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MEIG1 Gene

protein-coding GIFtS: 41
GCID: GC10P015001

Meiosis/Spermiogenesis Associated 1

(Previous name: meiosis expressed gene 1 homolog (mouse))

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(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, ¹⁰fRNAdb, ¹²H-InvDB, ¹³NCBI, ¹⁴NONCODE, and/or ¹⁵RNAdb)
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This gene clusters with an RNA gene
Subcategory (RNA class): lncRNA

Quality score for the ORGUL clustered with this gene is 3

Aliases
Meiosis/Spermiogenesis Associated 1¹ ²		bA2K17.3²
Spermatogenesis Associated 39¹ ²		Meiosis Expressed Gene 1 Homolog²
Meiosis Expressed Gene 1 Homolog (Mouse)¹		Meiosis Expressed Gene 1 Protein Homolog²
SPATA39²

External Ids:	HGNC: 23429¹	Entrez Gene: 644890²	Ensembl: ENSG00000197889⁷	OMIM: 614174⁵	UniProtKB: Q5JSS6³

ORGUL members:

Export aliases for MEIG1 gene to outside databases

Previous GC identifers: GC10U900466 GC10P015042 GC10P014911

(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for MEIG1 Gene:

MEIG1 (meiosis/spermiogenesis associated 1) is a protein-coding gene.

UniProtKB/Swiss-Prot: MEIG1_HUMAN, Q5JSS6

Function: Essential for spermiogenesis (By similarity)

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:

NC_000010.10 NT_008705.17 NC_018921.2

Regulatory elements:

Regulatory transcription factor binding sites in the MEIG1 gene promoter:
p53 Egr-1 Tal-1beta ITF-2 Evi-1 FOXL1 YY1
Other transcription factors

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Epigenetics:

DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat MEIG1

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 10p13 Ensembl cytogenetic band: 10p13 HGNC cytogenetic band: 10p13

MEIG1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
MEIG1 gene location

GeneLoc information about chromosome 10 GeneLoc Exon Structure

GeneLoc location for GC10P015001: view genomic region (about GC identifiers)

Start:	15,001,438 bp from pter	End:	15,030,049 bp from pter
Size:	28,612 bases	Orientation:	plus strand

(According to ¹UniProtKB, HORDE, ²neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
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UniProtKB/Swiss-Prot: MEIG1_HUMAN, Q5JSS6 (See protein sequence)

Recommended Name: Meiosis expressed gene 1 protein homolog

Size: 88 amino acids; 10795 Da

Subunit: Interacts with PACRG (By similarity)

Explore the universe of human proteins at neXtProt for MEIG1: NX_Q5JSS6

Explore proteomics data for MEIG1 at MOPED

See MEIG1 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins: NP_001074305.1

ENSEMBL proteins:

ENSP00000367486 ENSP00000384334

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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1 InterPro protein domain:

IPR020186 Meiosis-expressed_gene_1

Graphical View of Domain Structure for InterPro Entry Q5JSS6

ProtoNet protein and cluster: Q5JSS6

UniProtKB/Swiss-Prot: MEIG1_HUMAN, Q5JSS6

Similarity: Belongs to the MEIG1 family

Find genes that share domains with MEIG1 About GenesLikeMe

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Molecular Function:

UniProtKB/Swiss-Prot Summary: MEIG1_HUMAN, Q5JSS6

Function: Essential for spermiogenesis (By similarity)

Animal Models:

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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from COMPARTMENTS:

Compartment	Confidence
cytosol	2
nucleus	2

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Gene Ontology (GO): 1 cellular component term: About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005634	nucleus	IEA	--

Find genes that share ontologies with MEIG1 About GenesLikeMe

(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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Interactions:

Search GeneGlobe Interaction Network for MEIG1

STRING Interaction Network Preview (showing 4 interactants - click image to see more details)

4 Interacting proteins for MEIG1 (Q5JSS6³ ENSP00000367486⁴) via UniProtKB, MINT, STRING, and/or I2D

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
POLR2J	P52435³, ENSP00000292614⁴	I2D: score=1 STRING: ENSP00000292614
SPAG16	Q8N0X2³, ENSP00000332592⁴	I2D: score=1 STRING: ENSP00000332592
ENSG00000230475	ENSP00000405428⁴	STRING: ENSP00000405428
PACRG	ENSP00000337946⁴	STRING: ENSP00000337946

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Gene Ontology (GO): 2 biological process terms: About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0007283	spermatogenesis	IEA	--
GO:0030154	cell differentiation	IEA	--

Find genes that share ontologies with MEIG1 About GenesLikeMe

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
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REFSEQ mRNAs for MEIG1 gene:

NM_001080836.2

Unigene Cluster for MEIG1:

Meiosis expressed gene 1 homolog (mouse)

Hs.257249 [show with all ESTs]

Unigene Representative Sequence: NM_001080836

5 Ensembl transcripts including schematic representations, and UCSC links where relevant:

ENST00000477770 ENST00000496225 ENST00000378240 ENST00000467536 ENST00000407572(uc009xjk.1)

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3 DOTS entries:

DT.70104294 DT.305470 DT.92418680

GeneLoc Exon Structure

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE ¹MOPED, ²PaxDb, and ³MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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MEIG1 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>^2/3
CGAP TAG: AGAATTGGTA

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MEIG1 Protein expression data from MOPED¹, PaxDb² and MaxQB³:

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MEIG1 Protein Expression

SOURCE GeneReport for Unigene cluster: Hs.257249

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(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of chordates.

Orthologs for MEIG1 gene from Selected species (see all 12) About this table

Organism	Taxonomic classification	Gene	Description	Human Similarity	Orthology Type	Details
mouse (Mus musculus)	Mammalia	Meig1¹	meiosis expressed gene 1	87.12(n) 87.5(a)		104362 NM_008579.4 NP_032605.1
chicken (Gallus gallus)	Aves	MEIG1¹	meiosis expressed gene 1 homolog (mouse)	79.31(n) 77.01(a)		769589 XM_001231712.3 XP_001231713.1
lizard (Anolis carolinensis)	Reptilia	MEIG1⁶	meiosis/spermiogenesis associated 1	48(a)	1 ↔ 1	GL343559.1(297523-304536)
tropical clawed frog (Xenopus tropicalis)	Amphibia	meig1¹	meiosis/spermiogenesis associated 1	77.27(n) 79.55(a)		549276 NM_001016522.2 NP_001016522.1
zebrafish (Danio rerio)	Actinopterygii	meig1¹	meiosis expressed gene 1 homolog	68.58(n) 71.26(a)		541343 NM_001013470.1 NP_001013488.1

ENSEMBL Gene Tree for MEIG1 (if available)
TreeFam Gene Tree for MEIG1 (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
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(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, ⁴UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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SNP ID	Valid	Clinical significance	Chr 10 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs139798887^1,2	C	--	14999487(+)	`GATCCA/GGGGCT`	1	--	us2k¹		0	--	--	--	--
rs192272431^1,2		--	14999488(+)	`ATCCGA/GGGCTA`	1	--	us2k¹		0	--	--	--	--
rs142070220^1,2	C	--	14999490(+)	`CCGGGA/GCTACA`	1	--	us2k¹		0	--	--	--	--
rs116212858^1,2	F	--	14999496(+)	`CTACAG/AAGGAA`	1	--	us2k¹		1		WA	118
rs182728147^1,2		--	14999656(+)	`TGAGAC/TGGAGT`	1	--	us2k¹		0	--	--	--	--
rs187900169^1,2		--	14999669(+)	`CCCTCC/TATGCC`	1	--	us2k¹		0	--	--	--	--
rs191100877^1,2		--	14999704(+)	`CTCGGC/TTCACT`	1	--	us2k¹		0	--	--	--	--
rs182607277^1,2		--	14999726(+)	`CTCCAC/TCTCCA`	1	--	us2k¹		0	--	--	--	--
rs113218792^1,2	C,F	--	14999748(+)	`CAAGCA/G/TATTCT`	1	--	us2k¹		1		CSA	2
rs186885813^1,2		--	14999763(+)	`CCTCAC/GCCTCC`	1	--	us2k¹		0	--	--	--	--

HapMap Linkage Disequilibrium report for MEIG1 (15001438 - 15030049 bp)

Structural Variations
Database of Genomic Variants (DGV) Selected variations for MEIG1 (see all 14): About this table

Variant ID	Type	Subtype	PubMed ID
nsv435909	CNV	Deletion	17901297
esv2733506	CNV	Deletion	23290073
nsv831793	CNV	Loss	17160897
nsv466753	CNV	Loss	19166990
nsv894894	CNV	Loss	21882294
nsv24586	CNV	Loss	16902084
dgv69n27	CNV	Gain	19166990
nsv470922	CNV	Gain	18288195
nsv825256	CNV	Gain	20364138
dgv68n27	CNV	Gain	19166990

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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OMIM gene information: 614174 OMIM disorders: --

1 inferred disease relationship from the University of Copenhagen DISEASES database for MEIG1:

Omenn syndrome

Find genes that share disorders with MEIG1 About GenesLikeMe

Export disorders for MEIG1 gene to outside databases

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
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PubMed articles for MEIG1 gene integrated from 10 sources:
(articles sorted by number of sources associating them with MEIG1)

Utopia: connect your pdf to the dynamic
world of online information

Germ cell-specific disruption of the Meig1 gene causes impaired spermiogenesis in mice. (PubMed id 23258628)^{1, 3} Teves M.E....Zhang Z. (Andrology 2013)
MEIG1 is essential for spermiogenesis in mice. (PubMed id 19805151)¹ Zhang Z....Strauss J.F. (Proc. Natl. Acad. Sci. U.S.A. 2009)
Systematic analysis of the protein interaction network for the human transcription machinery reveals the identity of the 7SK capping enzyme. (PubMed id 17643375)¹ Jeronimo C.... Coulombe B. (Mol. Cell 2007)
The DNA sequence and comparative analysis of human chromosome 10. (PubMed id 15164054)² Deloukas P.... Rogers J. (Nature 2004)
Haploinsufficiency for the murine orthologue of Chlamydomonas PF20 disrupts spermatogenesis. (PubMed id 15328412)¹ Zhang Z....Strauss J.F. (Proc. Natl. Acad. Sci. U.S.A. 2004)
Creation of genome-wide protein expression libraries using random activation of gene expression. (PubMed id 11329013)¹ Harrington J.J.... Ducar M. (Nat. Biotechnol. 2001)

(in PubMed, OMIM, and NCBI Bookshelf)
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		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 644890	HGNC: 23429	Ensembl:ENSG00000197889	euGenes: HUgn644890	ECgene: MEIG1
H-InvDB: MEIG1

(According to HUGE)
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(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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Name	Description
PharmGKB entry for MEIG1	Pharmacogenomics, SNPs, Pathways

Intellectual Property for MEIG1 gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from LifeMap Sciences, Inc.)

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Patent Information for MEIG1 gene:
Search GeneIP for patents involving MEIG1

GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search

(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, eBioscience, antibodies-online, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
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GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014 , 21 Aug 2014 , 8 Sep 2014 , 2 Nov 2014 , 8 Jan 2015

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MEIG1 Gene

Meiosis/Spermiogenesis Associated 1

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MEIG1 Gene

Meiosis/Spermiogenesis Associated 1

Aliasesfor MEIG1 gene

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MEIG1 Human Recombinant Protein Products:

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for MEIG1 gene

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