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Aliases for MEF2C-AS1 Gene

Subcategory (RNA class) for MEF2C-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for MEF2C-AS1 Gene

  • MEF2C Antisense RNA 1 2 3 5
  • CTC-454M9.1 3

External Ids for MEF2C-AS1 Gene

Previous GeneCards Identifiers for MEF2C-AS1 Gene

  • GC05P088189
  • GC05P088192

Summaries for MEF2C-AS1 Gene

GeneCards Summary for MEF2C-AS1 Gene

MEF2C-AS1 (MEF2C Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for MEF2C-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MEF2C-AS1 Gene

Genomics for MEF2C-AS1 Gene

Regulatory Elements for MEF2C-AS1 Gene

Enhancers for MEF2C-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05H088878 3.1 VISTA FANTOM5 Ensembl ENCODE dbSUPER 8.4 +1.8 1810 12.3 PKNOX1 ARNT SIN3A FEZF1 ZNF2 ZNF766 ZNF143 FOS SP3 REST MEF2C-AS1 ENSG00000250831 MEF2C PIR46355
GH05H088822 1.9 FANTOM5 Ensembl ENCODE dbSUPER 10.8 -54.6 -54576 12.6 HDGF FOXA2 PKNOX1 ATF1 SIN3A FEZF1 ZNF2 YY1 TCF12 ATF7 TMEM161B MEF2C-AS1 MEF2C ENSG00000250377
GH05H088671 1.8 FANTOM5 Ensembl ENCODE dbSUPER 4.2 -208.4 -208396 7 ATF1 ARNT ZNF133 SIN3A FEZF1 ZNF2 GLIS2 ELK1 KLF7 ZNF548 TMEM161B MEF2C MEF2C-AS1 MEF2C-AS2 MIR9-2
GH05H089300 1.7 FANTOM5 Ensembl ENCODE dbSUPER 4.4 +418.8 418811 2.9 PKNOX1 TBL1XR1 BACH1 BMI1 EBF1 BATF RELA POLR2A EED ATF7 MEF2C-AS1 MEF2C LOC105379074 GC05P089136
GH05H088730 1.8 FANTOM5 Ensembl ENCODE dbSUPER 4 -148.9 -148858 8.9 PKNOX1 ZNF133 BMI1 BATF RAD21 TCF12 SCRT2 ZNF143 ATF7 ETV6 MEF2C ENSG00000250377 MEF2C-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MEF2C-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for MEF2C-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000183681 -1028 5401 PKNOX1 ARNT SIN3A FEZF1 ZNF2 ZNF766 SP3 REST CBX8 ZNF610

Genomic Locations for MEF2C-AS1 Gene

Genomic Locations for MEF2C-AS1 Gene
583,071 bases
Plus strand

Genomic View for MEF2C-AS1 Gene

Genes around MEF2C-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MEF2C-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MEF2C-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MEF2C-AS1 Gene

Proteins for MEF2C-AS1 Gene

Post-translational modifications for MEF2C-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MEF2C-AS1 Gene

Domains & Families for MEF2C-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MEF2C-AS1 Gene

Function for MEF2C-AS1 Gene

Phenotypes From GWAS Catalog for MEF2C-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MEF2C-AS1 Gene

Localization for MEF2C-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MEF2C-AS1 Gene

Pathways & Interactions for MEF2C-AS1 Gene

SuperPathways for MEF2C-AS1 Gene

No Data Available

Interacting Proteins for MEF2C-AS1 Gene

Gene Ontology (GO) - Biological Process for MEF2C-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for MEF2C-AS1 Gene

Drugs & Compounds for MEF2C-AS1 Gene

No Compound Related Data Available

Transcripts for MEF2C-AS1 Gene

mRNA/cDNA for MEF2C-AS1 Gene

(15) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MEF2C-AS1 Gene

No ASD Table

Relevant External Links for MEF2C-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for MEF2C-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MEF2C-AS1 Gene

genes like me logo Genes that share expression patterns with MEF2C-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MEF2C-AS1 Gene

Orthologs for MEF2C-AS1 Gene

Evolution for MEF2C-AS1 Gene

Gene Tree for MEF2C-AS1 (if available)
Gene Tree for MEF2C-AS1 (if available)

No data available for Orthologs for MEF2C-AS1 Gene

Paralogs for MEF2C-AS1 Gene

No data available for Paralogs for MEF2C-AS1 Gene

Variants for MEF2C-AS1 Gene

Sequence variations from dbSNP and Humsavar for MEF2C-AS1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs529548312 Likely benign 88,883,325(+) AGAAG(A/G)AGGAG intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs560769479 Likely benign 88,883,262(+) GGGGG(A/C/G)CGCGG intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs564254573 Likely benign 88,883,021(+) AGAGA(A/G)AAAAA intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs144197632 Uncertain significance 88,883,254(+) CGCGA(-/G)GGGGG intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs200560914 Uncertain significance 88,883,019(+) AGAGA(A/G)AAAAA intron-variant, upstream-variant-2KB, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for MEF2C-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv980696 CNV duplication 23825009
nsv830386 CNV gain 17160897
nsv527694 CNV loss 19592680
nsv473247 CNV novel sequence insertion 20440878
nsv473063 CNV novel sequence insertion 20440878
nsv471022 CNV loss 18288195
nsv1074317 CNV deletion 25765185
esv3605741 CNV loss 21293372
esv3424791 CNV insertion 20981092
esv3397602 CNV duplication 20981092
esv3381980 CNV insertion 20981092
esv3308122 CNV mobile element insertion 20981092

Relevant External Links for MEF2C-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MEF2C-AS1 Gene

Disorders for MEF2C-AS1 Gene

Relevant External Links for MEF2C-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for MEF2C-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MEF2C-AS1 Gene

Publications for MEF2C-AS1 Gene

  1. Analysis of long non-coding RNA expression profiles in gastric cancer. (PMID: 23801869) Cao WJ … Zhang ZY (World journal of gastroenterology 2013) 2 3 60
  2. Multistage genome-wide association meta-analyses identified two new loci for bone mineral density. (PMID: 24249740) Zhang L … Deng HW (Human molecular genetics 2014) 3 60
  3. Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans. (PMID: 23400010) Del-Aguila JL … Boerwinkle E (The pharmacogenomics journal 2014) 3 60
  4. Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease. (PMID: 24162737) Lambert JC … Amouyel P (Nature genetics 2013) 3 60
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60

Products for MEF2C-AS1 Gene

Sources for MEF2C-AS1 Gene

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