  
Size: 390 amino acids; 43016 Da
Subunit: Interacts with the N-terminal region of PBX1 to form a heterodimer which binds DNA
including a cAMP-responsive sequence in CYP17. Also forms heterodimers with PBX2. Forms
heterotrimers with PBX1 or PBX2 and a number of HOX proteins including HOXA9, HOXD4 and HOXD9
where it acts as a non-DNA-binding partner. Also forms heterotrimers with PBX1 and HOX proteins
including HOXD9 and HOXD10 where PBX1 is the non-DNA-binding partner
Subcellular location: Nucleus (By similarity)
Secondary accessions: A8MV50
Alternative splicing: 2 isoforms:  O00470-1   O00470-2   

REFSEQ proteins: NP_002389.1  

ENSEMBL proteins: 
ENSP00000386708 ENSP00000386514 ENSP00000384127 ENSP00000381518 ENSP00000272369 ENSP00000384461 


Human Recombinant Proteins 
Browse Drug Discovery Central at Invitrogen for human recombinant proteins
Browse Purified and Recombinant Proteins at Millipore
Browse Human Recombinant Proteins at Sigma-Aldrich  
Browse R&D Systems for human recombinant proteins
Browse recombinant and purified proteins available from Enzo Life Sciences
Recombinant Proteins from Abcam (MEIS1)
Human Recombinant Proteins from Abnova (MEIS1)
              OriGene Purified Recombinant Human Protein: MEIS1 

1 Gene Ontology (GO) cellular component term (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0005634 nucleus IEA--
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Antibodies for MEIS1: 
Browse Antibodies Central at Invitrogen
Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
Sigma-Aldrich Antibodies for MEIS1
Browse R&D Systems for Antibodies
Antibodies from Abcam (MEIS1), each with their AbpromiseSM
Monoclonal and Polyclonal Antibodies from Abnova (MEIS1)
Novus Biologicals Antibodies for MEIS1

Assays for MEIS1: 
Browse Invitrogen for biochemical assays
Browse Kits and Assays available from Millipore
Browse R&D Systems for biochemical assays
Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

3 InterPro domains/families:
 IPR001356 Homeobox
 IPR017970 Homeobox_CS
 IPR012287 Homeodomain-rel


   GeneDecks  MEIS1 for the domains selected above  
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Graphical View of Domain Structure for InterPro Entry O00470

ProtoNet protein and cluster: O00470

UniProtKB/Swiss-Prot: MEIS1_HUMAN, O00470
Similarity: Belongs to the TALE/MEIS homeobox family
Similarity: Contains 1 homeobox DNA-binding domain

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section

Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (MEIS1)
Browse for Gene Knock-down Tools from Millipore
Abnova Chimera RNAi Products for Gene knock-down (MEIS1)
              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002398

              Applied Biosystems Silencer® siRNAs for MEIS1

              Sigma-Aldrich siRNA for MEIS1  
                     Sigma-Aldrich shRNA for MEIS1  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Clones:Invitrogen Clones for MEIS1
Browse Clones for the Expression of Recombinant Proteins Available from Millipore
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_002398
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_002398
                                 untagged cDNA clone in CMV expression vector: NM_002398 

Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
              OriGene genome-wide validated SYBR primer pairs: NM_002398

UniProtKB/Swiss-Prot: MEIS1_HUMAN, O00470
Function: Acts as a transcriptional regulator of PAX6. Acts as a transcriptional activator of PF4
in complex with PBX1 or PBX2. Required for hematopoiesis, megakaryocyte lineage development and
vascular patterning. May function as a cofactor for HOXA7 and HOXA9 in the induction of myeloid
leukemias

Genatlas biochemistry entry for MEIS1:
homeo domain protein,unusual,murine Meis1 (myeloid ecotropic viral integration site 1)
ortholog,expressed in fetal liver,normal immunohematopoietic tissues and cerebellum,binding DNA
cooperatively with the heterodimer E2A/myogenic transcription factors

6 MGI mutant phenotypes (inferred from 2 alleles(MGI details for Meis1):

hematopoietic systemlethality-prenatal/perinatalliver/biliary systemskin/coat/nails
vision/eye

3 Gene Ontology (GO) molecular function terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0003700 transcription factor activity IEA--
GO:0003702 RNA polymerase II transcription factor activity TAS7565694
GO:0043565 sequence-specific DNA binding IEA--
About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section

1 Invitrogen iPath™ Online BioAtlas - Pathway for MEIS1 (Maps provided by GeneGo):
 Role of PBX in fibroblasts signaling pathways

   GeneDecks  MEIS1 for the pathways selected above  
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 Gene Network CentralTM Interacting Genes and Proteins Network for  MEIS1 


5/32 Interacting proteins for MEIS1 (ENSP000002723693) via UniProtKB, MINT, and/or STRING (see all 32 )
InteractantInteraction Details
GeneCardExternal ID(s)
HOXA9ENSP000003436193STRING (score=.999)
HOXB8ENSP000002391443STRING (score=.969)
NUP98ENSP000003160323STRING (score=.951)
FLT3ENSP000003703693STRING (score=.95)
HOXA10ENSP000002839213STRING (score=.939)
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2 Gene Ontology (GO) biological process terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0006355 regulation of transcription, DNA-dependent IEA--
GO:0007275 multicellular organismal development IEA--
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(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Browse drugs & compounds from Enzo Life Sciences
Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for MEIS1
1 Novoseek chemical compound relationship for MEIS1 gene
Compound   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
tyrosine 0.00 2 15755900 (2)
About this table


(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (MEIS1)
Browse for Gene Knock-down Tools from Millipore
Abnova Chimera RNAi Products for Gene knock-down (MEIS1)
              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002398

              Sigma-Aldrich siRNA for MEIS1  
                     Sigma-Aldrich shRNA for MEIS1  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Applied Biosystems Silencer® siRNAs: 

NM_002398  

REFSEQ mRNAs for MEIS1 gene: 

NM_002398.2   

Applied Biosystems TaqMan ® Gene Expression Assays: 

NM_002398  

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_002398
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_002398
                                 untagged cDNA clone in CMV expression vector: NM_002398 

Additional cDNA sequence: 

AF088018.1 AK098174.1 AK297109.1 AK297817.1 AK314949.1 BC043503.1 BX648626.1 CR612956.1 
CR749827.1 U85707.1 

16 DOTS entries:

DT.95147812  DT.100780375  DT.100647990  DT.452959  DT.208558  DT.99995176  DT.102832068  DT.91868493 
DT.86853769  DT.120951306  DT.120951310  DT.120951322  DT.120951343  DT.40264477  DT.95263413  DT.99927451 

24/149 AceView cDNA sequences (see all 149 ):

BG502562 AI968410 T16586 CB216927 BX119044 AW452245 CA943697 BM716621 
AI648608 BM970182 NM_002398 N54742 CB854199 BU618932 CB215310 BG109428 
AA035599 BP376045 AI669255 AA081754 AK098174 AI687866 AW243936 CB852923 

highest scoring ESTs for MEIS1:

U85707 AA001443 AA017297 AA034934 AA035599 AA036998 AA228997 AA230050 AA230051 AA230104 

Unigene Cluster for MEIS1:

Meis homeobox 1
Hs.526754  [show with all ESTs]
Unigene Representative Sequence: CR749827


GeneLoc Exon Structure

5/10 Alternative Splicing Database (ASD) splice patterns (SP) for MEIS1 (see all 10 )

ExUns: 1a · 1b ^ 2a · 2b ^ 3 ^ 4 ^ 5a · 5b ^ 6 ^ 7 ^ 8a · 8b ^ 9a · 9b ^ 10 ^ 11 ^ 12 ^ 13 ^ 14a · 14b ^ 15 ^ 16a · 16b · 16c ^ 17a · 17b ^
SP1:              -           -           -     -           -                 -                 -                                               -               
SP2:              -           -           -     -           -                 -                 -                                                               
SP3:                                                        -                 -                 -                                               -               
SP4:                          -           -     -           -                 -                 -                                                               
SP5:                                                                                                                                                            

ExUns: 18a · 18b
SP1:            
SP2:            
SP3:            
SP4:            
SP5:            

About this scheme

ECgene alternative splicing isoforms for MEIS1

6 Ensembl transcripts including schematic representations:
ENST00000409517  ENST00000409622  ENST00000402908  ENST00000398506  ENST00000272369  ENST00000407092  
(Experimental results according to 1GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
About This Section

MEIS1 expression in normal and diseased human tissues

 Applied Biosystems TaqMan ® Gene Expression Assays for MEIS1

1 / 2 / 3

4 probe-sets matching MEIS1 gene


Affymetrix
probe-set
Array  GeneAnnot data GeneNote data GeneTide data
# genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
40763_at2, 3 U95-A 1 1.00 1.00 1.00 1.00 U85707 1.00 1.00 1.00 1

204069_at2, 3 U133-A 1 1.00 1.00 -- -- NM_002398 0.60 1.00 0.82 1

1559477_s_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

204069_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
GeneDecks  MEIS1 for binary patterns associated with the probe-sets selected above  
About GeneDecksing
About this table    
Data from (Publications) and GNF BioGPS
    About these images
About these images

CGAP SAGE TAG: --

SOURCE GeneReport for Unigene cluster: Hs.526754

Expression variation in blood from EXPOLDB for MEIS1

UniProtKB/Swiss-Prot: MEIS1_HUMAN, O00470
Tissue specificity: Expressed at low level in normal immunohepatopoietic tissues, including the
fetal liver. Expressed in a subset of myeloid leukemia cell lines, with the highest expression
seen in those with a megakaryocytic-erythroid phenotype. Also expressed at high levels in the
cerebellum

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section


Orthologs for MEIS1 gene from 5/11 species (see all 11 )
Organism Gene Locus Description Human
Similarity
NCBI accessions
chimpanzee
(Pan troglodytes)
MEIS11   -- Meis homeobox 1 98.59(n)
98.68(a)
459288  XM_001166938.1  XP_001166938.1 
cow
(Bos taurus)
MEIS11   -- Meis homeobox 1 97.44(n)
100(a)
613877  XM_876237.2  XP_881330.1 
rat
(Rattus norvegicus)
Meis11   -- Meis homeobox 1 95.68(n)
98.41(a)
686117  XM_001070286.1  XP_001070286.1 
mouse
(Mus musculus)
Meis11, 5 11 (11.00 cM)5
Meis homeobox 11, 5 95.77(n)1
98.68(a)1
172681  NM_010789.21  NP_034919.11 
 AB2216605  AK0329475  (see all 19)
zebrafish
(Danio rerio)
meis12   -- myeloid ecotropic viral integration 1 82.25(n) 170446  AF375871.1 
About this table        Species with no ortholog for MEIS1

ENSEMBL Gene Tree for MEIS1
(Paralogs according to 1HomoloGene
and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
About This Section

Paralogs for MEIS1 gene
MEIS22  MEIS3P22  MEIS32  

(According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section


10/646 NCBI SNPs in MEIS1 are shown (see all 646 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 259)
ABGenomic DataTranscription DataAllele Frequencies
SNP IDValidChr 2 posSequenceRecsAA
Chg
TypeMoreRecsAllele
freq
PopTotal
sample
More
------------
rs116932211,2
C,F,H66653490(+) TAAGCC/TATATA 1 -- ng318Minor allele frequency- T:0.02EU EA WA 840
rs29018631,2
H66649350(+) GAGGTT/GTCGTA 1 V/F mis1 ese34Minor allele frequency- G:0.00EU EA WA 420
rs9971531,2
A,C,F,H,O66624551(-) CACTTC/TGGGAT 1 -- int113Minor allele frequency- T:0.31NA EA EU WA 863
rs10007561,2
A,C,F,H,O66648338(-) TTCCAC/TCTTCT 1 -- int117Minor allele frequency- T:0.26NA EA MN EU WA 1488
rs21929541,2
A,C,F,H,O66631025(+) TCTTTA/GGTTTG 1 -- int112Minor allele frequency- N:0.00EU EA WA NA 1054
rs21392461,2
A,C,F,H,O66575364(+) ATCTCG/ACTTGT 1 -- int112Minor allele frequency- A:0.17NS EU EA WA NA 666
rs22161231,2
A,C,F,H,O66646652(+) TTCCAA/GTTTTC 1 -- int17Minor allele frequency- G:0.18EU EA WA NA 560
rs15191031,2
A,C,F,H,O66531385(+) TACCTT/GGCCAC 1 -- int122Minor allele frequency- G:0.44EA NA EU WA 1800
rs15191021,2
A,C,F,H,O66531320(+) AATAAC/GATTTT 1 -- int111Minor allele frequency- G:0.40NA EU EA WA 972
rs23004861,2
A,C,F,H,O66644908(+) TAGCTG/TACATC 1 -- int113Minor allele frequency- T:0.20EA EU WA NA 2114
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HapMap Linkage Disequilibrium images for MEIS1 (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

OMIM: 601739

9 Novoseek disease relationships for MEIS1 gene

Disease   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
leukemogenesis 81.42 10 16648484 (3), 15755900 (3), 9226379 (1), 15681849 (1) (see all 6)
myeloid leukemia 71.92 8 9226379 (2), 17202314 (1), 10996203 (1), 14713950 (1) (see all 7)
leukemia 65.98 37 19109563 (7), 16469876 (3), 15755900 (3), 11161815 (2) (see all 14)
leukemia promyelocytic acute 40.86 1 11133770 (1)
acute leukemia 35.18 2 10996203 (1), 15160920 (1)
lymphoblastic leukemia acute 32.53 1 11314021 (1)
myeloid leukemia chronic 25.33 1 10602420 (1)
cancer 5.67 5 17949970 (2), 11704843 (1), 11161815 (1), 15755900 (1)
tumors 0.00 5 7565694 (2)
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1 PharmGKB disease relationship for MEIS1 gene
Disease PharmGKB Relations PubMed IDs for articles supporting these relationships
Leukemia, Lymphocytic, Acute, L1FA  GN  12086872 12730115
About this table

Human Genome Epidemiology Navigator: MEIS1 (5 documents)

(Possibly Related Articles in Doctor's Guide)
About This Section

  --

(in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
About This Section

10/102 PubMed articles for MEIS1 gene (see all 102 ):
(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)
(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
About This Section

Entrez Gene: 4211 HGNC: 7000 AceView: MEIS1 Ensembl:ENSG00000143995 euGenes: HUgn4211
ECgene: MEIS1 H-InvDB: MEIS1
(According to HUGE)
About This Section

  --
(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

NameDescription
ATLAS Chromosomes in Cancer entry for MEIS1 Genetics and Cytogenetics in Oncology and Haematology
(Available from WIS Yeda, Salk, Tufts)
About This Section

  --
(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
About This Section



Products for MEIS1:
 TaqMan ® Gene Expression Assays
 TaqMan ® Genotyping Assays
  Free SNP selection tool



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 Predesigned and custom siRNAs for MEIS1 Antibodies for MEIS1
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