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MEF2BNB-MEF2B Gene

protein-coding   GIFtS: 37
GCID: GC19M019258

MEF2BNB-MEF2B Readthrough

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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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This gene clusters with an RNA gene
Subcategory (RNA class): antisense

Quality score for the ORGUL clustered with this gene is 3

Aliases
MEF2BNB-MEF2B Readthrough1 2
LOC729991-MEF2B2
MEF2B2
LOC729991-MEF2B Readthrough2
Myocyte Enhancer Factor 2B2

External Ids:    HGNC: 399791   Entrez Gene: 42072   Ensembl: ENSG000000644897   UniProtKB: H3BNR14   
ORGUL members:         

Export aliases for MEF2BNB-MEF2B gene to outside databases


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for MEF2BNB-MEF2B Gene:
This gene represents numerous read-through transcripts that span GeneID:729991 and 100271849. Many read-through
transcripts are predicted to be nonsense-mediated decay (NMD) candidates, and are thought to be non-coding. Some
transcripts are predicted to be capable of translation reinitiation at a downstream AUG, resulting in expression
of at least one isoform of myocyte enhancer factor 2B (MEF2B) from this read-through locus. At least one
additional MEF2B variant and isoform can be expressed from a downstream promoter, and is annotated on
GeneID:100271849. (provided by RefSeq, Oct 2010)

GeneCards Summary for MEF2BNB-MEF2B Gene:
MEF2BNB-MEF2B (MEF2BNB-MEF2B readthrough) is a protein-coding gene. An important paralog of this gene is MEF2D.

Gene Wiki entry for MEF2BNB-MEF2B (MEF2B) Gene


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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Regulatory elements:
   Search for regulatory transcription factor binding sites for MEF2BNB-MEF2B
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidMEF2BNB-MEF2B promoter sequence
   Search Chromatin IP Primers for MEF2BNB-MEF2B

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat MEF2BNB-MEF2B


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 19p13.11   Ensembl cytogenetic band:  19p13.11   HGNC cytogenetic band: 19p13.11

MEF2BNB-MEF2B Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
MEF2BNB-MEF2B gene location

GeneLoc information about chromosome 19         GeneLoc Exon Structure

GeneLoc location for GC19M019258:  view genomic region     (about GC identifiers)

Start:
19,256,376 bp from pter      End:
19,303,400 bp from pter
Size:
47,025 bases      Orientation:
minus strand
ORGUL member locations:
Legend (see complete legend)

ORGUL Member Locations for MEF2BNB-MEF2B

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/TrEMBL: H3BNR1 (See protein sequence)
Recommended Name: Protein MEF2BNB-MEF2B  
Size: 382 amino acids; 40459 Da
Caution: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered
as preliminary data

REFSEQ proteins: NP_005910.1  
ENSEMBL proteins: 
 ENSP00000390762   ENSP00000457957   ENSP00000473577   ENSP00000454967   ENSP00000473369  

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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1 InterPro protein domain:
 IPR002100 TF_MADSbox

Graphical View of Domain Structure for InterPro Entry H3BNR1

ProtoNet protein and cluster: H3BNR1

UniProtKB/TrEMBL: H3BNR1
Similarity: Contains 1 MADS-box domain
Similarity: Contains MADS-box domain


Find genes that share domains with MEF2BNB-MEF2B           About GenesLikeMe


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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     Gene Ontology (GO): 5 molecular function terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0003677DNA binding ----
GO:0003700sequence-specific DNA binding transcription factor activity ----
GO:0005515protein binding ----
GO:0042826histone deacetylase binding ----
GO:0046983protein dimerization activity ----
     
Find genes that share ontologies with MEF2BNB-MEF2B           About GenesLikeMe


Phenotypes:
     2 GenomeRNAi human phenotypes for MEF2BNB-MEF2B:
 Decreased viability of wild-ty  Increased G2M DNA content 

Animal Models:
   genOway: Develop your customized and physiologically relevant rodent model for MEF2BNB-MEF2B

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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from UniProtKB/TrEMBL
H3BNR1 : Nucleus (By similarity)

Gene Ontology (GO): 2 cellular component terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005634nucleus ----
GO:0005667transcription factor complex ----

Find genes that share ontologies with MEF2BNB-MEF2B           About GenesLikeMe


(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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SuperPaths for MEF2BNB-MEF2B About   (see all 10)  
See pathways by source

SuperPathContained pathways About
1CDO in myogenesis
CDO in myogenesis1.00
Myogenesis1.00
2Immune response Function of MEF2 in T lymphocytes
Development Role of HDAC and calcium calmodulin dependent kinase CaMK in control of skeletal myogenesis0.38
Immune response Function of MEF2 in T lymphocytes0.38
3L1CAM interactions
Developmental Biology0.63
4Development Angiotensin activation of ERK
Signal transduction IP3 signaling0.43
5fMLP Pathway
Signal transduction Activation of PKC via G Protein coupled receptor0.42


4 BioSystems Pathways for MEF2BNB-MEF2B
    Adipogenesis
SRF and miRs in Smooth Muscle Differentiation and Proliferation
Energy Metabolism
miRs in Muscle Cell Differentiation


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Interactions:

    Search GeneGlobe Interaction Network for MEF2BNB-MEF2B

Gene Ontology (GO): 3 biological process terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0006351transcription, DNA-templated ----
GO:0007507heart development ----
GO:0007517muscle organ development ----

Find genes that share ontologies with MEF2BNB-MEF2B           About GenesLikeMe



(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Small Molecules at EMD Millipore
   Browse drugs & compounds from Enzo Life Sciences
  Browse compounds at ApexBio 

Browse Tocris compounds for MEF2BNB-MEF2B



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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REFSEQ mRNAs for MEF2BNB-MEF2B gene: 
NM_005919.3  

7 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000444486(uc010xqp.1 uc002nlo.2 uc002nlp.2) ENST00000354191(uc010xqo.1)
ENST00000602804 ENST00000514819 ENST00000602276 ENST00000602438 ENST00000602689

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Selected AceView cDNA sequences (see all 245):

CR621883 BQ057040 AW161637 CR609526 BQ055511 BQ186686 BI868835 AL519561 
BI838206 BM824764 BM727433 BU152937 BQ058984 AL560146 X68502 AI499707 
BM804899 AI620727 T29821 BI829979 BQ057946 CB105672 BQ059304 BQ064126 

GeneLoc Exon Structure

Selected Alternative Splicing Database (ASD) splice patterns (SP) for MEF2BNB-MEF2B (see all 13)    About this scheme

ExUns: 1 ^ 2a · 2b · 2c · 2d · 2e · 2f ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7a · 7b ^ 8a · 8b · 8c ^ 9 ^ 10 ^ 11 ^ 12a · 12b · 12c ^ 13a · 13b ^ 14a ·
SP1:                                                              -     -           -     -     -     -     -     -           -           -                     
SP2:                                            -     -           -     -           -     -     -     -     -     -           -           -                     
SP3:                                                                                                                          -           -                     
SP4:                                                                                                                          -                                 
SP5:        -     -     -     -     -     -                       -     -           -                                                                           

ExUns: 14b ^ 15a · 15b ^ 16 ^ 17a · 17b ^ 18
SP1:                          -     -         
SP2:                          -     -         
SP3:        -     -                           
SP4:                          -               
SP5:                                          


ECgene alternative splicing isoforms for MEF2BNB-MEF2B

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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MEF2BNB-MEF2B expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: --
MEF2BNB-MEF2B Expression
About this image

MEF2BNB-MEF2B Protein expression data from MOPED1, PaxDb2 and MaxQB3 --
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(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of eukaryotes.

Orthologs for MEF2BNB-MEF2B gene from Selected species (see all 9)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia Mef2b5 myocyte enhancer factor 2B   --   8 (34.15 cM) 70152778 
chicken
(Gallus gallus)
Aves --
Uncharacterized protein
46(a)
1 → many
28(3363587-3367621)
zebrafish
(Danio rerio)
Actinopterygii mef2b6
myocyte enhancer factor 2b
53(a)
1 → many
22(18412132-18430436) ENSDARG00000093170
worm
(Caenorhabditis elegans)
Secernentea mef-26
Protein MEF-2 (mef-2) mRNA, complete cds
29(a)
1 → many
I(9095957-9100186) WBGene00003182
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes SMP16
RLM16
Putative transcription factor involved in regulati...
MADS-box transcription factor, component of the pr...
14(a)
10(a)
many ↔ many
many ↔ many
II(593506-594864) YBR182C
XVI(379120-381150) YPL089C
rice
(Oryza sativa)
Liliopsida AF141967.12   -- 78.68(n)    AF141967.1 


ENSEMBL Gene Tree for MEF2BNB-MEF2B (if available)
TreeFam Gene Tree for MEF2BNB-MEF2B (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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Paralogs for MEF2BNB-MEF2B gene
MEF2D2  MEF2B2  MEF2C2  MEF2A2  
3 SIMAP similar genes for MEF2BNB-MEF2B using alignment to 1 protein entry:     H3BNR1_HUMAN:
MEF2D    MEF2B    MEF2C

Find genes that share paralogs with MEF2BNB-MEF2B           About GenesLikeMe



(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for MEF2BNB-MEF2B (see all 89)    About this table                                 

Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 19 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1886463311,2
--19283162(+) ACTCCC/TCAGCC 3 -- int10--------
rs22836241,2
C,F--19283180(+) TCTGGT/GGGGCA 3 -- int19Minor allele frequency- G:0.23EA NA WA 1482
rs22836251,2
C,F,H--19283204(+) CATGGT/GCTGTC 3 -- int117Minor allele frequency- G:0.05EA NA NS 2778
rs610610001,2
C,F--19283268(+) GTCCCA/C/TTAGCA 3 -- int15NA WA EA 362
rs129781931,2
C,F--19283277(+) CAGGGC/TCACCA 3 -- int19Minor allele frequency- T:0.26NA WA EA 370
rs1811226291,2
C--19283405(+) GTGAGA/GGAGAA 3 -- int10--------
rs2013943381,2
C--19283463(+) GGGAT-/GGAGGAGA 3 -- int10--------
rs72568111,2
C,F--19283551(+) CCAGGA/GGAAGG 3 -- int18Minor allele frequency- G:0.47NA WA CSA EA 368
rs794061971,2
C,F--19283568(+) AGGACC/TTTCCA 3 -- int11Minor allele frequency- T:0.03EA 120
rs1837923261,2
--19283639(+) CCATCC/TCAGCT 3 -- int10--------

HapMap Linkage Disequilibrium report for MEF2BNB-MEF2B (19256376 - 19303400 bp)

Structural Variations
     Database of Genomic Variants (DGV) 7 variations for MEF2BNB-MEF2B:    About this table    
Variant IDTypeSubtypePubMed ID
esv1336135CNV Deletion17803354
esv2677504CNV Deletion23128226
esv2718291CNV Deletion23290073
nsv833779CNV Loss17160897
nsv911303CNV Loss21882294
esv5981CNV Loss19470904
nsv819543CNV Gain19587683

Site Specific Mutation Identification with PCR Assays
SeqTarget long-range PCR primers for resequencing MEF2BNB-MEF2B
DNA2.0 Custom Variant and Variant Library Synthesis for MEF2BNB-MEF2B

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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  --

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for MEF2BNB-MEF2B gene, integrated from 10 sources (see all 28):
(articles sorted by number of sources associating them with MEF2BNB-MEF2B)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Human SRF-related proteins: DNA-binding properties and potential regulatory targets. (PubMed id 1748287)1, 9 Pollock R. and Treisman R. (Genes Dev. 1991)
  2. Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. (PubMed id 23382691)1 Lauc G....Rudan I. (PLoS Genet. 2013)
  3. Pathway Analysis of ChIP-Seq-Based NRF1 Target Genes Suggests a Logical Hypothesis of their Involvement in the Pathogenesis of Neurodegenerative Diseases. (PubMed id 24250222)1 Satoh J....Yamamoto Y. (Gene Regul Syst Bio 2013)
  4. Systematic and quantitative assessment of the ubiquitin-modified proteome. (PubMed id 21906983)1 Kim W....Gygi S.P. (Mol. Cell 2011)
  5. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614)1 Rose J.E....Uhl G.R. (Mol. Med. 2010)
  6. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PubMed id 20967262)1 Prakash T....Taylor T.D. (PLoS ONE 2010)
  7. Variation at the NFATC2 locus increases the risk of thiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipril and rosiglitazone Medication (DREAM) study. (PubMed id 20628086)1 Bailey S.D....Anand S. (Diabetes Care 2010)
  8. High-density association study of 383 candidate genes for volumetric BMD at the femoral neck and lumbar spine among older men. (PubMed id 19453261)1 Yerges L.M....Zmuda J.M. (J. Bone Miner. Res. 2009)
  9. Gene-centric association signals for lipids and apolipoproteins identified via the HumanCVD BeadChip. (PubMed id 19913121)1 Talmud P.J.... . (Am. J. Hum. Genet. 2009)
  10. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)1 Kimura K.... Sugano S. (Genome Res. 2006)

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(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 4207 HGNC: 39979 AceView: MEF2B Ensembl:ENSG00000064489 euGenes: HUgn4207
ECgene: MEF2BNB-MEF2B H-InvDB: MEF2BNB-MEF2B

(According to HUGE)
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(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for MEF2BNB-MEF2B gene:
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