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Aliases for MEF2C-AS1 Gene

Subcategory (RNA class) for MEF2C-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for MEF2C-AS1 Gene

  • MEF2C Antisense RNA 1 2 3 5
  • CTC-454M9.1 3

External Ids for MEF2C-AS1 Gene

Previous GeneCards Identifiers for MEF2C-AS1 Gene

  • GC05P088189
  • GC05P088192

Summaries for MEF2C-AS1 Gene

GeneCards Summary for MEF2C-AS1 Gene

MEF2C-AS1 (MEF2C Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MEF2C-AS1 Gene

Genomics for MEF2C-AS1 Gene

Regulatory Elements for MEF2C-AS1 Gene

Enhancers for MEF2C-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05F088822 1.4 FANTOM5 Ensembl ENCODE 10.8 -54.6 -54576 12.6 HDGF PKNOX1 MLX ZFP64 ARID4B DMAP1 FEZF1 ZNF2 YY1 CBX5 TMEM161B MEF2C-AS1 MEF2C LOC105379071
GH05F088878 2.1 VISTA FANTOM5 ENCODE 8.4 +1.8 1810 12.3 PKNOX1 WRNIP1 SIN3A FEZF1 ZNF2 FOS ZNF263 SP3 REST TBX21 MEF2C-AS1 ENSG00000250831 MEF2C PIR46355
GH05F088951 1 Ensembl ENCODE 5.9 +71.4 71408 5.6 PKNOX1 FEZF1 ZNF2 ZNF766 MEF2D SMARCA4 GLIS1 PBX2 MYNN HMBOX1 MEF2C-AS1 GC05P088942 PIR47838
GH05F089190 0.8 Ensembl ENCODE 5.4 +307.9 307869 2.0 MEF2C-AS1 GC05P089136 LOC105379074
GH05F089394 0.6 Ensembl ENCODE 4.5 +513.0 512973 3.4 HDAC1 TBL1XR1 BMI1 ZNF2 RAD21 CHAMP1 ZNF335 CBX5 ZNF143 ZNF391 MEF2C-AS1 LOC105379074 LOC105379073
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around MEF2C-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for MEF2C-AS1 Gene

Chromosome:
5
Start:
88,883,328 bp from pter
End:
89,466,398 bp from pter
Size:
583,071 bases
Orientation:
Plus strand

Genomic View for MEF2C-AS1 Gene

Genes around MEF2C-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MEF2C-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MEF2C-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MEF2C-AS1 Gene

Proteins for MEF2C-AS1 Gene

Post-translational modifications for MEF2C-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MEF2C-AS1 Gene

Domains & Families for MEF2C-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MEF2C-AS1 Gene

Function for MEF2C-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MEF2C-AS1 Gene

Localization for MEF2C-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MEF2C-AS1 Gene

Pathways & Interactions for MEF2C-AS1 Gene

SuperPathways for MEF2C-AS1 Gene

No Data Available

Interacting Proteins for MEF2C-AS1 Gene

Gene Ontology (GO) - Biological Process for MEF2C-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MEF2C-AS1 Gene

Transcripts for MEF2C-AS1 Gene

mRNA/cDNA for MEF2C-AS1 Gene

(14) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MEF2C-AS1 Gene

No ASD Table

Relevant External Links for MEF2C-AS1 Gene

GeneLoc Exon Structure for
MEF2C-AS1
ECgene alternative splicing isoforms for
MEF2C-AS1

Expression for MEF2C-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MEF2C-AS1 Gene

genes like me logo Genes that share expression patterns with MEF2C-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MEF2C-AS1 Gene

Orthologs for MEF2C-AS1 Gene

Evolution for MEF2C-AS1 Gene

ENSEMBL:
Gene Tree for MEF2C-AS1 (if available)
TreeFam:
Gene Tree for MEF2C-AS1 (if available)

No data available for Orthologs for MEF2C-AS1 Gene

Paralogs for MEF2C-AS1 Gene

No data available for Paralogs for MEF2C-AS1 Gene

Variants for MEF2C-AS1 Gene

Sequence variations from dbSNP and Humsavar for MEF2C-AS1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs10037047 -- 88,924,147(+) GTTCC(A/G)TCAGG intron-variant
rs10037415 -- 89,243,126(+) ACTGA(A/G)TTCTA intron-variant
rs10037512 -- 89,058,858(+) TGTAA(C/T)CTCAT intron-variant
rs10037690 -- 88,902,740(+) TATTA(A/G)TAATT intron-variant
rs10038261 -- 89,221,892(+) ttata(A/C)gagct intron-variant

Structural Variations from Database of Genomic Variants (DGV) for MEF2C-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3308122 CNV mobile element insertion 20981092
esv3381980 CNV insertion 20981092
esv3397602 CNV duplication 20981092
esv3424791 CNV insertion 20981092
esv3605741 CNV loss 21293372
nsv1074317 CNV deletion 25765185
nsv471022 CNV loss 18288195
nsv473063 CNV novel sequence insertion 20440878
nsv473247 CNV novel sequence insertion 20440878
nsv527694 CNV loss 19592680
nsv830386 CNV gain 17160897
nsv980696 CNV duplication 23825009

Relevant External Links for MEF2C-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MEF2C-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MEF2C-AS1 Gene

Disorders for MEF2C-AS1 Gene

Relevant External Links for MEF2C-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MEF2C-AS1

No disorders were found for MEF2C-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MEF2C-AS1 Gene

Publications for MEF2C-AS1 Gene

  1. Analysis of long non-coding RNA expression profiles in gastric cancer. (PMID: 23801869) Cao W.J. … Zhang Z.Y. (World J. Gastroenterol. 2013) 2 3 64
  2. Multistage genome-wide association meta-analyses identified two new loci for bone mineral density. (PMID: 24249740) Zhang L. … Deng H.W. (Hum. Mol. Genet. 2014) 3 64
  3. Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans. (PMID: 23400010) Del-Aguila J.L. … Boerwinkle E. (Pharmacogenomics J. 2013) 3 64
  4. Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease. (PMID: 24162737) Lambert J.C. … Amouyel P. (Nat. Genet. 2013) 3 64
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for MEF2C-AS1 Gene

Sources for MEF2C-AS1 Gene

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