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Aliases for MED13 Gene

Aliases for MED13 Gene

  • Mediator Complex Subunit 13 2 3 4 5
  • Thyroid Hormone Receptor-Associated Protein Complex 240 KDa Component 3 4
  • Vitamin D3 Receptor-Interacting Protein Complex Component DRIP250 3 4
  • Activator-Recruited Cofactor 250 KDa Component 3 4
  • Thyroid Hormone Receptor-Associated Protein 1 3 4
  • DRIP250 3 4
  • TRAP240 3 4
  • THRAP1 3 4
  • ARC250 3 4
  • Thyroid Hormone Receptor-Associated Protein Complex Component TRAP240 3
  • Mediator Of RNA Polymerase II Transcription, Subunit 13 Homolog 3
  • Thyroid Hormone Receptor-Associated Protein, 240 KDa Subunit 3
  • Mediator Of RNA Polymerase II Transcription Subunit 13 3
  • Thyroid Hormone Receptor Associated Protein 1 2
  • KIAA0593 4
  • HSPC221 3

External Ids for MED13 Gene

Previous HGNC Symbols for MED13 Gene

  • THRAP1

Previous GeneCards Identifiers for MED13 Gene

  • GC17M057374
  • GC17M060019
  • GC17M055388

Summaries for MED13 Gene

Entrez Gene Summary for MED13 Gene

  • This gene encodes a component of the mediator complex (also known as TRAP, SMCC, DRIP, or ARC), a transcriptional coactivator complex thought to be required for the expression of almost all genes. The mediator complex is recruited by transcriptional activators or nuclear receptors to induce gene expression, possibly by interacting with RNA polymerase II and promoting the formation of a transcriptional pre-initiation complex. The product of this gene is proposed to form a sub-complex with MED12, cyclin C, and CDK8 that can negatively regulate transactivation by mediator. [provided by RefSeq, Jul 2008]

GeneCards Summary for MED13 Gene

MED13 (Mediator Complex Subunit 13) is a Protein Coding gene. Diseases associated with MED13 include Med23. Among its related pathways are PEDF Induced Signaling and Thyroid hormone signaling pathway. Gene Ontology (GO) annotations related to this gene include receptor activity and transcription cofactor activity. An important paralog of this gene is MED13L.

UniProtKB/Swiss-Prot for MED13 Gene

  • Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Additional gene information for MED13 Gene

No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MED13 Gene

Genomics for MED13 Gene

GeneHancer (GH) Regulatory Elements for MED13 Gene

Promoters and enhancers for MED13 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I062062 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE 600.8 +0.8 816 4.3 HDGF PKNOX1 CLOCK SMAD1 MLX ZFP64 ARID4B NEUROD1 SIN3A FEZF1 MED13 RPS10P26 TLK2 BRIP1 NACA2 ENSG00000200842
GH17I061926 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 56.9 +137.8 137815 2.5 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ZNF548 SP3 SSRP1 INTS2 MED13 RPS10P26 TLK2 GC17M061875 ENSG00000202361
GH17I061393 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 22.7 +659.8 659828 24.1 HDGF PKNOX1 FOXA2 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 SLC30A9 TBX2 PPM1D MED13 TBX2-AS1 TBX4 APPBP2 C17orf82 LOC101927855
GH17I061489 Enhancer 1.1 Ensembl ENCODE 44 +575.1 575144 2.1 FOXA2 ZFP64 ARID4B DMAP1 ZNF48 SLC30A9 FOS RXRA SP5 ZC3H11A MED13 APPBP2 PPM1D INTS2 TBX4 NACA2 TLK2 ENSG00000267137
GH17I062477 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE dbSUPER 22.8 -413.9 -413857 3.7 SIN3A ZBTB7B ZNF48 GLIS2 ELK1 SP3 NFYC MXD4 REST GLIS1 TLK2 MED13 RPS10P26 MRC2 METTL2A INTS2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MED13 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the MED13 gene promoter:

Genomic Locations for MED13 Gene

Genomic Locations for MED13 Gene
chr17:61,942,605-62,065,311
(GRCh38/hg38)
Size:
122,707 bases
Orientation:
Minus strand
chr17:60,019,966-60,142,643
(GRCh37/hg19)

Genomic View for MED13 Gene

Genes around MED13 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MED13 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MED13 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MED13 Gene

Proteins for MED13 Gene

  • Protein details for MED13 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9UHV7-MED13_HUMAN
    Recommended name:
    Mediator of RNA polymerase II transcription subunit 13
    Protein Accession:
    Q9UHV7
    Secondary Accessions:
    • B2RU05
    • O60334

    Protein attributes for MED13 Gene

    Size:
    2174 amino acids
    Molecular mass:
    239297 Da
    Quaternary structure:
    • Component of the Mediator complex, which is composed of MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The MED12, MED13, CCNC and CDK8 subunits form a distinct module termed the CDK8 module. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP.
    SequenceCaution:
    • Sequence=AAD22032.1; Type=Frameshift; Positions=Several; Evidence={ECO:0000305};

neXtProt entry for MED13 Gene

Post-translational modifications for MED13 Gene

No Post-translational modifications

Other Protein References for MED13 Gene

No data available for DME Specific Peptides for MED13 Gene

Domains & Families for MED13 Gene

Gene Families for MED13 Gene

HGNC:
Human Protein Atlas (HPA):
  • Cancer-related genes
  • Predicted intracellular proteins

Protein Domains for MED13 Gene

Suggested Antigen Peptide Sequences for MED13 Gene

Graphical View of Domain Structure for InterPro Entry

Q9UHV7

UniProtKB/Swiss-Prot:

MED13_HUMAN :
  • Belongs to the Mediator complex subunit 13 family.
Family:
  • Belongs to the Mediator complex subunit 13 family.
genes like me logo Genes that share domains with MED13: view

Function for MED13 Gene

Molecular function for MED13 Gene

UniProtKB/Swiss-Prot Function:
Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Phenotypes From GWAS Catalog for MED13 Gene

Gene Ontology (GO) - Molecular Function for MED13 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001104 RNA polymerase II transcription cofactor activity IDA 10198638
GO:0003712 transcription cofactor activity IDA 12218053
GO:0003713 transcription coactivator activity IDA 12037571
GO:0004872 receptor activity IDA 12218053
GO:0030374 ligand-dependent nuclear receptor transcription coactivator activity NAS 10235266
genes like me logo Genes that share ontologies with MED13: view
genes like me logo Genes that share phenotypes with MED13: view

miRNA for MED13 Gene

miRTarBase miRNAs that target MED13

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for MED13 Gene

Localization for MED13 Gene

Subcellular locations from UniProtKB/Swiss-Prot for MED13 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for MED13 gene
Compartment Confidence
nucleus 5
cytosol 2
plasma membrane 1
mitochondrion 1
peroxisome 1
endoplasmic reticulum 1

Subcellular locations from the

Human Protein Atlas (HPA)

Gene Ontology (GO) - Cellular Components for MED13 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA,IEA 10235267
GO:0005654 nucleoplasm TAS --
GO:0016020 membrane HDA,IDA 19946888
GO:0016592 mediator complex IDA 10198638
genes like me logo Genes that share ontologies with MED13: view

Pathways & Interactions for MED13 Gene

genes like me logo Genes that share pathways with MED13: view

Pathways by source for MED13 Gene

Gene Ontology (GO) - Biological Process for MED13 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
GO:0006357 regulation of transcription by RNA polymerase II IEA --
GO:0006367 transcription initiation from RNA polymerase II promoter TAS --
GO:0030518 intracellular steroid hormone receptor signaling pathway IDA 11867769
genes like me logo Genes that share ontologies with MED13: view

No data available for SIGNOR curated interactions for MED13 Gene

Drugs & Compounds for MED13 Gene

No Compound Related Data Available

Transcripts for MED13 Gene

Unigene Clusters for MED13 Gene

Mediator complex subunit 13:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MED13 Gene

No ASD Table

Relevant External Links for MED13 Gene

GeneLoc Exon Structure for
MED13
ECgene alternative splicing isoforms for
MED13

Expression for MED13 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MED13 Gene

Protein differential expression in normal tissues from HIPED for MED13 Gene

This gene is overexpressed in Placenta (27.4), Blymphocyte (25.2), and CD8 Tcells (13.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for MED13 Gene



Protein tissue co-expression partners for MED13 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of MED13 Gene:

MED13

SOURCE GeneReport for Unigene cluster for MED13 Gene:

Hs.282678

mRNA Expression by UniProt/SwissProt for MED13 Gene:

Q9UHV7-MED13_HUMAN
Tissue specificity: Ubiquitous.

Evidence on tissue expression from TISSUES for MED13 Gene

  • Nervous system(4.5)
  • Liver(4.2)
  • Heart(2.1)
genes like me logo Genes that share expression patterns with MED13: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and Phenotype-based relationships between genes and organs from Gene ORGANizer for MED13 Gene

Orthologs for MED13 Gene

This gene was present in the common ancestor of animals.

Orthologs for MED13 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia MED13 33 34
  • 99.75 (n)
dog
(Canis familiaris)
Mammalia MED13 33 34
  • 95.44 (n)
cow
(Bos Taurus)
Mammalia MED13 33 34
  • 94.99 (n)
mouse
(Mus musculus)
Mammalia Med13 33 16 34
  • 91.85 (n)
rat
(Rattus norvegicus)
Mammalia Med13 33
  • 91.54 (n)
oppossum
(Monodelphis domestica)
Mammalia MED13 34
  • 91 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia MED13 34
  • 89 (a)
OneToOne
chicken
(Gallus gallus)
Aves MED13 33 34
  • 81.75 (n)
lizard
(Anolis carolinensis)
Reptilia -- 34
  • 86 (a)
OneToMany
-- 34
  • 64 (a)
OneToMany
tropical clawed frog
(Silurana tropicalis)
Amphibia med13 33
  • 75.12 (n)
Str.10799 33
African clawed frog
(Xenopus laevis)
Amphibia Xl.10542 33
zebrafish
(Danio rerio)
Actinopterygii med13a 33 34
  • 66.71 (n)
med13b 34
  • 66 (a)
OneToMany
Dr.13644 33
fruit fly
(Drosophila melanogaster)
Insecta skd 33 34
  • 48.4 (n)
worm
(Caenorhabditis elegans)
Secernentea let-19 34
  • 16 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 34
  • 38 (a)
OneToMany
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.2069 33
Species where no ortholog for MED13 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for MED13 Gene

ENSEMBL:
Gene Tree for MED13 (if available)
TreeFam:
Gene Tree for MED13 (if available)

Paralogs for MED13 Gene

Paralogs for MED13 Gene

(1) SIMAP similar genes for MED13 Gene using alignment to 2 proteins:

Pseudogenes.org Pseudogenes for MED13 Gene

genes like me logo Genes that share paralogs with MED13: view

Variants for MED13 Gene

Sequence variations from dbSNP and Humsavar for MED13 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs773685207 uncertain-significance, not specified 61,966,645(-) G/A/C/T coding_sequence_variant, missense_variant, stop_gained, synonymous_variant
rs864309592 uncertain-significance, not specified 61,962,868(-) C/T coding_sequence_variant, missense_variant
rs140673828 benign, not specified 61,965,208(-) T/C coding_sequence_variant, missense_variant
rs1000033417 -- 62,066,319(-) T/C/G upstream_transcript_variant
rs1000035834 -- 62,017,237(-) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for MED13 Gene

Variant ID Type Subtype PubMed ID
esv3640960 CNV loss 21293372
nsv1109098 CNV deletion 24896259
nsv112179 CNV deletion 16902084
nsv1138564 CNV deletion 24896259

Variation tolerance for MED13 Gene

Residual Variation Intolerance Score: 0.849% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 3.95; 59.77% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for MED13 Gene

Human Gene Mutation Database (HGMD)
MED13
SNPedia medical, phenotypic, and genealogical associations of SNPs for
MED13

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for MED13 Gene

Disorders for MED13 Gene

MalaCards: The human disease database

(1) MalaCards diseases for MED13 Gene - From: HGMD and GeneCards

Disorder Aliases PubMed IDs
med23
  • autosomal recessive nonsyndromic mental retardation-18
- elite association - COSMIC cancer census association via MalaCards
Search MED13 in MalaCards View complete list of genes associated with diseases

Additional Disease Information for MED13

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology
genes like me logo Genes that share disorders with MED13: view

No data available for UniProtKB/Swiss-Prot and Genatlas for MED13 Gene

Publications for MED13 Gene

  1. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose JE … Uhl GR (Molecular medicine (Cambridge, Mass.) 2010) 3 44 58
  2. The variant rs1867277 in FOXE1 gene confers thyroid cancer susceptibility through the recruitment of USF1/USF2 transcription factors. (PMID: 19730683) Landa I … Robledo M (PLoS genetics 2009) 3 44 58
  3. MED1/TRAP220 exists predominantly in a TRAP/ Mediator subpopulation enriched in RNA polymerase II and is required for ER-mediated transcription. (PMID: 15989967) Zhang X … Roeder RG (Molecular cell 2005) 3 4 58
  4. A set of consensus mammalian mediator subunits identified by multidimensional protein identification technology. (PMID: 15175163) Sato S … Conaway RC (Molecular cell 2004) 3 4 58
  5. Identity between TRAP and SMCC complexes indicates novel pathways for the function of nuclear receptors and diverse mammalian activators. (PMID: 10198638) Ito M … Roeder RG (Molecular cell 1999) 3 4 58

Products for MED13 Gene

Sources for MED13 Gene

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