Aliases for MED13 Gene
Aliases for MED13 Gene
- Mediator Complex Subunit 13 2 3 4 5
- Thyroid Hormone Receptor-Associated Protein Complex 240 KDa Component 3 4
- Vitamin D3 Receptor-Interacting Protein Complex Component DRIP250 3 4
- Activator-Recruited Cofactor 250 KDa Component 3 4
- Thyroid Hormone Receptor-Associated Protein 1 3 4
- DRIP250 3 4
- TRAP240 3 4
- THRAP1 3 4
- ARC250 3 4
- Thyroid Hormone Receptor-Associated Protein Complex Component TRAP240 3
- Mediator Of RNA Polymerase II Transcription, Subunit 13 Homolog 3
- Thyroid Hormone Receptor-Associated Protein, 240 KDa Subunit 3
- Mediator Of RNA Polymerase II Transcription Subunit 13 3
- Thyroid Hormone Receptor Associated Protein 1 2
- KIAA0593 4
- HSPC221 3
External Ids for MED13 Gene
- HGNC: 22474
- Entrez Gene: 9969
- Ensembl: ENSG00000108510
- OMIM: 603808
- UniProtKB: Q9UHV7
Previous HGNC Symbols for MED13 Gene
- THRAP1
Previous GeneCards Identifiers for MED13 Gene
- GC17M057374
- GC17M060019
- GC17M055388
Summaries for MED13 Gene
-
This gene encodes a component of the mediator complex (also known as TRAP, SMCC, DRIP, or ARC), a transcriptional coactivator complex thought to be required for the expression of almost all genes. The mediator complex is recruited by transcriptional activators or nuclear receptors to induce gene expression, possibly by interacting with RNA polymerase II and promoting the formation of a transcriptional pre-initiation complex. The product of this gene is proposed to form a sub-complex with MED12, cyclin C, and CDK8 that can negatively regulate transactivation by mediator. [provided by RefSeq, Jul 2008]
GeneCards Summary for MED13 Gene
MED13 (Mediator Complex Subunit 13) is a Protein Coding gene. Diseases associated with MED13 include Med23. Among its related pathways are PEDF Induced Signaling and Thyroid hormone signaling pathway. Gene Ontology (GO) annotations related to this gene include receptor activity and transcription cofactor activity. An important paralog of this gene is MED13L.
UniProtKB/Swiss-Prot for MED13 Gene
-
Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MED13 Gene
Genomics for MED13 Gene
GeneHancer (GH) Regulatory Elements for MED13 Gene
Regulatory Element Products
Genomic Locations for MED13 Gene
- chr17:61,942,605-62,065,311
- (GRCh38/hg38)
- Size:
- 122,707 bases
- Orientation:
- Minus strand
- chr17:60,019,966-60,142,643
- (GRCh37/hg19)
Genomic View for MED13 Gene
- Cytogenetic band:
-
- 17q23.2 by Ensembl
- 17q23.2 by Entrez Gene
- 17q23.2 by HGNC


RefSeq DNA sequence for MED13 Gene
Proteins for MED13 Gene
-
Protein details for MED13 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q9UHV7-MED13_HUMAN
- Recommended name:
- Mediator of RNA polymerase II transcription subunit 13
- Protein Accession:
- Q9UHV7
- B2RU05
- O60334
Protein attributes for MED13 Gene
- Size:
- 2174 amino acids
- Molecular mass:
- 239297 Da
- Quaternary structure:
-
- Component of the Mediator complex, which is composed of MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The MED12, MED13, CCNC and CDK8 subunits form a distinct module termed the CDK8 module. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP.
- SequenceCaution:
-
- Sequence=AAD22032.1; Type=Frameshift; Positions=Several; Evidence={ECO:0000305};
Protein Expression for MED13 Gene
Post-translational modifications for MED13 Gene
Other Protein References for MED13 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
- Novus Biologicals Antibodies for MED13
-
Abcam antibodies for MED13
- Invitrogen Antibodies for MED13
- GeneTex MED13 antibody for MED13
-
Santa Cruz Biotechnology (SCBT) Antibodies for MED13
Protein Products
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-
Abcam proteins for MED13
Assay Products
No data available for DME Specific Peptides for MED13 Gene
Domains & Families for MED13 Gene
Gene Families for MED13 Gene
- HGNC:
- Human Protein Atlas (HPA):
-
- Cancer-related genes
- Predicted intracellular proteins
Protein Domains for MED13 Gene
- InterPro:
- ProtoNet:
Suggested Antigen Peptide Sequences for MED13 Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
Q9UHV7- Family:
-
- Belongs to the Mediator complex subunit 13 family.
Function for MED13 Gene
Molecular function for MED13 Gene
- UniProtKB/Swiss-Prot Function:
- Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
Phenotypes From GWAS Catalog for MED13 Gene
GO ID | Qualified GO term | Evidence | PubMed IDs |
---|---|---|---|
GO:0001104 | RNA polymerase II transcription cofactor activity | IDA | 10198638 |
GO:0003712 | transcription cofactor activity | IDA | 12218053 |
GO:0003713 | transcription coactivator activity | IDA | 12037571 |
GO:0004872 | receptor activity | IDA | 12218053 |
GO:0030374 | ligand-dependent nuclear receptor transcription coactivator activity | NAS | 10235266 |
Phenotypes for MED13 Gene
- MGI mutant phenotypes for MED13:
- inferred from 1 alleles
- GenomeRNAi human phenotypes for MED13:
Animal Model Products
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-
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CRISPR Products
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-
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miRNA for MED13 Gene
- miRTarBase miRNAs that target MED13
-
- hsa-mir-208a-3p (MIRT003912)
- hsa-mir-151a-3p (MIRT019505)
- hsa-mir-103a-3p (MIRT027154)
- hsa-mir-16-5p (MIRT031923)
- hsa-mir-1303 (MIRT035880)
- hsa-mir-30c-5p (MIRT047970)
- hsa-mir-196a-5p (MIRT048177)
- hsa-mir-17-5p (MIRT050942)
- hsa-let-7b-5p (MIRT052192)
- hsa-mir-141-3p (MIRT078340)
- hsa-mir-200a-3p (MIRT078341)
- hsa-mir-495-3p (MIRT078342)
- hsa-mir-5688 (MIRT078346)
- hsa-mir-27a-3p (MIRT197755)
- hsa-mir-27b-3p (MIRT197757)
- hsa-mir-5580-3p (MIRT197788)
- hsa-mir-8084 (MIRT234566)
- hsa-mir-6831-3p (MIRT406383)
- hsa-mir-205-5p (MIRT440259)
- hsa-mir-5585-5p (MIRT501894)
- hsa-mir-548ax (MIRT501895)
- hsa-mir-548ao-5p (MIRT501896)
- hsa-mir-6811-5p (MIRT501897)
- hsa-mir-6511b-5p (MIRT501898)
- hsa-mir-5585-3p (MIRT501899)
- hsa-mir-4708-5p (MIRT501900)
- hsa-mir-1253 (MIRT501901)
- hsa-mir-153-5p (MIRT501902)
- hsa-mir-95-5p (MIRT501903)
- hsa-mir-5197-3p (MIRT501904)
- hsa-mir-338-5p (MIRT501905)
- hsa-mir-5692a (MIRT501906)
- hsa-mir-3591-5p (MIRT535997)
- hsa-mir-4460 (MIRT535998)
- hsa-mir-4727-3p (MIRT535999)
- hsa-mir-4775 (MIRT536000)
- hsa-mir-7160-5p (MIRT536001)
- hsa-mir-3605-5p (MIRT536002)
- hsa-mir-3679-5p (MIRT536003)
- hsa-mir-1185-5p (MIRT536004)
- hsa-mir-27b-5p (MIRT536005)
- hsa-mir-6718-5p (MIRT536006)
- hsa-mir-203b-5p (MIRT536007)
- hsa-mir-590-3p (MIRT536008)
- hsa-mir-562 (MIRT536009)
- hsa-mir-140-5p (MIRT536010)
- hsa-mir-568 (MIRT547439)
- hsa-mir-4477a (MIRT547440)
- hsa-mir-3163 (MIRT547441)
- hsa-mir-595 (MIRT547442)
- hsa-mir-224-5p (MIRT547443)
- hsa-mir-4783-5p (MIRT609936)
- hsa-mir-362-3p (MIRT609937)
- hsa-mir-329-3p (MIRT609938)
- hsa-mir-8485 (MIRT609939)
miRNA Products
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Inhibitory RNA Products
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Cell Line Products
-
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No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for MED13 Gene
Localization for MED13 Gene
Subcellular locations from UniProtKB/Swiss-Prot for MED13 Gene
- Nucleus.
- Nucleus (3)
GO ID | Qualified GO term | Evidence | PubMed IDs |
---|---|---|---|
GO:0005634 | nucleus | IDA,IEA | 10235267 |
GO:0005654 | nucleoplasm | TAS | -- |
GO:0016020 | membrane | HDA,IDA | 19946888 |
GO:0016592 | mediator complex | IDA | 10198638 |
Pathways & Interactions for MED13 Gene
SuperPathway | Contained pathways | ||
---|---|---|---|
1 | Regulation of lipid metabolism by Peroxisome proliferator-activated receptor alpha (PPARalpha) | ||
2 | Gene Expression |
.48
|
|
3 | Metabolism |
.37
|
|
4 | Thyroid hormone signaling pathway | ||
5 | PEDF Induced Signaling |
Pathways by source for MED13 Gene
9 Reactome pathways for MED13 Gene
1 KEGG pathway for MED13 Gene
1 GeneGo (Thomson Reuters) pathway for MED13 Gene
1 Qiagen pathway for MED13 Gene
Interacting Proteins for MED13 Gene
GO ID | Qualified GO term | Evidence | PubMed IDs |
---|---|---|---|
GO:0006351 | transcription, DNA-templated | IEA | -- |
GO:0006355 | regulation of transcription, DNA-templated | IEA | -- |
GO:0006357 | regulation of transcription by RNA polymerase II | IEA | -- |
GO:0006367 | transcription initiation from RNA polymerase II promoter | TAS | -- |
GO:0030518 | intracellular steroid hormone receptor signaling pathway | IDA | 11867769 |
No data available for SIGNOR curated interactions for MED13 Gene
Transcripts for MED13 Gene
mRNA/cDNA for MED13 Gene
- (4) REFSEQ mRNAs :
- (7) Additional mRNA sequences :
- (281) Selected AceView cDNA sequences:
- (6) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for MED13 Gene
CRISPR Products
-
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- Overview of 74 available MED13 gene related products
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-
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-
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miRNA Products
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Inhibitory RNA Products
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-
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Expression for MED13 Gene
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for MED13 Gene
NURSA nuclear receptor signaling pathways regulating expression of MED13 Gene:
MED13SOURCE GeneReport for Unigene cluster for MED13 Gene:
Hs.282678mRNA Expression by UniProt/SwissProt for MED13 Gene:
Q9UHV7-MED13_HUMANEvidence on tissue expression from TISSUES for MED13 Gene
- Nervous system(4.5)
- Liver(4.2)
- Heart(2.1)
Primer Products
-
OriGene qPCR primer pairs for MED13
- genomics-online: primer clones - Search results for 74 available MED13 gene related products
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No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and Phenotype-based relationships between genes and organs from Gene ORGANizer for MED13 Gene
Orthologs for MED13 Gene
This gene was present in the common ancestor of animals.
Organism | Taxonomy | Gene | Similarity | Type | Details |
---|---|---|---|---|---|
chimpanzee (Pan troglodytes) |
Mammalia | MED13 33 34 |
|
||
dog (Canis familiaris) |
Mammalia | MED13 33 34 |
|
||
cow (Bos Taurus) |
Mammalia | MED13 33 34 |
|
||
mouse (Mus musculus) |
Mammalia | Med13 33 16 34 |
|
||
rat (Rattus norvegicus) |
Mammalia | Med13 33 |
|
||
oppossum (Monodelphis domestica) |
Mammalia | MED13 34 |
|
OneToOne | |
platypus (Ornithorhynchus anatinus) |
Mammalia | MED13 34 |
|
OneToOne | |
chicken (Gallus gallus) |
Aves | MED13 33 34 |
|
||
lizard (Anolis carolinensis) |
Reptilia | -- 34 |
|
OneToMany | |
-- 34 |
|
OneToMany | |||
tropical clawed frog (Silurana tropicalis) |
Amphibia | med13 33 |
|
||
Str.10799 33 |
|
||||
African clawed frog (Xenopus laevis) |
Amphibia | Xl.10542 33 |
|
||
zebrafish (Danio rerio) |
Actinopterygii | med13a 33 34 |
|
||
med13b 34 |
|
OneToMany | |||
Dr.13644 33 |
|
||||
fruit fly (Drosophila melanogaster) |
Insecta | skd 33 34 |
|
||
worm (Caenorhabditis elegans) |
Secernentea | let-19 34 |
|
OneToMany | |
sea squirt (Ciona savignyi) |
Ascidiacea | -- 34 |
|
OneToMany | |
sea squirt (Ciona intestinalis) |
Ascidiacea | Cin.2069 33 |
|
- Species where no ortholog for MED13 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- wheat (Triticum aestivum)
Paralogs for MED13 Gene
(1) SIMAP similar genes for MED13 Gene using alignment to 2 proteins:
Pseudogenes.org Pseudogenes for MED13 Gene
Variants for MED13 Gene
SNP ID | Clin | Chr 17 pos | Variation | AA Info | Type |
---|---|---|---|---|---|
rs773685207 | uncertain-significance, not specified | 61,966,645(-) | G/A/C/T | coding_sequence_variant, missense_variant, stop_gained, synonymous_variant | |
rs864309592 | uncertain-significance, not specified | 61,962,868(-) | C/T | coding_sequence_variant, missense_variant | |
rs140673828 | benign, not specified | 61,965,208(-) | T/C | coding_sequence_variant, missense_variant | |
rs1000033417 | -- | 62,066,319(-) | T/C/G | upstream_transcript_variant | |
rs1000035834 | -- | 62,017,237(-) | A/G | intron_variant |
Variant ID | Type | Subtype | PubMed ID |
---|---|---|---|
esv3640960 | CNV | loss | 21293372 |
nsv1109098 | CNV | deletion | 24896259 |
nsv112179 | CNV | deletion | 16902084 |
nsv1138564 | CNV | deletion | 24896259 |
Additional Variant Information for MED13 Gene
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for MED13 Gene
Disorders for MED13 Gene
Disorder | Aliases | PubMed IDs |
---|---|---|
med23 |
|
|
Additional Disease Information for MED13
- Genetic Association Database
- (GAD)
- Human Genome Epidemiology Navigator
- (HuGE)
- ATLAS of Genetics and Cytogenetics in Oncology and Haematology
No data available for UniProtKB/Swiss-Prot and Genatlas for MED13 Gene
Publications for MED13 Gene
- Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose JE … Uhl GR (Molecular medicine (Cambridge, Mass.) 2010) 3 44 58
- The variant rs1867277 in FOXE1 gene confers thyroid cancer susceptibility through the recruitment of USF1/USF2 transcription factors. (PMID: 19730683) Landa I … Robledo M (PLoS genetics 2009) 3 44 58
- MED1/TRAP220 exists predominantly in a TRAP/ Mediator subpopulation enriched in RNA polymerase II and is required for ER-mediated transcription. (PMID: 15989967) Zhang X … Roeder RG (Molecular cell 2005) 3 4 58
- A set of consensus mammalian mediator subunits identified by multidimensional protein identification technology. (PMID: 15175163) Sato S … Conaway RC (Molecular cell 2004) 3 4 58
- Identity between TRAP and SMCC complexes indicates novel pathways for the function of nuclear receptors and diverse mammalian activators. (PMID: 10198638) Ito M … Roeder RG (Molecular cell 1999) 3 4 58
Products for MED13 Gene
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Sources for MED13 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) GeneAnnot
- (31) CGAP SAGE
- (32) SOURCE
- (33) HomoloGene
- (34) PanEnsembl
- (35) euGenes
- (36) SGD
- (37) FlyBase
- (38) WormBase
- (39) Pseudogene
- (40) DGV
- (41) dbSNP
- (42) GenAtlas
- (43) HGMD
- (44) GAD
- (45) BGMUT
- (46) HuGE
- (47) Atlas
- (48) Cell Signaling Technology
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
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