MEGF6 Gene
protein-coding GIFtS : 50
GCID: GC01 M003396
multiple EGF-like-domains 6 (Previous names: EGF-like-domain, multiple 3 ) (Previous symbol: EGFL3 )
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Aliasesfor MEGF6 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Multiple EGF-Like-Domains 6 1 2 Multiple EGF-Like Domains Protein 62 3 EGFL31 2 3 5 EGF-Like Protein 32 3 EGF-Like-Domain, Multiple 31 2 Multiple Epidermal Growth Factor-Like Domains Protein 62 Epidermal Growth Factor-Like Protein 32 3 KIAA08153
Export aliases for MEGF6 gene to outside databases Previous GC identifer: GC01M002699
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Summariesfor MEGF6 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section --
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Genomic Viewsfor MEGF6 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000001.10 NC_018912.1 NT_004350.19 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the MEGF6 gene promoter: HOXA9B HOXA9 NRSF form 1 NRSF form 2 Meis-1b Meis-1 Other transcription factors Search SABiosciences Chromatin IP Primers for MEGF6 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat MEGF6
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 1p36.3 Ensembl cytogenetic band: 1p36.32 HGNC cytogenetic band: 1p36.3 MEGF6 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 1 GeneLoc Exon Structure
GeneLoc location for GC01M003396: view genomic region
(about GC identifiers )
Start:
3,404,506 bp from pter
End:
3,528,059 bp from pter
Size:
123,554 bases
Orientation:
minus strand
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Proteinsfor MEGF6 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: MEGF6_HUMAN, O75095 (See
protein sequence )Recommended Name: Multiple epidermal growth factor-like domains protein 6 precursor Size : 1541 amino acids; 161185 Da
Subcellular location : Secreted (Potential)
Sequence caution : Sequence=BAA32467.2; Type=Erroneous initiation; Sequence=BAE19678.1; Type=Erroneous initiation;Note=Translation N-terminally shortened; Sequence=BAE19678.1; Type=Frameshift; Positions=1522;
Secondary accessions : Q4AC86 Q5VV39Alternative splicing : 2 isoforms : O75095-1 O75095-2 (No experimental confirmation available)Explore the universe of human proteins at neXtProt for MEGF6: NX_O75095 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_O75095 MEGF6 Protein expression data from MOPED and PaxDb : About this image REFSEQ proteins: NP_001400.3 ENSEMBL proteins: ENSP00000419033 ENSP00000294599 ENSP00000348982 ENSP00000420386 Human Recombinant Protein Products for MEGF6: Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0005575 cellular_component
ND -- GO:0005576 extracellular region
IEA --
MEGF6 for ontologies About GeneDecksing MEGF6 Antibody Products: Assay Products for MEGF6:
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Protein
Domains / Familiesfor MEGF6 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
MEGF6 for domains About GeneDecksing 5/7 InterPro domains/families (see all 7 ):
Graphical View of Domain Structure for InterPro Entry O75095 ProtoNet protein and cluster: O75095
1 Blocks protein family : IPB002049 Laminin-type EGF-like domain UniProtKB/Swiss-Prot: MEGF6_HUMAN, O75095 Similarity : Contains 27 EGF-like domainsSimilarity : Contains 1 EMI domain
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Functionfor MEGF6 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory ,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase ,
shRNA from
OriGene ,
Sirion Biotech ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Sirion Biotech ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
Sirion Biotech ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0005509 calcium ion binding
NAS -- GO:0005515 protein binding
IPI --
MEGF6 for ontologies About GeneDecksing Phenotypes: 1 GenomeRNAi human phenotype for MEGF6 :Animal Models: Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for MEGF6 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for MEGF6OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: MEGF6 (NM_001409 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for MEGF6 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat MEGF6
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for MEGF6
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Pathways & Interactionsfor MEGF6 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for MEGF6 STRING Interaction
Network Preview (showing 5 interactants - click image to see 16)5/19 Interacting proteins for MEGF6 (O75095 1 , 2 , 3 ENSP00000348982 4 ) via UniProtKB, MINT, STRING , and/or I2D (see all 19 )About this table Gene Ontology (GO): 1 biological process term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0008150 biological_process
ND --
MEGF6 for ontologies About GeneDecksing
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Drugs & Compoundsfor MEGF6 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for MEGF6 Search CenterWatch for drugs/clinical trials and news about MEGF6
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Transcriptsfor MEGF6 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
Sirion Biotech ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for MEGF6 gene: NM_001409.3 Unigene Cluster for MEGF6:
Multiple EGF-like-domains 6 Hs.593645 [show with all ESTs ] Unigene Representative Sequence: NM_001409 7 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000485002 ENST00000294599 (uc001akk.3 ) ENST00000356575 (uc001akl.3 )ENST00000494257 ENST00000491842 ENST00000475790 ENST00000461795 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for MEGF6 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for MEGF6OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: MEGF6 (NM_001409 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for MEGF6 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat MEGF6
Additional cDNA sequence: AB011539.2 AB231860.1 AF086226.1 AF086414.1
5 DOTS entries : DT.407971 DT.40296816
DT.310825 DT.100839197 DT.95348828 24/97 AceView cDNA sequences (see all 97 ):
AI079393 BM673928 BM931757 AI094518 AI082299 AB011539 AW769184 W07347 CB123871 BM996630 AA360986 AI476058 BE336695 BU616343 BU501408 BM715446 BM972712 BX102954 AJ709090 AF086226 BM712950 BE206166 CR615300 AF086414 GeneLoc Exon Structure
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Expression for MEGF6 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section MEGF6 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: TATCAAAACAAbout this image MEGF6 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table
See MEGF6 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for MEGF6 SOURCE GeneReport for Unigene cluster: Hs.593645 SABiosciences Custom PCR Arrays for MEGF6 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for MEGF6Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat MEGF6 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat MEGF6 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat MEGF6 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for MEGF6
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Orthologsfor MEGF6 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of animals.
Orthologs for MEGF6 gene from 4/16 species (see all 16 ) About this table
ENSEMBL Gene Tree for MEGF6 (if available)TreeFam Gene Tree for MEGF6 (if available)
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Paralogsfor MEGF6 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for MEGF6 gene NAGPA 2 STAB2 2 STAB1 2 MEGF10 2 SCARF2 2 MEGF11 2 TNFAIP6 2 SCARF1 2 PEAR1 2 6 SIMAP similar genes for MEGF6 using alignment to 3 protein entries: MEGF6_HUMAN (see all proteins ):PROC NELL2 MEGF11 MEGF10 PROS1 PEAR1
MEGF6 for paralogs About GeneDecksing 1 Pseudogenes.org Pseudogene for MEGF6 PGOHUM00000238263
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Genomic Variantsfor MEGF6 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 1 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for MEGF6 (3404506 - 3528059 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 11 variations for MEGF6 10 CNVs : 9868 29825 34822 34821 97264 9867 3278 34820 29824 31597 1 Indel : 69579
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing MEGF6
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Disorders
/ Diseasesfor MEGF6 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
MEGF6 for disorders About GeneDecksing
OMIM gene information: 604266
OMIM disorders : --6 diseases for MEGF6 : About MalaCards marfan syndrome macular degeneration neuroendocrine tumor ataxia pancreatic cancer pancreatitis Export disorders for MEGF6 gene to outside databases
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Publicationsfor MEGF6 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for MEGF6 gene, integrated from 9 sources (see all 12 ): (articles sorted by number of sources associating them with MEGF6) Utopia : connect your pdf to the dynamic world of online information
Identification of high-molecular-weight proteins with multiple EGF- like motifs by motif-trap screening. (PubMed id 9693030) 1 , 2 , 3 Nakayama M.... Ohara O. (1998) The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414) 1 , 2 Gregory S.G.... Bentley D.R. (2006) Construction of expression-ready cDNA clones for KIAA genes: manual curation of 330 KIAA cDNA clones. (PubMed id 12168954) 1 , 2 Nakajima D.... Nagase T. (2002) Comparison of an expanded ataxia interactome with pat ient medical records reveals a relationship between macular degeneration and at axia. (PubMed id 21078624) 1 Kahle J.J....Zoghbi H.Y. (2011) Regulation of epidermal growth factor receptor traffi cking by lysine deacetylase HDAC6. (PubMed id 20029029) 1 Deribe Y.L....Dikic I. (2009) Identification of multi-SH3 domain-containing protein interactome in pancreatic cancer: a yeast two-hybrid approach. (PubMed id 18654987) 1 Thalappilly S....Dusetti N.J. (2008) A protein-protein interaction network for human inherited ataxias and disorders of Purkinje cell degeneration. (PubMed id 16713569) 1 Lim J.... Zoghbi H.Y. (2006) Microfibril-associated glycoprotein-2 interacts with fibrillin-1 and fibrillin-2 suggesting a role for MAGP-2 in elastic fiber assembly. (PubMed id 12122015) 1 Penner A.S....Shipley J.M. (2002) Normalization and subtraction: two approaches to facilitate gene discovery. (PubMed id 8889548) 1 Bonaldo M.F.... Soares M.B. (1996) Evidence of human thrombomodulin domain as a novel angiogenic factor. (PubMed id 15795324) 9 Shi C.S....Wu H.L. (2005)
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External Searches for MEGF6 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing MEGF6 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing MEGF6 gene
(According to HUGE )
About This Section
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Specialized Databases showing MEGF6 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for MEGF6 Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for MEGF6 gene: Search GeneIP for patents involving MEGF6 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor MEGF6 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 and Sirion Biotech , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript , LifeMap BioReagents , and Sirion Biotech , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences , In Situ Hybridization Assays from Advanced Cell Diagnostics , Animal models from inGenious Targeting Laboratory )About This Section
Browse OriGene Antibodies OriGene shRNA RFP for MEGF6 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for MEGF6 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for MEGF6 OriGene Protein Over-expression Lysate for MEGF6 Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for MEGF6 OriGene 3'-UTR Clone for MEGF6 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for MEGF6 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for MEGF6 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
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QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat MEGF6 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing MEGF6 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat MEGF6 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat MEGF6 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat MEGF6 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat MEGF6
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