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MEI1 Gene

protein-coding   GIFtS: 40
GCID: GC22P042095

Meiosis Inhibitor 1

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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Meiosis Inhibitor 11 2
Spermatogenesis Associated 381 2
Meiosis Defective Protein 12 3
SPATA382
Meiosis Defective 12
Meiosis Inhibitor Protein 12

External Ids:    HGNC: 286131   Entrez Gene: 1503652   Ensembl: ENSG000001670777   OMIM: 6087975   UniProtKB: Q5TIA13   

Export aliases for MEI1 gene to outside databases

Previous GC identifers: GC22P040426 GC22P025060


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for MEI1 Gene:
MEI1 (meiosis inhibitor 1) is a protein-coding gene.

UniProtKB/Swiss-Prot: MEI1_HUMAN, Q5TIA1
Function: Required for normal meiotic chromosome synapsis. May be involved in the formation of meiotic
double-strand breaks (DSBs) in spermatocytes (By similarity)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000022.10  NT_011520.13  NC_018933.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the MEI1 gene promoter:
         STAT1   GATA-3   AML1a   CUTL1   GATA-2   GATA-1   PPAR-alpha   FOXJ2 (long isoform)   FOXJ2   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search Chromatin IP Primers for MEI1

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat MEI1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 22q13.2   Ensembl cytogenetic band:  22q13.2   HGNC cytogenetic band: 22q13.2

MEI1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
MEI1 gene location

GeneLoc information about chromosome 22         GeneLoc Exon Structure

GeneLoc location for GC22P042095:  view genomic region     (about GC identifiers)

Start:
42,095,503 bp from pter      End:
42,195,460 bp from pter
Size:
99,958 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., and/or eBioscience, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: MEI1_HUMAN, Q5TIA1 (See protein sequence)
Recommended Name: Meiosis inhibitor protein 1  
Size: 1274 amino acids; 141161 Da
Sequence caution: Sequence=AAH25400.1; Type=Erroneous initiation; Sequence=AAH35720.1; Type=Erroneous initiation;
Secondary accessions: B7Z745 Q1XAP1 Q1XAP2 Q8IYJ5 Q8N5K5 Q8N9H3 Q8TC68
Alternative splicing: 7 isoforms:  Q5TIA1-1   Q5TIA1-2   Q5TIA1-3   Q5TIA1-4   Q5TIA1-5   Q5TIA1-6   Q5TIA1-7   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for MEI1: NX_Q5TIA1

Explore proteomics data for MEI1 at MOPED


See MEI1 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins: NP_689726.3  
ENSEMBL proteins: 
 ENSP00000384115   ENSP00000385298   ENSP00000410973   ENSP00000444225   ENSP00000382978  
 ENSP00000437436   ENSP00000300398  

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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1 InterPro protein domain:
 IPR016024 ARM-type_fold

Graphical View of Domain Structure for InterPro Entry Q5TIA1

ProtoNet protein and cluster: Q5TIA1


Find genes that share domains with MEI1           About GenesLikeMe


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Molecular Function:

     UniProtKB/Swiss-Prot Summary: MEI1_HUMAN, Q5TIA1
Function: Required for normal meiotic chromosome synapsis. May be involved in the formation of meiotic
double-strand breaks (DSBs) in spermatocytes (By similarity)

     Gene Ontology (GO): 1 molecular function term:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005488binding ----
     
Find genes that share ontologies with MEI1           About GenesLikeMe


Phenotypes:
     2 MGI mutant phenotypes (inferred from 1 allele(MGI details for Mei1):
 endocrine/exocrine gland  reproductive system 

Find genes that share phenotypes with MEI1           About GenesLikeMe

Animal Models:
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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from COMPARTMENTS: 

CompartmentConfidence
plasma membrane3
cytoskeleton1
cytosol1
nucleus1

(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for MEI1
Interactions:

    Search GeneGlobe Interaction Network for MEI1

STRING Interaction Network Preview (showing 1 interactants - click image to see more details)

1 Interacting protein for MEI1 (ENSP000003841154) via UniProtKB, MINT, STRING, and/or I2D
InteractantInteraction Details
GeneCardExternal ID(s)
NEDD8ENSP000002504954STRING: ENSP00000250495
About this table

Gene Ontology (GO): 4 biological process terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0007126meiotic nuclear division ----
GO:0007141male meiosis I IEA--
GO:0007276gamete generation ----
GO:0007286spermatid development IEA--

Find genes that share ontologies with MEI1           About GenesLikeMe



(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Tocris compounds for MEI1



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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REFSEQ mRNAs for MEI1 gene: 
NM_152513.3  

Unigene Cluster for MEI1:

Meiosis inhibitor 1
Hs.116419  [show with all ESTs]
Unigene Representative Sequence: BC144638
18 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000401548(uc003baz.1 uc011apd.1 uc003bbb.1 uc003bbc.1 uc003bbd.1 uc010gyn.1 uc003bbe.1)
ENST00000492484 ENST00000482055 ENST00000476614 ENST00000460702 ENST00000462246
ENST00000473736 ENST00000462450 ENST00000498456 ENST00000487535 ENST00000476893(uc011apf.1 uc010gyo.1 uc003bbg.2)
ENST00000484966 ENST00000403492 ENST00000423900 ENST00000540833(uc003bay.3)
ENST00000400107(uc010gym.1) ENST00000540880 ENST00000300398
miRNA
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Additional mRNA sequence: 

AK092934.1 AK093341.1 AK094461.1 AK097834.1 AK301391.1 AK301435.1 AK303957.1 AK307341.1 
AK311552.1 AY952376.1 AY952377.1 BC025400.1 BC029582.1 BC032248.1 BC035720.1 BC070111.1 
BC144638.1 

17 DOTS entries:

DT.99999182  DT.97827903  DT.91739420  DT.100698142  DT.97781852  DT.99930446  DT.102823830  DT.95155563 
DT.99999027  DT.120666291  DT.404273  DT.99932279  DT.120666304  DT.100708092  DT.100788520  DT.120666301 
DT.91859734 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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MEI1 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: ACCCTGCTCC
MEI1 Expression
About this image

MEI1 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

MEI1 Protein Expression

SOURCE GeneReport for Unigene cluster: Hs.116419

UniProtKB/Swiss-Prot: MEI1_HUMAN, Q5TIA1
Tissue specificity: Expressed predominantly in testis. Weakly expressed in spleen and thymus

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In Situ
Assay Products:
 

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for MEI1

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of chordates.

Orthologs for MEI1 gene from Selected species (see all 11)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia Mei11 , 5 meiosis defective 11, 5 83.04(n)1
80.62(a)1
  15 (38.41 cM)5
743691  NM_028897.31  NP_083173.21 
 820701175 
chicken
(Gallus gallus)
Aves MEI11 meiosis inhibitor 1 62.81(n)
55.42(a)
  417985  XM_416224.4  XP_416224.4 
lizard
(Anolis carolinensis)
Reptilia --
--
Uncharacterized protein
56(a)
50(a)
many → 1
many → 1
5(26667734-26688016)
5(26690290-26707521)
tropical clawed frog
(Xenopus tropicalis)
Amphibia mei11 meiosis inhibitor 1 56.32(n)
52.18(a)
  100491257  XM_002932165.2  XP_002932211.2 
zebrafish
(Danio rerio)
Actinopterygii MEI16
meiosis inhibitor 1
35(a)
1 ↔ 1
20(49298451-49302107) ENSDARG00000090972


ENSEMBL Gene Tree for MEI1 (if available)
TreeFam Gene Tree for MEI1 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Polymorphic Variants from UniProtKB/Swiss-Prot
MEI1_HUMAN, Q5TIA1: Genetic variation in MEI1 may predispose European American but not Israeli men to azoospermia by
meiotic arrest


Selected SNPs for MEI1 (see all 2228)    About this table                                 

Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 22 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs664962481,2
C--26108503(+) TTTTT-/TTCTATT 1 -- int11Minor allele frequency- TT:0.00NA 2
rs1818926701,2
--42094754(+) CCCAGA/GCTGGA 1 -- us2k10--------
rs1114834871,2
C--42094872(+) CTCACC/GCAGCC 1 -- us2k10--------
rs1114173701,2
C,F--42095005(+) ACCTCC/TGCCTC 1 -- us2k11Minor allele frequency- T:0.50CSA 2
rs20038161,2
C,A,H--42095140(-) AGATCC/AAGACC 1 -- us2k17Minor allele frequency- A:0.35NA WA EA 366
rs1857594481,2
C--42095155(+) ATCTCA/GTGATC 1 -- us2k10--------
rs746219381,2
C,F--42095277(+) AATGCC/TCCCTA 1 -- us2k11Minor allele frequency- T:0.29WA 118
rs1905569081,2
--42095416(+) TGCTCA/GTCTGA 1 -- us2k10--------
rs731613501,2
C--42095451(+) AGGCGC/TATTCC 1 -- us2k10--------
rs7438321,2
C,F,A,H--42095464(-) CCTGCG/ATCGGT 1 -- us2k113Minor allele frequency- A:0.04NA NS EA 1456

HapMap Linkage Disequilibrium report for MEI1 (42095503 - 42195460 bp)

Structural Variations
     Database of Genomic Variants (DGV) Selected variations for MEI1 (see all 13):    About this table    
Variant IDTypeSubtypePubMed ID
esv1676083CNV Deletion17803354
esv2439659CNV Deletion19546169
esv2134270CNV Deletion18987734
esv2724269CNV Deletion23290073
esv2451668CNV Deletion19546169
esv3963CNV Deletion18987735
esv273219CNV Insertion20981092
nsv3640CNV Insertion18451855
esv8122CNV Loss19470904
nsv524585CNV Loss19592680

Site Specific Mutation Identification with PCR Assays
SeqTarget long-range PCR primers for resequencing MEI1
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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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OMIM gene information: 608797    OMIM disorders: --


Find genes that share disorders with MEI1           About GenesLikeMe

Genetic Association Database (GAD): MEI1
Human Genome Epidemiology (HuGE) Navigator: MEI1 (2 documents)

Export disorders for MEI1 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for MEI1 gene integrated from 10 sources:
(articles sorted by number of sources associating them with MEI1)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Polymorphic alleles of the human MEI1 gene are associated with human azoospermia by meiotic arrest. (PubMed id 16683055)1, 2, 3 Sato H.... Sengoku K. (J. Hum. Genet. 2006)
  2. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614)1, 4 Rose J.E....Uhl G.R. (Mol. Med. 2010)
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (Nat. Genet. 2004)
  4. Analysis of Nedd8-associated polypeptides: a model for deciphering the pathway for ubiquitin-like modifications. (PubMed id 16503656)1 Norman J.A. and Shiekhattar R. (Biochemistry 2006)
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S.... Malek J. (Genome Res. 2004)
  6. Positional cloning and characterization of Mei1, a vertebrate-specific gene required for normal meiotic chromosome synapsis in mice. (PubMed id 14668445)1 Libby B.J....Schimenti J.C. (Proc. Natl. Acad. Sci. U.S.A. 2003)
  7. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
  8. The DNA sequence of human chromosome 22. (PubMed id 10591208)2 Dunham I.... Wright H. (Nature 1999)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 150365 HGNC: 28613 Ensembl:ENSG00000167077 euGenes: HUgn150365 ECgene: MEI1
H-InvDB: MEI1

(According to HUGE)
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(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for MEI1 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for MEI1 gene:
Search GeneIP for patents involving MEI1

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, eBioscience, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014 , 21 Aug 2014 , 8 Sep 2014

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