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Aliases for MEG9 Gene

Subcategory (RNA class) for MEG9 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for MEG9 Gene

  • Maternally Expressed 9 (Non-Protein Coding) 2 3 5
  • Long Intergenic Non-Protein Coding RNA 584 2 3
  • LINC00584 3

External Ids for MEG9 Gene

Previous GeneCards Identifiers for MEG9 Gene

  • GC14P101754
  • GC14P101847
  • GC14P101988
  • GC14P102187
  • GC14P101278
  • GC14P101898
  • GC14P102212
  • GC14P102378

Summaries for MEG9 Gene

GeneCards Summary for MEG9 Gene

MEG9 (Maternally Expressed 9 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MEG9 Gene

Genomics for MEG9 Gene

Regulatory Elements for MEG9 Gene

Enhancers for MEG9 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH14F101070 1.3 Ensembl ENCODE 14 +3.4 3448 4.9 SIN3A BRCA1 ZNF2 GLIS2 FOS ZHX2 TSHZ1 ZNF518A MBD2 SMARCA4 MEG9 LOC105370670 GC14P102734
GH14F101849 1.7 FANTOM5 Ensembl ENCODE 10 +782.9 782890 7.2 HDGF PKNOX1 MLX CREB3L1 WRNIP1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 PPP2R5C SNHG23 RPL26P4 MEG9 ENSG00000271780 WDR20 NPM1P20 GC14P102735
GH14F101096 1.1 FANTOM5 ENCODE 11.4 +28.4 28437 3.2 CTCF SUZ12 JUN ZIC2 ZNF335 GLIS2 ZNF366 POLR2A SCRT2 PATZ1 RTL1 LOC105370670 MEG9 MIR369 MIR409 MIR410 MIR412 MIR541 MIR656 MIR154
GH14F101077 0.6 ENCODE 8 +7.7 7685 1.1 ZNF146 ZMYM3 ZNF766 POLR2A SMARCA4 KDM1A FOXP2 EZH2 LOC105370670 MEG9 NDUFB3P4 GC14P102734
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MEG9 on UCSC Golden Path with GeneCards custom track

Genomic Location for MEG9 Gene

Chromosome:
14
Start:
101,069,911 bp from pter
End:
101,072,937 bp from pter
Size:
3,027 bases
Orientation:
Plus strand

Genomic View for MEG9 Gene

Genes around MEG9 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MEG9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MEG9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MEG9 Gene

Proteins for MEG9 Gene

Post-translational modifications for MEG9 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MEG9 Gene

Domains & Families for MEG9 Gene

Gene Families for MEG9 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MEG9: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MEG9 Gene

Function for MEG9 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MEG9 Gene

Localization for MEG9 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MEG9 Gene

Pathways & Interactions for MEG9 Gene

No Data Available

Interacting Proteins for MEG9 Gene

Gene Ontology (GO) - Biological Process for MEG9 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MEG9 Gene

Transcripts for MEG9 Gene

mRNA/cDNA for MEG9 Gene

(3) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MEG9 Gene

Maternally expressed 9 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MEG9 Gene

No ASD Table

Relevant External Links for MEG9 Gene

GeneLoc Exon Structure for
MEG9
ECgene alternative splicing isoforms for
MEG9

Expression for MEG9 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MEG9 Gene

mRNA differential expression in normal tissues according to GTEx for MEG9 Gene

This gene is overexpressed in Pituitary (x9.6), Ovary (x5.5), and Adrenal Gland (x4.1).

NURSA nuclear receptor signaling pathways regulating expression of MEG9 Gene:

MEG9

SOURCE GeneReport for Unigene cluster for MEG9 Gene:

Hs.301755
genes like me logo Genes that share expression patterns with MEG9: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MEG9 Gene

Orthologs for MEG9 Gene

Evolution for MEG9 Gene

ENSEMBL:
Gene Tree for MEG9 (if available)
TreeFam:
Gene Tree for MEG9 (if available)

No data available for Orthologs for MEG9 Gene

Paralogs for MEG9 Gene

No data available for Paralogs for MEG9 Gene

Variants for MEG9 Gene

Sequence variations from dbSNP and Humsavar for MEG9 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type
rs10130558 -- 101,072,095(+) GCTGG(C/T)TGGGA nc-transcript-variant
rs10141509 -- 101,072,135(+) ACGGG(C/T)GGGTG nc-transcript-variant
rs10141627 -- 101,072,276(+) TGATT(C/T)GGAAA nc-transcript-variant
rs10151229 -- 101,067,970(+) ATCAC(A/G)TTCTA upstream-variant-2KB
rs10674093 -- 101,071,092(+) GCAGC(-/ACTGG)ACAGG nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for MEG9 Gene

Variant ID Type Subtype PubMed ID
nsv1040993 CNV gain 25217958
nsv1041303 CNV gain 25217958
nsv509551 CNV insertion 20534489
nsv565859 CNV gain 21841781
nsv565860 CNV gain 21841781

Relevant External Links for MEG9 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MEG9

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MEG9 Gene

Disorders for MEG9 Gene

Relevant External Links for MEG9

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MEG9

No disorders were found for MEG9 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MEG9 Gene

Publications for MEG9 Gene

  1. At least ten genes define the imprinted Dlk1-Dio3 cluster on mouse chromosome 12qF1. (PMID: 19194500) Hagan J.P. … Croce C.M. (PLoS ONE 2009) 2 3 64
  2. Identification of a candidate gene for astigmatism. (PMID: 23322567) Lopes M.C. … Hammond C.J. (Invest. Ophthalmol. Vis. Sci. 2013) 3 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for MEG9 Gene

Sources for MEG9 Gene

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