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Aliases for MED4-AS1 Gene

Subcategory (RNA class) for MED4-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for MED4-AS1 Gene

  • MED4 Antisense RNA 1 2 3 5
  • MED4 Antisense RNA 1 (Non-Protein Coding) 2 3
  • MED4 Antisense RNA (Non-Protein Coding) 2 3
  • MED4-AS 3

External Ids for MED4-AS1 Gene

Previous HGNC Symbols for MED4-AS1 Gene

  • MED4-AS

Previous GeneCards Identifiers for MED4-AS1 Gene

  • GC00U931333
  • GC13P048652

Summaries for MED4-AS1 Gene

GeneCards Summary for MED4-AS1 Gene

MED4-AS1 (MED4 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MED4-AS1 Gene

Genomics for MED4-AS1 Gene

Regulatory Elements for MED4-AS1 Gene

Enhancers for MED4-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13G048109 0.9 Ensembl ENCODE 24.7 +33.5 33472 1.6 SOX13 FOXA2 TEAD1 NFIA JUN NR2F2 GABPA TEAD3 GATA2 NCOR1 MED4-AS1 MED4 POLR2KP2
GH13G048123 1.2 Ensembl ENCODE 13 +48.8 48757 4.1 ELF3 TBP NFIB ZFP64 INSM2 ZNF2 RAD21 ZSCAN5C MIXL1 ZNF654 MED4 ITM2B MED4-AS1 SUCLA2 POLR2KP2
GH13G048093 1.1 ENCODE 13.3 +17.6 17583 2.1 HDGF PKNOX1 MLX CREB3L1 ARNT ARID4B SIN3A DMAP1 YY1 SLC30A9 MED4-AS1 MED4 ITM2B
GH13G048143 1.4 FANTOM5 Ensembl ENCODE dbSUPER 10.4 +67.5 67508 1.5 ATF1 ATF3 MAX MYC RAD21 ATF2 NR2F2 ITM2B MED4-AS1 SUCLA2 RCBTB2 RB1 MED4 POLR2KP2 LOC105370198
GH13G047999 1 ENCODE 11.2 -75.6 -75588 3.2 PKNOX1 MLX WRNIP1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9 SUCLA2 MED4 MED4-AS1 SUCLA2-AS1 PIR59035 GC13P048033 GC13P048032
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MED4-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for MED4-AS1 Gene

Chromosome:
13
Start:
48,077,137 bp from pter
End:
48,079,993 bp from pter
Size:
2,857 bases
Orientation:
Plus strand

Genomic View for MED4-AS1 Gene

Genes around MED4-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MED4-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MED4-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MED4-AS1 Gene

Proteins for MED4-AS1 Gene

Post-translational modifications for MED4-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MED4-AS1 Gene

Domains & Families for MED4-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MED4-AS1 Gene

Function for MED4-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MED4-AS1 Gene

Localization for MED4-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MED4-AS1 Gene

Pathways & Interactions for MED4-AS1 Gene

SuperPathways for MED4-AS1 Gene

No Data Available

Interacting Proteins for MED4-AS1 Gene

Gene Ontology (GO) - Biological Process for MED4-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MED4-AS1 Gene

Drugs & Compounds for MED4-AS1 Gene

No Compound Related Data Available

Transcripts for MED4-AS1 Gene

mRNA/cDNA for MED4-AS1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MED4-AS1 Gene

MED4 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MED4-AS1 Gene

No ASD Table

Relevant External Links for MED4-AS1 Gene

GeneLoc Exon Structure for
MED4-AS1
ECgene alternative splicing isoforms for
MED4-AS1

Expression for MED4-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MED4-AS1 Gene

SOURCE GeneReport for Unigene cluster for MED4-AS1 Gene:

Hs.616241
genes like me logo Genes that share expression patterns with MED4-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MED4-AS1 Gene

Orthologs for MED4-AS1 Gene

Evolution for MED4-AS1 Gene

ENSEMBL:
Gene Tree for MED4-AS1 (if available)
TreeFam:
Gene Tree for MED4-AS1 (if available)

No data available for Orthologs for MED4-AS1 Gene

Paralogs for MED4-AS1 Gene

No data available for Paralogs for MED4-AS1 Gene

Variants for MED4-AS1 Gene

Sequence variations from dbSNP and Humsavar for MED4-AS1 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs1000586458 -- 48,080,320(+) TGAAC(C/T)CGGGA intron-variant, downstream-variant-500B
rs1000586691 -- 48,077,402(+) GTATT(G/T)TTTTT intron-variant
rs1002096498 -- 48,080,290(+) TACTC(A/G)GGAGG intron-variant, downstream-variant-500B
rs1002249498 -- 48,075,778(+) ATTCC(C/T)AGTAT downstream-variant-500B, upstream-variant-2KB, utr-variant-3-prime
rs1003137287 -- 48,079,092(+) ACCTA(C/T)GAAAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for MED4-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv832601 CNV gain 17160897

Relevant External Links for MED4-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MED4-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MED4-AS1 Gene

Disorders for MED4-AS1 Gene

Relevant External Links for MED4-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MED4-AS1

No disorders were found for MED4-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MED4-AS1 Gene

Publications for MED4-AS1 Gene

  1. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington J.J. … Ducar M. (Nat. Biotechnol. 2001) 3 64

Products for MED4-AS1 Gene

Sources for MED4-AS1 Gene

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